Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 0.2% on spack.io
Top 0.4% dependent packages on spack.io
Top 0.4% dependent packages on spack.io
spack.io : java
The free and opensource java implementation
Registry
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Source
- JSON
purl: pkg:spack/java
License: Other
Latest release: about 1 month ago
First release: almost 2 years ago
Dependent packages: 162
Last synced: 7 days ago
lucene 9.10.0
Apache Lucene is a high-performance, full featured text search engine library written in Java.6 versions - Latest release: 11 days ago
Top 0.1% on spack.io
43 versions - Latest release: 17 days ago - 1,159 dependent packages - 1 maintainer
r 4.4.0
R is 'GNU S', a freely available language and environment for statistical computing and graphics ...43 versions - Latest release: 17 days ago - 1,159 dependent packages - 1 maintainer
Top 1.9% on spack.io
20 versions - Latest release: about 1 month ago - 15 dependent packages - 1 maintainer
octave 9.1.0
GNU Octave is a high-level language, primarily intended for numerical computations. It provides a...20 versions - Latest release: about 1 month ago - 15 dependent packages - 1 maintainer
Top 1.1% on spack.io
65 versions - Latest release: about 1 month ago - 30 dependent packages - 1 maintainer
gdal 3.8.5
GDAL: Geospatial Data Abstraction Library. GDAL is a translator library for raster and vector geo...65 versions - Latest release: about 1 month ago - 30 dependent packages - 1 maintainer
mixcr 4.6.0
MiXCR is a universal framework that processes big immunome data from raw sequences to quantitated...3 versions - Latest release: about 1 month ago
Top 2.4% on spack.io
14 versions - Latest release: about 1 month ago - 13 dependent packages
ant 1.10.14
Apache Ant is a Java library and command-line tool whose mission is to drive processes described ...14 versions - Latest release: about 1 month ago - 13 dependent packages
kafka 2.13-3.7.0
Kafka is used for building real-time data pipelines and streaming apps. It is horizontally scala...9 versions - Latest release: about 1 month ago
commons-logging 1.3.0
When writing a library it is very useful to log information. However there are many logging imple...4 versions - Latest release: about 1 month ago - 1 dependent package
hpcviewer 2024.02
Binary distribution of hpcviewer and integrated hpctraceviewer for the Rice HPCToolkit (Linux x86...26 versions - Latest release: about 2 months ago - 1 dependent package - 1 maintainer
Top 2.5% on spack.io
117 versions - Latest release: about 2 months ago - 12 dependent packages - 1 maintainer
bazel 7.0.2
Bazel is an open-source build and test tool similar to Make, Maven, and Gradle. It uses a human-r...117 versions - Latest release: about 2 months ago - 12 dependent packages - 1 maintainer
Top 7.1% on spack.io
28 versions - Latest release: about 2 months ago - 3 dependent packages
picard 3.1.1
Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and ...28 versions - Latest release: about 2 months ago - 3 dependent packages
py-kneaddata 0.12.0
Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from...1 version - Latest release: about 2 months ago - 88 stars on GitHub - 1 maintainer
nextflow 23.10.1
Data-driven computational pipelines.29 versions - Latest release: 2 months ago - 1 dependent package - 2 maintainers
antlr4-complete 4.13.1
This package provides complete ANTLR tool, Java runtime and ST, which lets you run the tool and ...6 versions - Latest release: 4 months ago
igv 2.16.2
The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive ex...3 versions - Latest release: 5 months ago - 1 maintainer
py-quast 5.2.0
Quality Assessment Tool for Genome Assemblies7 versions - Latest release: 5 months ago - 1 maintainer
interproscan 5.63-95.0
InterProScan is the software package that allows sequences (protein and nucleic) to be scanned ag...6 versions - Latest release: 7 months ago - 1 dependent package - 1 maintainer
chexmix 0.52
ChExMix: the ChIP-exo mixture model. ChExMix aims to characterize protein-DNA binding subtypes in...1 version - Latest release: 8 months ago
Top 7.1% on spack.io
8 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
thrift 0.18.1
Software framework for scalable cross-language services development. Thrift combines a software s...8 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
prism 4.7
PRISM is a probabilistic model checker, a tool for formal modelling and analysis of systems that ...2 versions - Latest release: 11 months ago - 1 maintainer
hbase 2.5.4
Apache HBase is an open-source, distributed, versioned, column-oriented store modeled after Googl...8 versions - Latest release: 11 months ago
gradle 8.1.1
Gradle is an open source build automation system that builds upon the concepts of Apache Ant and ...92 versions - Latest release: 11 months ago
canal 1.1.6
Alibaba MySQL binlog incremental subscription & consumer components.4 versions - Latest release: 11 months ago
beast2 2.7.4
BEAST is a cross-platform program for Bayesian inference using MCMC of molecular sequences. It is...6 versions - Latest release: 11 months ago - 1 maintainer
beast-tracer 1.7.2
Tracer is a graphical tool for visualization and diagnostics of MCMC output.2 versions - Latest release: 11 months ago
apktool 2.7.0
A tool for reverse engineering 3rd party, closed, binary Android apps.3 versions - Latest release: 11 months ago
bbmap 37.78
Short read aligner for DNA and RNA-seq data.4 versions - Latest release: 11 months ago - 1 dependent package
r-seurat 4.3.0
Tools for Single Cell Genomics. A toolkit for quality control, analysis, and exploration of singl...11 versions - Latest release: 11 months ago - 1 maintainer
activemq 5.17.3
Apache ActiveMQ is a high performance Apache 2.0 licensed Message Broker and JMS 1.1 implementat...2 versions - Latest release: 11 months ago
aperture-photometry 3.0.2
Aperture Photometry Tool APT is software for astronomical research3 versions - Latest release: 11 months ago - 1 maintainer
r-xlconnect 1.0.7
Excel Connector for R. Provides comprehensive functionality to read, write and format Excel data.8 versions - Latest release: 11 months ago - 1 maintainer
pgdspider 2.1.1.5
"PGDSpider is a powerful automated data conversion tool for population genetic and genomics prog...2 versions - Latest release: 11 months ago
jline3 3.22.0
JLine is a Java library for handling console input.6 versions - Latest release: 11 months ago - 1,196 stars on GitHub
junit4 4.13.2
A programmer-oriented testing framework for Java.3 versions - Latest release: 11 months ago
Top 7.1% on spack.io
5 versions - Latest release: 11 months ago - 4 dependent packages
fastqc 0.12.1
A quality control tool for high throughput sequence data.5 versions - Latest release: 11 months ago - 4 dependent packages
cromwell 85
Cromwell is a Workflow Management System geared towards scientific workflows2 versions - Latest release: 11 months ago
Top 1.3% on spack.io
10 versions - Latest release: almost 1 year ago - 26 dependent packages
graphviz 8.0.5
Graph Visualization Software10 versions - Latest release: almost 1 year ago - 26 dependent packages
alluxio 2.9.3
Alluxio (formerly known as Tachyon) is a virtual distributed storage system. It bridges the gap b...6 versions - Latest release: about 1 year ago
kinesis 2.4.8
The Amazon Kinesis Client Library for Java (Amazon KCL) enables Java developers to easily consume...5 versions - Latest release: about 1 year ago
delta 2.3.0
Delta Lake is a storage layer that brings scalable, ACID transactions to Apache Spark and other b...6 versions - Latest release: about 1 year ago
hazelcast 5.2.3
Hazelcast is an open-source distributed in-memory data store and computation platform. It provide...6 versions - Latest release: about 1 year ago
druid 1.2.8
Druid is one of the best database connection pools written in JAVA. Druid provides powerful monit...9 versions - Latest release: about 1 year ago - 26,656 stars on GitHub
mapserver 8.0.1
MapServer is an Open Source geographic data rendering engine written in C. Beyond browsing GIS da...2 versions - Latest release: about 1 year ago
figtree 1.4.4
FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing pu...2 versions - Latest release: about 1 year ago - 1 dependent package - 322 stars on GitHub
solr 8.11.2
Solr is highly reliable, scalable and fault tolerant, providing distributed indexing, replication...7 versions - Latest release: about 1 year ago
commons-lang3 3.12.0
The standard Java libraries fail to provide enough methods for manipulation of its core classes. ...2 versions - Latest release: about 1 year ago
Top 8.3% on spack.io
3 versions - Latest release: over 1 year ago - 4 dependent packages - 1,429 stars on GitHub - 2 maintainers
py-omegaconf 2.3.0
A hierarchical configuration system, with support for merging configurations from multiple source...3 versions - Latest release: over 1 year ago - 4 dependent packages - 1,429 stars on GitHub - 2 maintainers
minced 0.4.2
MinCED is a program to find Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) i...4 versions - Latest release: over 1 year ago - 1 dependent package - 81 stars on GitHub
r-dismo 1.3-9
Species Distribution Modeling. Methods for species distribution modeling, that is, predicting the...4 versions - Latest release: over 1 year ago - 1 maintainer
sepp 4.5.1
SEPP stands for SATe-enabled phylogenetic placement1 version - Latest release: over 1 year ago - 68 stars on GitHub - 1 maintainer
py-python-javabridge 4.0.3
The python-javabridge package makes it easy to start a Java virtual machine (JVM) from Python and...1 version - Latest release: over 1 year ago - 1 dependent package - 18 stars on GitHub - 1 maintainer
py-unicycler 0.5.0
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets ...6 versions - Latest release: almost 2 years ago - 450 stars on GitHub - 1 maintainer
Top 5.8% on spack.io
11 versions - Latest release: about 2 years ago - 5 dependent packages
hadoop 3.3.2
The Apache Hadoop software library is a framework that allows for the distributed processing of l...11 versions - Latest release: about 2 years ago - 5 dependent packages
beagle 5.4
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.4 versions - Latest release: about 2 years ago - 1 maintainer
astral 5.7.1
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees.3 versions - Latest release: about 2 years ago - 190 stars on GitHub
zookeeper-benchmark master
It is designed to measure the per-request latency of a ZooKeeper ensemble for a predetermined len...1 version - Latest release: about 2 years ago
zipkin 2.21.5
Zipkin is a distributed tracing system. It helps gather timing data needed to troubleshoot latenc...3 versions - Latest release: about 2 years ago
varscan 2.4.2
Variant calling and somatic mutation/CNV detection for next-generation sequencing data1 version - Latest release: about 2 years ago
vardictjava 1.5.1
VarDictJava is a variant discovery program written in Java. It is a partial Java port of VarDict ...1 version - Latest release: about 2 years ago - 118 stars on GitHub
Top 3.1% on spack.io
23 versions - Latest release: about 2 years ago - 12 dependent packages - 1 maintainer
ucx 1.12.1
a communication library implementing high-performance messaging for MPI/PGAS frameworks23 versions - Latest release: about 2 years ago - 12 dependent packages - 1 maintainer
Top 7.1% on spack.io
5 versions - Latest release: about 2 years ago - 3 dependent packages
trinity 2.6.6
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a no...5 versions - Latest release: about 2 years ago - 3 dependent packages
trimmomatic 0.33
A flexible read trimming tool for Illumina NGS data.4 versions - Latest release: about 2 years ago - 2 dependent packages
tfel 4.0.0
The TFEL project is a collaborative development of CEA (French Alternative Energies and Atomic E...48 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
testdfsio 0.0.1
A corrected and enhanced version of Apache Hadoop TestDFSIO1 version - Latest release: about 2 years ago - 5 stars on GitHub
Top 7.0% on spack.io
3 versions - Latest release: about 2 years ago - 1 dependent package - 49,738 stars on GitHub
tesseract 4.1.1
Tesseract Open Source OCR Engine.3 versions - Latest release: about 2 years ago - 1 dependent package - 49,738 stars on GitHub
Top 7.1% on spack.io
22 versions - Latest release: about 2 years ago - 3 dependent packages - 4 maintainers
tau 2.30.2
A portable profiling and tracing toolkit for performance analysis of parallel programs written in...22 versions - Latest release: about 2 years ago - 3 dependent packages - 4 maintainers
tassel 2017-07-22
TASSEL is a software package to evaluate traits associations, evolutionary patterns, and linkage ...1 version - Latest release: about 2 years ago - 1 maintainer
tajo 0.11.3
Tajo is a relational and distributed data warehouse system for Hadoop Tajo is designed for low-l...6 versions - Latest release: about 2 years ago
sumo 1.5.0
Eclipse SUMO is an open source, highly portable, microscopic and continuous road traffic simulati...1 version - Latest release: about 2 years ago
storm 2.3.0
Storm is a distributed realtime computation system. Similar to how Hadoop provides a set of gene...5 versions - Latest release: about 2 years ago
Top 7.1% on spack.io
4 versions - Latest release: about 2 years ago - 3 dependent packages
stc 0.9.0
STC: The Swift-Turbine Compiler4 versions - Latest release: about 2 years ago - 3 dependent packages
sqoop 1.99.7
Apache Sqoop is a tool designed for efficiently transferring bulk data between Apache Hadoop and ...1 version - Latest release: about 2 years ago
sqlite-jdbc 3.32.3
SQLite JDBC, developed by Taro L. Saito, is a library for accessing and creating SQLite database ...3 versions - Latest release: about 2 years ago - 2,343 stars on GitHub
spark 3.1.1
Apache Spark is a fast and general engine for large-scale data processing.11 versions - Latest release: about 2 years ago - 1 dependent package
slider 0.92.0 removed
Slider is a framework for deployment and management of these long- running data access applicatio...3 versions - Latest release: about 2 years ago
slf4j 1.7.30
The Simple Logging Facade for Java (SLF4J) serves as a simple facade or abstraction for various l...5 versions - Latest release: about 2 years ago
shiro 1.6.0
Apache Shiro is a powerful and easy-to-use Java security framework that performs authentication, ...2 versions - Latest release: about 2 years ago
scala 2.13.1
Scala is a general-purpose programming language providing support for functional programming and ...7 versions - Latest release: about 2 years ago
Top 9.5% on spack.io
10 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
sbml 5.18.0
Library for the Systems Biology Markup Language10 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
rstudio 1.4.1717
RStudio is an integrated development environment (IDE) for R.1 version - Latest release: about 2 years ago
rose develop
A compiler infrastructure to build source-to-source program transformation and analysis tools. (D...2 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
rocketmq 4.6.0
Apache RocketMQ is a distributed messaging and streaming platform with low latency, high perform...6 versions - Latest release: about 2 years ago
rdptools 2.0.2
Collection of commonly used RDP Tools for easy building.1 version - Latest release: about 2 years ago - 1 dependent package - 45 stars on GitHub
rdp-classifier 2.12
The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxono...1 version - Latest release: about 2 years ago - 1 dependent package
r-xlsx 0.6.5
Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files. Provide R functions to read/write...2 versions - Latest release: about 2 years ago - 1 maintainer
r-xlconnectjars 0.2-9
JAR Dependencies for the XLConnect Package. Provides external JAR dependencies for the XLConnect ...4 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 5.8% on spack.io
4 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
r-rjava 0.9-8
Low-Level R to Java Interface. Low-level interface to Java VM very much like .C/.Call and friends...4 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
quartz 2.3.2
Quartz is a richly featured, open source job scheduling library that can be integrated within vir...2 versions - Latest release: about 2 years ago
qualimap 2.2.1
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graph...1 version - Latest release: about 2 years ago
qorts 1.2.42
The QoRTs software package is a fast, efficient, and portable multifunction toolkit designed to a...1 version - Latest release: about 2 years ago - 50 stars on GitHub - 1 maintainer
py-pyjnius 1.3.0.0
Pyjnius is a Python library for accessing Java classes.1 version - Latest release: about 2 years ago - 1 maintainer
py-pipits 1.5.0
Automated pipeline for analyses of fungal ITS from the Illumina2 versions - Latest release: about 2 years ago - 27 stars on GitHub - 1 maintainer
py-jpype1 0.6.3
JPype is an effort to allow python programs full access to java class libraries.4 versions - Latest release: about 2 years ago - 1 maintainer
py-crispresso 1.0.8 removed
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from deep sequencing da...1 version - Latest release: about 2 years ago - 121 stars on GitHub - 2 maintainers
presto 0.238.2
Presto is a distributed SQL query engine for big data.10 versions - Latest release: about 2 years ago
plplot 5.15.0
PLplot is a cross-platform package for creating scientific plots.5 versions - Latest release: about 2 years ago - 1 dependent package
pilon 1.13
Pilon is an automated genome assembly improvement and variant detection tool.2 versions - Latest release: about 2 years ago - 1 dependent package - 295 stars on GitHub
phoenix master
Apache Phoenix is a SQL skin over HBase delivered as a client-embedded JDBC driver targeting low ...1 version - Latest release: about 2 years ago