Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 0.6% on pypi.org
Top 0.6% downloads on pypi.org
Top 0.2% dependent packages on pypi.org
Top 0.7% dependent repos on pypi.org
Top 1.3% forks on pypi.org
Top 0.7% docker downloads on pypi.org

pypi.org : pyro-ppl

A Python library for probabilistic modeling and inference

Registry - Source - Homepage - Documentation - JSON
purl: pkg:pypi/pyro-ppl
Keywords: machine, learning, statistics, probabilistic, programming, bayesian, modeling, pytorch, bayesian-inference, deep-learning, machine-learning, probabilistic-modeling, probabilistic-programming, python, variational-inference
License: Apache-2.0
Latest release: 4 months ago
First release: over 6 years ago
Dependent packages: 78
Dependent repositories: 437
Downloads: 280,956 last month
Stars: 8,394 on GitHub
Forks: 983 on GitHub
Docker dependents: 36
Docker downloads: 24,433,987
Total Commits: 2330
Committers: 160
Average commits per author: 14.563
Development Distribution Score (DDS): 0.789
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Funding links: https://github.com/sponsors/fritzo
Last synced: 5 days ago

zoobot 2.0.1
Galaxy morphology classifiers
10 versions - Latest release: 23 days ago - 1 dependent repositories - 188 downloads last month - 63 stars on GitHub - 1 maintainer
crispr-bean 1.2.2
Base Editor screen analysis [Bayesian Estimation of variant effect] with guide Activity Normaliza...
11 versions - Latest release: about 1 month ago - 1 dependent repositories - 267 downloads last month - 7 stars on GitHub - 1 maintainer
Top 1.3% on pypi.org
ax-platform 0.4.0
Adaptive Experimentation
40 versions - Latest release: about 1 month ago - 18 dependent packages - 251 dependent repositories - 95 thousand downloads last month - 2,259 stars on GitHub - 3 maintainers
Top 1.2% on pypi.org
botorch 0.11.0
Bayesian Optimization in PyTorch
43 versions - Latest release: about 1 month ago - 39 dependent packages - 373 dependent repositories - 153 thousand downloads last month - 2,874 stars on GitHub - 5 maintainers
sctm 0.1.3
A toolbox for single cell topic models
3 versions - Latest release: about 1 month ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
astrophot 0.16.4
A fast, flexible, automated, and differentiable astronomical image 2D forward modelling tool for ...
23 versions - Latest release: about 1 month ago - 139 downloads last month - 75 stars on GitHub - 1 maintainer
spotiphy 0.1.3
An integrated pipeline designed to deconvolute and decompose spatial transcriptomics data, and pr...
4 versions - Latest release: about 1 month ago - 36 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.5% on pypi.org
causalml 0.15.1
Python Package for Uplift Modeling and Causal Inference with Machine Learning Algorithms
24 versions - Latest release: about 2 months ago - 35 dependent repositories - 45.3 thousand downloads last month - 4,768 stars on GitHub - 4 maintainers
scdecipher 0.1.2
Decipher is a single-cell analysis package to integrate and compare perturbed samples to healthy ...
2 versions - Latest release: about 2 months ago - 111 downloads last month - 0 stars on GitHub - 1 maintainer
mngs 1.3.2
For lazy python users (monogusa people in Japanse), especially in ML/DSP fields
49 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 223 downloads last month - 0 stars on GitHub - 1 maintainer
py-irt 0.6.2
Bayesian IRT models in Python
28 versions - Latest release: about 2 months ago - 2 dependent repositories - 492 downloads last month - 110 stars on GitHub - 1 maintainer
autoprof 1.1.2
Fast, robust, deep isophotal solutions for galaxy images
30 versions - Latest release: about 2 months ago - 71 downloads last month - 26 stars on GitHub - 1 maintainer
pfolio 0.0.1.dev4
Portfolio Management Library, including analysis, analytics and optimization
4 versions - Latest release: about 2 months ago - 92 downloads last month - 0 stars on GitHub - 1 maintainer
torch-mist 0.2.17
Mutual Information Estimation toolkit based on pytorch
28 versions - Latest release: 2 months ago - 246 downloads last month - 7 stars on GitHub - 1 maintainer
flighted 0.1.2
FLIGHTED, a machine learning method for inference of fitness landscapes from high-throughput expe...
3 versions - Latest release: 2 months ago - 18 downloads last month - 2 stars on GitHub - 1 maintainer
cytoone 0.0.1
A unified probabilistic framework for CyTOF data
1 version - Latest release: 3 months ago - 9 downloads last month - 1 maintainer
turftopic 0.2.13
Topic modeling with contextual representations from sentence transformers.
17 versions - Latest release: 3 months ago - 1 dependent package - 125 downloads last month - 6 stars on GitHub - 1 maintainer
scelda 0.0.2
3 versions - Latest release: 3 months ago - 18 downloads last month - 1 maintainer
vlpi 0.2.4
Python implementation of the variational latent phenotype model described in Blair et al..
14 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 115 downloads last month - 1 stars on GitHub - 1 maintainer
topic-benchmark 0.2.2
Benchmarking topic models for a paper
11 versions - Latest release: 3 months ago - 282 downloads last month - 1 maintainer
pybasilica 0.3.0
Bayesian NMF signatures deconvolution and DP clustering.
20 versions - Latest release: 3 months ago - 91 downloads last month - 0 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
scvi-tools 1.1.2
Deep probabilistic analysis of single-cell omics data.
77 versions - Latest release: 3 months ago - 43 dependent packages - 41 dependent repositories - 20.5 thousand downloads last month - 1,113 stars on GitHub - 3 maintainers
leafcutter 2.0.2
Leafcutter python implementation
3 versions - Latest release: 4 months ago - 47 downloads last month - 195 stars on GitHub - 1 maintainer
cuqipy-pytorch 0.4.0
CUQIpy plugin for PyTorch
9 versions - Latest release: 4 months ago - 81 downloads last month - 3 stars on GitHub - 1 maintainer
mira-multiome 2.1.1
Single-cell multiomics data analysis
33 versions - Latest release: 4 months ago - 3 dependent repositories - 504 downloads last month - 50 stars on GitHub - 1 maintainer
scunagi 0.2.3
A Python package for UNAGI
5 versions - Latest release: 5 months ago - 33 downloads last month - 6 stars on GitHub - 1 maintainer
xgboostlss 0.4.2
XGBoostLSS - An extension of XGBoost to probabilistic modelling.
2 versions - Latest release: 5 months ago - 104 downloads last month - 502 stars on GitHub - 1 maintainer
lightgbmlss 0.4.1
LightGBMLSS - An extension of LightGBM to probabilistic modelling.
2 versions - Latest release: 5 months ago - 385 downloads last month - 228 stars on GitHub - 1 maintainer
scdna-replication-tools 0.0.1
Code for analyzing single-cell replication dynamics
1 version - Latest release: 6 months ago - 15 downloads last month - 1 stars on GitHub - 1 maintainer
scstatedynamics 0.0.20
A package to decipher the drug-responsive tumor cell state dynamics by modeling single-cell level...
19 versions - Latest release: 6 months ago - 159 downloads last month - 2 stars on GitHub - 1 maintainer
velocycle 0.1.0.5
Bayesian model for RNA velocity estimation of periodic manifolds
3 versions - Latest release: 6 months ago - 37 downloads last month - 12 stars on GitHub - 1 maintainer
gpplus 0.1.0
Python Library for Generalized Gaussian Process Modeling
7 versions - Latest release: 6 months ago - 268 downloads last month - 5 stars on GitHub - 1 maintainer
cellarium-ml 0.0.3
Machine learning library for single-cell data analysis
4 versions - Latest release: 6 months ago - 145 downloads last month - 8 stars on GitHub - 1 maintainer
dictys 1.1.0
Context specific and dynamic gene regulatory network reconstruction and analysis
2 versions - Latest release: 6 months ago - 25 downloads last month - 98 stars on GitHub - 1 maintainer
chirho 0.2.0
Causal reasoning
4 versions - Latest release: 6 months ago - 1 dependent repositories - 48 downloads last month - 157 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
sbi 0.22.0
Simulation-based inference.
30 versions - Latest release: 6 months ago - 4 dependent packages - 14 dependent repositories - 1.62 thousand downloads last month - 535 stars on GitHub - 4 maintainers
pydance 1.0.1
Deep Learning for Single-cell Analysis
4 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 107 downloads last month - 281 stars on GitHub - 2 maintainers
diisco 0.1.2
A probabilistic programming method to characterize dynamic cellular interactions in longitudinal ...
2 versions - Latest release: 6 months ago - 30 downloads last month - 1 maintainer
pyroved 0.3.0
Variational encoder-decoder models in Pyro probabilistic programming language
10 versions - Latest release: 6 months ago - 1 dependent repositories - 106 downloads last month - 43 stars on GitHub - 1 maintainer
stockpy-learn 0.3.2
Deep Learning Regression and Classification Library built on top of PyTorch and Pyro
15 versions - Latest release: 7 months ago - 54 downloads last month - 12 stars on GitHub - 1 maintainer
mpol 0.2.0
Regularized Maximum Likelihood Imaging for Radio Astronomy
6 versions - Latest release: 7 months ago - 1 dependent repositories - 124 downloads last month - 0 stars on GitHub - 1 maintainer
scpca 0.3.1
Single-cell PCA.
3 versions - Latest release: 7 months ago - 11 downloads last month - 1 stars on GitHub - 1 maintainer
opengsl 0.0.55
A comprehensive benchmark for Graph Structure Learning.
4 versions - Latest release: 7 months ago - 29 downloads last month - 153 stars on GitHub - 1 maintainer
umaia 0.2
Toolbox for the processing and analysis of MALDI-MSI data
2 versions - Latest release: 8 months ago - 24 downloads last month - 6 stars on GitHub - 1 maintainer
muvi 0.1.1
MuVI: A multi-view latent variable model with domain-informed structured sparsity for integrating...
3 versions - Latest release: 8 months ago - 208 downloads last month - 24 stars on GitHub - 1 maintainer
sgdrf 0.2.1
Python implementation of Streaming Gaussian Dirichlet Random Fields (San Soucie et al. 2023)
4 versions - Latest release: 8 months ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
autophot 1.0.0
Sorry this has moved to: AstroPhot. Please run: pip install astrophot
7 versions - Latest release: 8 months ago - 23 downloads last month - 71 stars on GitHub - 1 maintainer
spfa 0.6.0
Probabilistic factor analysis model with covariate guided factors
7 versions - Latest release: 8 months ago - 7 downloads last month - 1 stars on GitHub - 1 maintainer
congas 0.0.78
Copy Number genotyping from single cell RNA sequencing
63 versions - Latest release: 8 months ago - 441 downloads last month - 10 stars on GitHub - 1 maintainer
pyrovelocity 0.1.3
A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabili...
17 versions - Latest release: 9 months ago - 54 downloads last month - 35 stars on GitHub - 3 maintainers
pdebench 0.1.0
PDEBench: An Extensive Benchmark for Scientific Machine Learning
1 version - Latest release: 10 months ago - 58 downloads last month - 546 stars on GitHub - 1 maintainer
cellbender 0.3.0
A software package for eliminating technical artifacts from high-throughput single-cell RNA seque...
4 versions - Latest release: 10 months ago - 1.04 thousand downloads last month - 262 stars on GitHub - 1 maintainer
pgmuvi 0.1.0rc4
A python package to interpret multiwavelength astronomical timeseries with GPs
1 version - Latest release: 11 months ago - 6 downloads last month - 12 stars on GitHub - 1 maintainer
easypheno 0.0.5
state-of-the-art and easy-to-use plant phenotype prediction
5 versions - Latest release: 11 months ago - 31 downloads last month - 10 stars on GitHub - 1 maintainer
sbibm 1.1.0
Simulation-based inference benchmark
10 versions - Latest release: 11 months ago - 2 dependent repositories - 146 downloads last month - 81 stars on GitHub - 1 maintainer
tapqir 1.1.19
Bayesian analysis of co-localization single-molecule microscopy image data
26 versions - Latest release: 11 months ago - 1 dependent repositories - 187 downloads last month - 4 stars on GitHub - 1 maintainer
pybefit 0.1.23
Probabilistic inference for models of behaviour
7 versions - Latest release: 12 months ago - 26 downloads last month - 9 stars on GitHub - 1 maintainer
syncdsgen 0.0.17
A package to generate synthetic coding sequences data
17 versions - Latest release: 12 months ago - 106 downloads last month - 1 maintainer
sccca 0.3.1
Single cell canonical correlation analysis.
6 versions - Latest release: about 1 year ago - 26 downloads last month - 1 maintainer
strainfacts 0.4.0b0
Factorize metagenotypes to infer strains and their abundances
1 version - Latest release: about 1 year ago - 9 downloads last month - 10 stars on GitHub - 1 maintainer
ex2mcmc 0.0.4
Local-Global MCMC kernels: the bost of both worlds (NeurIPS 2022)
3 versions - Latest release: about 1 year ago - 26 downloads last month - 6 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
netcal 1.3.5
The net:cal calibration framework is a Python 3 library for measuring and mitigating miscalibrati...
13 versions - Latest release: about 1 year ago - 4 dependent packages - 11 dependent repositories - 34.1 thousand downloads last month - 313 stars on GitHub - 1 maintainer
bayne 0.2.2
Bayesian Neural Networks in Pytorch
9 versions - Latest release: about 1 year ago - 101 downloads last month - 2 stars on GitHub - 1 maintainer
pylineagt 0.1.61
A Pyro model to perform lineage inference from Gene Therapy assays
119 versions - Latest release: over 1 year ago - 1 dependent repositories - 574 downloads last month - 1 stars on GitHub - 1 maintainer
hmobster 0.0.44
VAF clustering for multiple karyotypes
40 versions - Latest release: over 1 year ago - 1 dependent repositories - 321 downloads last month - 1 stars on GitHub - 1 maintainer
tyxe 0.0.2
BNNs for PyTorch using Pyro
1 version - Latest release: over 1 year ago - 1 dependent repositories - 48 downloads last month - 1 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
cell2location 0.1.3
cell2location: High-throughput spatial mapping of cell types
4 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 2.14 thousand downloads last month - 280 stars on GitHub - 2 maintainers
Top 3.8% on pypi.org
funsor 0.4.5
A tensor-like library for functions and distributions
11 versions - Latest release: over 1 year ago - 6 dependent packages - 28 dependent repositories - 4.26 thousand downloads last month - 232 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
orbit-ml 1.1.4
Orbit is a package for Bayesian time series modeling and inference.
34 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 20.9 thousand downloads last month - 1,804 stars on GitHub - 3 maintainers
Top 1.0% on pypi.org
gpytorch 1.9.1
An implementation of Gaussian Processes in Pytorch
38 versions - Latest release: over 1 year ago - 68 dependent packages - 879 dependent repositories - 221 thousand downloads last month - 3,434 stars on GitHub - 2 maintainers
ipolng 0.0.2
An unsupervised model for the integrative analysis of single-cell multiomics data, coded in the d...
2 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
pyromaniac 0.5.0
Helper modules for pyro.
6 versions - Latest release: over 1 year ago - 1 dependent repositories - 29 downloads last month - 1 maintainer
spateo-release 1.0.2
Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics
3 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 155 downloads last month - 146 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
crisprbean 0.1.0 removed
CRISPR Base Editing with Acticity Normalization
1 version - Latest release: over 1 year ago - 1 maintainer
vegvisir 0.0.1
Vegvisir
1 version - Latest release: over 1 year ago - 17 downloads last month - 1 maintainer
boppf 0.1.0
Bayesian optimization of particle packing fractions.
1 version - Latest release: over 1 year ago - 17 downloads last month - 1 maintainer
deepirtools 0.2.1
Deep learning-based estimation and inference for item response theory models.
8 versions - Latest release: over 1 year ago - 62 downloads last month - 17 stars on GitHub - 1 maintainer
draupnir 0.0.193
Ancestral sequence reconstruction using a tree structured Ornstein Uhlenbeck variational autoencoder
23 versions - Latest release: over 2 years ago - 1 dependent repositories - 210 downloads last month - 10 stars on GitHub - 1 maintainer