Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 3.7% on spack.io
Top 4.4% dependent packages on spack.io
Top 3.8% forks on spack.io
Top 4.4% dependent packages on spack.io
Top 3.8% forks on spack.io
spack.io : bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.
Registry
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Source
- JSON
purl: pkg:spack/bwa
Keywords: bioinformatics, fm-index, genomics, sequence-alignment
License: Other
Latest release: about 2 years ago
First release: about 2 years ago
Dependent packages: 14
Stars: 1,260 on GitHub
Forks: 529 on GitHub
See more repository details: repos.ecosyste.ms
Last synced: 24 days ago
Top 9.5% on spack.io
8 versions - Latest release: about 2 months ago - 2 dependent packages
abyss 2.3.7
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. The...8 versions - Latest release: about 2 months ago - 2 dependent packages
py-ipyrad 0.9.93
An interactive toolkit for assembly and analysis of restriction-site associated genomic data sets...5 versions - Latest release: 3 months ago - 63 stars on GitHub - 1 maintainer
py-quast 5.2.0
Quality Assessment Tool for Genome Assemblies7 versions - Latest release: 6 months ago - 1 maintainer
pgdspider 2.1.1.5
"PGDSpider is a powerful automated data conversion tool for population genetic and genomics prog...2 versions - Latest release: 11 months ago
fastq-screen 0.15.3
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequenc...2 versions - Latest release: 11 months ago
polypolish 0.5.0
Polypolish is a tool for polishing genome assemblies with short reads. Unlike other tools in this...1 version - Latest release: over 1 year ago - 85 stars on GitHub
redundans 0.13c
Redundans pipeline assists an assembly of heterozygous genomes.2 versions - Latest release: about 2 years ago - 99 stars on GitHub
reditools 1.3_2020-03-20
REDItools: python scripts for RNA editing detection by RNA-Seq data. REDItools are simple python ...2 versions - Latest release: about 2 years ago - 44 stars on GitHub - 1 maintainer
py-vcf-kit 0.1.6
VCF-kit is a command-line based collection of utilities for performing analysis on Variant Call F...1 version - Latest release: about 2 years ago - 100 stars on GitHub - 1 maintainer
py-haphpipe 1.0.3
HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.1 version - Latest release: about 2 years ago - 6 stars on GitHub - 1 maintainer
py-breakseq2 2.2
nucleotide-resolution analysis of structural variants1 version - Latest release: about 2 years ago - 1 maintainer
phyluce 1.6.7
phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data coll...1 version - Latest release: about 2 years ago - 68 stars on GitHub - 1 maintainer
hybpiper 1.3.1
HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enrich...2 versions - Latest release: about 2 years ago - 78 stars on GitHub
biopieces 2016-04-12
The Biopieces are a collection of bioinformatics tools that can be pieced together in a very easy...1 version - Latest release: about 2 years ago