Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 7.8% on repo1.maven.org
Top 0.6% dependent packages on repo1.maven.org
Top 1.1% dependent repos on repo1.maven.org
Top 4.1% docker downloads on repo1.maven.org

repo1.maven.org : com.github.samtools:htsjdk

A Java API for high-throughput sequencing data (HTS) formats

Registry - Source - Homepage - Documentation - JSON
purl: pkg:maven/com.github.samtools/htsjdk
Keywords: bam, cram, dna, fasta, genomics, java, java-api, ngs, sam, sequencing, vcf
License: MIT
Latest release: 5 months ago
First release: about 9 years ago
Namespace: com.github.samtools
Dependent packages: 133
Dependent repositories: 208
Stars: 254 on GitHub
Forks: 249 on GitHub
Docker dependents: 7
Docker downloads: 8,573
See more repository details: repos.ecosyste.ms
Last synced: 20 days ago

org.biokotlin:biokotlin 0.15
BioKotlin aims to be a high-performance bioinformatics library that brings the power and speed of...
16 versions - Latest release: 18 days ago - 1 dependent repositories
org.dishevelled:dsh-compress 1.6.10 💰
Compression utility classes.
31 versions - Latest release: 18 days ago - 15 dependent packages - 12 dependent repositories - 5 stars on GitHub
org.genomicsdb:genomicsdb 1.5.3
Java API for GenomicsDB
38 versions - Latest release: 21 days ago - 2 dependent packages - 1 dependent repositories - 77 stars on GitHub
io.projectglow:glow-spark3_2.12 2.0.0
An open-source toolkit for large-scale genomic analysis
8 versions - Latest release: about 2 months ago - 8 dependent packages - 1 dependent repositories - 225 stars on GitHub
org.opencb.opencga:opencga-analysis 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 3 dependent packages - 2 dependent repositories - 160 stars on GitHub
org.opencb.opencga:opencga-storage-core 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 10 dependent packages - 4 dependent repositories - 160 stars on GitHub
org.opencb.opencga:opencga-catalog 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 6 dependent packages - 2 dependent repositories - 160 stars on GitHub
org.opencb.opencga:opencga-storage-app 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 160 stars on GitHub
org.opencb.opencga:opencga-core 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 7 dependent packages - 1 dependent repositories - 160 stars on GitHub
org.opencb.opencga:opencga-storage-hadoop-core 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 3 dependent packages - 1 dependent repositories - 160 stars on GitHub
org.opencb.opencga:opencga 3.0.0
OpenCGA projects implements a big data platform for genomic data analysis
63 versions - Latest release: about 2 months ago - 160 stars on GitHub
org.opencb.cellbase:cellbase-lib 6.0.0
CellBase projects integrates several biological databases into a NoSQL database plus many WS to q...
60 versions - Latest release: about 2 months ago - 3 dependent packages - 1 dependent repositories - 75 stars on GitHub
org.opencb.cellbase:cellbase-app 6.0.0
CellBase projects integrates several biological databases into a NoSQL database plus many WS to q...
65 versions - Latest release: about 2 months ago - 75 stars on GitHub
org.opencb.cellbase:cellbase 6.0.0
CellBase projects integrates several biological databases into a NoSQL database plus many WS to q...
66 versions - Latest release: about 2 months ago - 75 stars on GitHub
org.opencb.biodata:biodata-formats 3.0.0
Biological entities and their equivalents in different file formats typically used in bioinformatics
86 versions - Latest release: about 2 months ago - 24 dependent packages - 7 dependent repositories - 26 stars on GitHub
org.opencb.biodata:biodata-tools 3.0.0
Biological entities and their equivalents in different file formats typically used in bioinformatics
86 versions - Latest release: about 2 months ago - 16 dependent packages - 8 dependent repositories - 26 stars on GitHub
org.opencb.biodata:biodata-models 3.0.0
Biological entities and their equivalents in different file formats typically used in bioinformatics
86 versions - Latest release: about 2 months ago - 29 dependent packages - 9 dependent repositories - 26 stars on GitHub
org.opencb.biodata:biodata 3.0.0
Biological entities and their equivalents in different file formats typically used in bioinformatics
86 versions - Latest release: about 2 months ago - 1 dependent repositories - 26 stars on GitHub
Top 9.3% on repo1.maven.org
org.bdgenomics.adam:adam-core-spark3_2.12 1.0.1
A fast, scalable genome analysis system
8 versions - Latest release: 4 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark3_2.12 1.0.1
A fast, scalable genome analysis system
8 versions - Latest release: 4 months ago - 948 stars on GitHub
com.fulcrumgenomics:fgbio_2.13 2.2.1 💰
fgbio
14 versions - Latest release: 4 months ago - 1 dependent package - 262 stars on GitHub
net.maizegenetics:tassel 5.2.93
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage ...
48 versions - Latest release: 4 months ago - 2 dependent packages - 4 dependent repositories
org.broadinstitute:gatk-test-utils 4.5.0.0
Development on GATK 4
29 versions - Latest release: 5 months ago - 1,396 stars on GitHub
org.broadinstitute:gatk 4.5.0.0
Development on GATK 4
48 versions - Latest release: 5 months ago - 2 dependent packages - 3 dependent repositories - 1,396 stars on GitHub
Top 6.7% on repo1.maven.org
com.github.broadinstitute:picard 3.1.1
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and ...
175 versions - Latest release: 6 months ago - 12 dependent packages - 23 dependent repositories - 857 stars on GitHub
com.intel.gkl:gkl 0.8.11
Genomics compute kernels optimized for Intel Architecture
34 versions - Latest release: 10 months ago - 10 dependent packages - 26 dependent repositories - 97 stars on GitHub
org.dishevelled:dsh-bio 2.2.2 💰
dishevelled.org bio multimodule build.
26 versions - Latest release: 10 months ago - 6 stars on GitHub
org.opencb.oskar:oskar 0.2.1
Oskar projects implements a big data genomic analysis
2 versions - Latest release: 11 months ago - 4 stars on GitHub
org.opencb.oskar:oskar-spark 0.2.1
Oskar projects implements a big data genomic analysis
2 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 4 stars on GitHub
com.fulcrumgenomics:fgbio_2.12 1.3.1 💰
fgbio
16 versions - Latest release: 12 months ago - 262 stars on GitHub
org.biodatageeks:sequila_2.12 1.1.1
sequila
21 versions - Latest release: about 1 year ago - 6 stars on GitHub
org.gorpipe:gor-spark 4.3.2
GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative ...
36 versions - Latest release: over 1 year ago
org.gorpipe:gor-drivers 4.3.2
GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative ...
9 versions - Latest release: over 1 year ago - 4 dependent packages
org.gorpipe:gor-model 4.3.2
GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative ...
34 versions - Latest release: over 1 year ago - 5 dependent packages
org.gorpipe:gor-gortools 4.3.2
GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative ...
34 versions - Latest release: over 1 year ago - 3 dependent packages
de.charite.compbio:jannovar-stats 0.41
jannovar-stats helps in aggregating statistics about variants and variant annotations
21 versions - Latest release: over 1 year ago - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-filter 0.41
jannovar-filter helps with applying threshold-based filters for WES/WGS filters
24 versions - Latest release: over 1 year ago - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-vardbs 0.41
jannovar-vardbs helps with using variant annotation databases, e.g. dbSNP
25 versions - Latest release: over 1 year ago - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-htsjdk 0.41
jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
28 versions - Latest release: over 1 year ago - 3 dependent packages - 10 dependent repositories - 50 stars on GitHub
au.csiro.aehrc.variant-spark:variant-spark_2.12 0.5.2
Genomic variants interpretation toolkit
3 versions - Latest release: over 1 year ago - 121 stars on GitHub
net.maizegenetics:phg 0.0.40
PHG - Practical Haplotype Graph
49 versions - Latest release: over 1 year ago - 1 dependent repositories
au.csiro.aehrc.variant-spark:variant-spark_2.11 0.4.0
Genomic variants interpretation toolkit
7 versions - Latest release: almost 2 years ago - 121 stars on GitHub
org.forome:astorage.core 1.0.0p13
A simple DAO library for rocksdb
1 version - Latest release: almost 2 years ago - 0 stars on GitHub
org.dishevelled:dsh-bio-convert-htsjdk 2.0.9 💰
Convert between dishevelled and htsjdk data models.
23 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 6 stars on GitHub
org.bdgenomics.convert:convert-htsjdk 0.14.0
Conversions between HTSJDK and Big Data Genomics Avro Formats
14 versions - Latest release: almost 2 years ago - 3 dependent packages - 1 dependent repositories - 0 stars on GitHub
org.bdgenomics.convert:convert 0.14.0
Conversions to and from Big Data Genomics Avro Formats
15 versions - Latest release: almost 2 years ago - 5 dependent packages - 4 dependent repositories - 0 stars on GitHub
org.bdgenomics.convert:convert-parent 0.14.0
Convert Parent POM
14 versions - Latest release: almost 2 years ago - 0 stars on GitHub
com.hubspot:SingularityService 1.5.0
Scheduler (HTTP API and webapp) for running Mesos tasks—long running processes, one-off tasks, an...
54 versions - Latest release: almost 2 years ago - 2 dependent packages - 7 dependent repositories - 811 stars on GitHub
com.hubspot:Singularity 1.5.0
Scheduler (HTTP API and webapp) for running Mesos tasks—long running processes, one-off tasks, an...
83 versions - Latest release: almost 2 years ago - 811 stars on GitHub
org.forome:astorage 1.0.0p13
A simple DAO library for rocksdb
1 version - Latest release: about 2 years ago - 0 stars on GitHub
org.forome.astorage:astorage 1.0.0p13
A simple DAO library for rocksdb
1 version - Latest release: about 2 years ago - 0 stars on GitHub
com.fulcrumgenomics:dagr-tasks_2.13 1.1.0
A set of example dagr tasks.
2 versions - Latest release: about 2 years ago - 1 dependent package - 69 stars on GitHub
io.cvbio.coord:interval_2.13 0.0.1
A better genomic interval that is compatible with HTSJDK
1 version - Latest release: over 2 years ago - 1 stars on GitHub
io.projectglow:glow-spark2_2.11 1.1.2
An open-source toolkit for large-scale genomic analysis
6 versions - Latest release: over 2 years ago - 1 dependent package - 225 stars on GitHub
io.projectglow:glow-spark2_2.12 1.1.2
An open-source toolkit for large-scale genomic analysis
6 versions - Latest release: over 2 years ago - 225 stars on GitHub
org.monarchinitiative.svart:svart 1.0.2
a library to ease representation of variants and performing genomic manipulations
8 versions - Latest release: over 2 years ago - 2 dependent packages - 8 dependent repositories - 7 stars on GitHub
net.maizegenetics:tassel6 6.0.1
TASSEL 6 is a software package to evaluate traits association. Feature Tables are at the heart of...
2 versions - Latest release: almost 3 years ago - 1 dependent repositories
org.biodatageeks:seqtender_2.12 0.4.0
seqtender
1 version - Latest release: almost 3 years ago - 0 stars on GitHub
org.disq-bio:disq 0.3.8
A library for manipulating bioinformatics sequencing formats in Apache Spark.
11 versions - Latest release: almost 3 years ago - 6 dependent packages - 2 dependent repositories - 30 stars on GitHub
io.github.pityka:lame_2.12 0.0.4
lame
2 versions - Latest release: about 3 years ago - 1 dependent package - 0 stars on GitHub
io.github.pityka:lame_2.13 0.0.4
lame
3 versions - Latest release: about 3 years ago - 1 dependent package - 0 stars on GitHub
org.gorpipe.gor:gor-model 3.7.0
GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative ...
1 version - Latest release: about 3 years ago - 2 dependent packages - 1 dependent repositories
org.gorpipe.gor:gor-gortools 3.7.0
GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative ...
1 version - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories
org.jetbrains.bio:big 0.9.1
BigWIG, BigBED and TDF for the JVM
1 version - Latest release: about 3 years ago - 1 dependent repositories - 12 stars on GitHub
org.biodatageeks:sequila_2.11 0.5.20
sequila
10 versions - Latest release: over 3 years ago - 6 stars on GitHub
org.biodatageeks:seqtender_2.11 0.3.7
seqtender
5 versions - Latest release: over 3 years ago - 0 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.12 0.33.0
A fast, scalable genome analysis system
7 versions - Latest release: over 3 years ago - 10 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.12 0.33.0
A fast, scalable genome analysis system
7 versions - Latest release: over 3 years ago - 948 stars on GitHub
Top 6.8% on repo1.maven.org
org.bdgenomics.adam:adam-core-spark2_2.11 0.33.0
A fast, scalable genome analysis system
14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.11 0.33.0
A fast, scalable genome analysis system
14 versions - Latest release: over 3 years ago - 948 stars on GitHub
xyz.ielis.hyperutil:hyperutil-reference 0.1.4
Hyperuseful Java utilities for bioinformatics projects
8 versions - Latest release: over 3 years ago - 0 stars on GitHub
com.google.allenday:genomics-dataflow-core 0.1.4
Components for implementation Google Cloud Dataflow piplines to solve genomics processing tasks
19 versions - Latest release: over 3 years ago - 3 dependent repositories - 3 stars on GitHub
io.projectglow:glow_2.11 0.5.0
An open-source toolkit for large-scale genomic analysis
8 versions - Latest release: almost 4 years ago - 1 dependent package - 225 stars on GitHub
io.projectglow:glow_2.12 0.5.0
An open-source toolkit for large-scale genomic analysis
4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 225 stars on GitHub
org.bdgenomics.mango:mango-core 0.0.5
Sonatype helps open source projects to set up Maven repositories on https://oss.sonatype.org/
5 versions - Latest release: over 4 years ago - 2 dependent packages - 1 dependent repositories - 120 stars on GitHub
org.bdgenomics.mango:mango-parent 0.0.5
Sonatype helps open source projects to set up Maven repositories on https://oss.sonatype.org/
5 versions - Latest release: over 4 years ago - 120 stars on GitHub
com.fulcrumgenomics:dagr-tasks_2.12 1.0.0
A set of example dagr tasks.
6 versions - Latest release: over 4 years ago - 2 dependent packages - 69 stars on GitHub
com.fulcrumgenomics:fgbio_2.11 0.8.1 💰
fgbio
14 versions - Latest release: about 5 years ago - 262 stars on GitHub
com.fulcrumgenomics:dagr-tasks_2.11 0.5.0
A set of example dagr tasks.
8 versions - Latest release: over 5 years ago - 2 dependent packages - 69 stars on GitHub
com.github.biopet:ngs-utils_2.12 0.7
ngs-utils
3 versions - Latest release: over 5 years ago - 0 stars on GitHub
com.databricks:SnpEff 4.3.1
Variant annotation and effect prediction package.
1 version - Latest release: almost 6 years ago - 1 dependent package - 1 dependent repositories - 1 stars on GitHub
org.hammerlab.genomics:readsets_2.11 1.2.1
readsets
9 versions - Latest release: almost 6 years ago - 0 stars on GitHub
org.hammerlab.genomics:reads_2.11 1.0.7
reads
8 versions - Latest release: almost 6 years ago - 1 dependent package - 1 stars on GitHub
org.hammerlab.adam:core_2.11 0.23.4
core
8 versions - Latest release: almost 6 years ago - 2 dependent packages - 1 stars on GitHub
org.hammerlab.genomics:loci_2.11 2.2.0
loci
16 versions - Latest release: almost 6 years ago - 5 dependent packages - 1 stars on GitHub
org.hammerlab.genomics:utils_2.11 1.3.2
utils
10 versions - Latest release: almost 6 years ago - 3 dependent packages - 0 stars on GitHub
org.seqdoop:hadoop-bam 7.10.0
A Java library for the manipulation of files in common bioinformatics formats using the Hadoop Ma...
16 versions - Latest release: about 6 years ago - 44 dependent packages - 35 dependent repositories - 69 stars on GitHub
com.github.biopet:ngs-utils_2.11 0.3.1
ngs-utils
8 versions - Latest release: about 6 years ago - 36 dependent packages - 0 stars on GitHub
com.github.yhcheng.ppc64native:ppc64native 0.3.0
Genomics native code for PPC64 platforms (LE only)
3 versions - Latest release: about 6 years ago - 0 stars on GitHub
org.campagnelab.goby:goby-io 3.3.1
I/O core of the Goby Framework
14 versions - Latest release: over 6 years ago - 1 dependent package - 2 dependent repositories - 5 stars on GitHub
org.bdgenomics.deca:deca-core_2.11 0.2.0
Sonatype helps open source projects to set up Maven repositories on https://oss.sonatype.org/
2 versions - Latest release: over 6 years ago - 2 dependent packages - 3 stars on GitHub
org.bdgenomics.deca:deca-parent_2.11 0.2.0
Sonatype helps open source projects to set up Maven repositories on https://oss.sonatype.org/
2 versions - Latest release: over 6 years ago - 3 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.10 0.23.0
A fast, scalable genome analysis system
4 versions - Latest release: over 6 years ago - 10 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.10 0.23.0
A fast, scalable genome analysis system
4 versions - Latest release: over 6 years ago - 948 stars on GitHub
Top 9.9% on repo1.maven.org
org.bdgenomics.adam:adam-core_2.11 0.23.0
A fast, scalable genome analysis system
10 versions - Latest release: over 6 years ago - 14 dependent packages - 4 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent_2.11 0.23.0
A fast, scalable genome analysis system
10 versions - Latest release: over 6 years ago - 948 stars on GitHub
Top 6.9% on repo1.maven.org
org.bdgenomics.adam:adam-core_2.10 0.23.0
A fast, scalable genome analysis system
10 versions - Latest release: over 6 years ago - 15 dependent packages - 14 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent_2.10 0.23.0
A fast, scalable genome analysis system
10 versions - Latest release: over 6 years ago - 1 dependent repositories - 948 stars on GitHub
org.hammerlab.bam:seqdoop_2.11 1.1.0
seqdoop
3 versions - Latest release: over 6 years ago - 1 dependent package - 20 stars on GitHub
org.hammerlab.bam:load_2.11 1.1.0
load
3 versions - Latest release: over 6 years ago - 3 dependent packages - 20 stars on GitHub