Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
spack.io "alignment" keyword
mmseqs2 13-45111
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge pro...2 versions - Latest release: over 1 year ago - 2 dependent packages - 900 stars on GitHub
ngmlr 0.2.7
Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to a reference genome wi...2 versions - Latest release: 10 months ago - 267 stars on GitHub
sortmerna 2017-07-13
SortMeRNA is a program tool for filtering, mapping and OTU-picking NGS reads in metatranscriptomi...1 version - Latest release: about 2 years ago - 169 stars on GitHub
hh-suite 3.3.0
HH-suite is a widely used open source software suite for sensitive sequence similarity searches a...1 version - Latest release: over 1 year ago - 1 dependent package - 420 stars on GitHub
py-pyspoa 0.0.8
Python bindings to spoa1 version - Latest release: over 1 year ago - 1 dependent package - 10 stars on GitHub - 1 maintainer
wtdbg2 2.3
A fuzzy Bruijn graph approach to long noisy reads assembly1 version - Latest release: about 2 years ago - 467 stars on GitHub
Related Keywords
bioinformatics
3
cpp
2
nanopore
2
profile-search
2
pacbio
2
sequence-search
2
python
1
hh-suite
1
hhblits
1
hhpred
1
hhsearch
1
opensource
1
profile-profile-search
1
protein-structure
1
simd
1
viterbi
1
multiple-sequence-alignment
1
poa
1
assembly
1
structural-variations
1
oxford-nanopore
1
next-generation-sequencing
1
mapper
1
long-read
1
docker
1
bioconda
1
taxonomy
1
sequence-clustering
1
mmseqs
1
metagenomics
1
linclust
1
blast
1