Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
spack.io : r-gviz : 1.26.5
Plotting data and annotation information along genomic coordinates. Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
Registry -
JSON
purl: pkg:spack/[email protected]
Published:
Indexed:
Dependencies
- r *
- r-annotationdbi *
- r-biobase *
- r-biocgenerics *
- r-biomart *
- r-biostrings *
- r-biovizbase *
- r-bsgenome *
- r-digest *
- r-ensembldb *
- r-genomeinfodb *
- r-genomicalignments *
- r-genomicfeatures *
- r-genomicranges *
- r-iranges *
- r-lattice *
- r-latticeextra *
- r-matrixstats *
- r-rcolorbrewer *
- r-rsamtools *
- r-rtracklayer *
- r-s4vectors *
- r-xvector *