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org.biojava:biojava-core

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.

Ecosystem
repo1.maven.org
Latest Release
7.2.4
4 months ago
Versions
66
Dependent Packages
25
Dependent Repos
116
org.intermine:bio-source-fasta 5.1.0
InterMine bio sources modules
10 versions - Latest release: over 3 years ago - 241 stars on GitHub
org.intermine:bio-source-delimited 5.1.0
InterMine bio sources modules
3 versions - Latest release: over 3 years ago - 241 stars on GitHub
org.intermine:bio-webapp 5.1.0
InterMine bio modules
10 versions - Latest release: over 3 years ago - 241 stars on GitHub
net.maizegenetics:phg 0.0.40
PHG - Practical Haplotype Graph
50 versions - Latest release: over 3 years ago - 1 dependent repositories
org.biojava:biojava-adam 0.9.0
Biojava and ADAM integration.
10 versions - Latest release: about 4 years ago - 2 stars on GitHub
com.github.e-alharbi:Tool-Parameters-Optimizer 1.1
A tool for optimizing any tool's parameters that can run from the command line
1 version - Latest release: over 5 years ago - 0 stars on GitHub
com.github.e-alharbi:ToolParametersOptimizer 1.1
A tool for optimizing any tool's parameters that can run from the command line
1 version - Latest release: over 5 years ago - 0 stars on GitHub
com.databricks:SnpEff 4.3.1
Variant annotation and effect prediction package.
1 version - Latest release: over 7 years ago - 4 dependent packages - 1 dependent repositories - 1 stars on GitHub
org.biojava:biojava-phylo 4.2.12
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...
20 versions - Latest release: almost 8 years ago - 3 dependent packages - 6 dependent repositories - 613 stars on GitHub
org.biojava:biojava-sequencing 4.2.12
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...
29 versions - Latest release: almost 8 years ago - 3 dependent repositories - 613 stars on GitHub
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Registry repo1.maven.org
Source Repository
Homepage Homepage
Docs Documentation
JSON API View JSON
CodeMeta codemeta.json
Package Details
PURL pkg:maven/org.biojava/biojava-core
spec
License GPL-2.0
Namespace org.biojava
First Release about 11 years ago
Last Synced 15 days ago
Keywords
bioinformatics genomics java parser-library pdb protein-data-bank protein-modification protein-sequences protein-structure sequence-alignment structural-bioinformatics structure-alignment
Repository
Stars 613 on GitHub
Forks 390 on GitHub
Docker Dependents 2
Docker Downloads 15,204
Commits 5799
Committers 115
Avg per Author 50.426
DDS 0.677
commits.ecosyste.ms
repos.ecosyste.ms
Rankings on repo1.maven.org
Overall Top 7.1%
Dependent packages Top 2.6%
Dependent repos Top 1.7%
Forks Top 10.0%
Docker downloads Top 5.9%