Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "MotifAnnotation" keyword
motifTestR 1.0.0
Perform key tests for binding motifs in sequence data2 versions - Latest release: about 1 month ago - 381 downloads total - 0 stars on GitHub - 1 maintainer
DiffLogo 2.26.0
DiffLogo: A comparative visualisation of biooligomer motifs3 versions - Latest release: 7 months ago - 12.8 thousand downloads total - 7 stars on GitHub
periodicDNA 1.12.0
Set of tools to identify periodic occurrences of k-mers in DNA sequences3 versions - Latest release: 6 months ago - 3.69 thousand downloads total - 4 stars on GitHub - 1 maintainer
motifbreakR 2.16.0
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription F...3 versions - Latest release: 6 months ago - 20.3 thousand downloads total - 24 stars on GitHub - 1 maintainer
motifcounter 1.26.0
R package for analysing TFBSs in DNA sequences3 versions - Latest release: 7 months ago - 20.2 thousand downloads total - 1 maintainer
Top 7.4% on bioconductor.org
3 versions - Latest release: 7 months ago - 38 thousand downloads total - 1 maintainer
ELMER 2.26.0
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes3 versions - Latest release: 7 months ago - 38 thousand downloads total - 1 maintainer
MatrixRider 1.34.0
Obtain total affinity and occupancies for binding site matrices on a given sequence3 versions - Latest release: 7 months ago - 12.6 thousand downloads total - 1 maintainer
Top 6.2% on bioconductor.org
3 versions - Latest release: 7 months ago - 2 dependent packages - 39.5 thousand downloads total - 1 maintainer
PWMEnrich 4.38.0
PWM enrichment analysis3 versions - Latest release: 7 months ago - 2 dependent packages - 39.5 thousand downloads total - 1 maintainer
atSNP 1.18.0
Affinity test for identifying regulatory SNPs3 versions - Latest release: 7 months ago - 6.67 thousand downloads total - 1 stars on GitHub - 1 maintainer
enrichTF 1.18.0
Transcription Factors Enrichment Analysis3 versions - Latest release: 7 months ago - 6.82 thousand downloads total - 2 stars on GitHub - 1 maintainer
LedPred 1.36.0
Learning from DNA to Predict Enhancers3 versions - Latest release: 7 months ago - 11.1 thousand downloads total - 3 stars on GitHub - 1 maintainer
seqArchRplus 1.2.0
Downstream analyses of promoter sequence architectures and HTML report generation3 versions - Latest release: 7 months ago - 1.51 thousand downloads total - 0 stars on GitHub - 1 maintainer
universalmotif 1.20.0
Import, Modify, and Export Motifs with R3 versions - Latest release: 7 months ago - 4 dependent packages - 28.5 thousand downloads total - 1 maintainer
SELEX 1.34.0
Functions for analyzing SELEX-seq data3 versions - Latest release: 7 months ago - 12.8 thousand downloads total - 1 maintainer
RCAS 1.28.3
RNA Centric Annotation System4 versions - Latest release: 3 months ago - 1 dependent package - 13.1 thousand downloads total - 1 maintainer
branchpointer 1.28.0
Prediction of intronic splicing branchpoints3 versions - Latest release: 7 months ago - 10.5 thousand downloads total - 1 maintainer
coMET 1.34.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...3 versions - Latest release: 7 months ago - 21.1 thousand downloads total - 1 maintainer
monaLisa 1.10.0
Binned Motif Enrichment Analysis and Visualization4 versions - Latest release: 21 days ago - 5.13 thousand downloads total - 30 stars on GitHub - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 23 days ago - 11 dependent packages - 90.2 thousand downloads total - 1 maintainer
motifmatchr 1.26.0
Fast Motif Matching in R3 versions - Latest release: 23 days ago - 11 dependent packages - 90.2 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 24 days ago - 18 dependent packages - 102 thousand downloads total - 1 maintainer
MotifDb 1.46.0
An Annotated Collection of Protein-DNA Binding Sequence Motifs3 versions - Latest release: 24 days ago - 18 dependent packages - 102 thousand downloads total - 1 maintainer
Top 3.6% on bioconductor.org
3 versions - Latest release: 23 days ago - 10 dependent packages - 106 thousand downloads total - 1 maintainer
motifStack 1.48.0
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence3 versions - Latest release: 23 days ago - 10 dependent packages - 106 thousand downloads total - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: 24 days ago - 17 dependent packages - 288 thousand downloads total - 23 stars on GitHub - 1 maintainer
TFBSTools 1.42.0
Software Package for Transcription Factor Binding Site (TFBS) Analysis3 versions - Latest release: 24 days ago - 17 dependent packages - 288 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 3.8% on bioconductor.org
3 versions - Latest release: 24 days ago - 77.5 thousand downloads total - 1 maintainer
RcisTarget 1.24.0
RcisTarget Identify transcription factor binding motifs enriched on a list of genes or genomic re...3 versions - Latest release: 24 days ago - 77.5 thousand downloads total - 1 maintainer
memes 1.12.0
motif matching, comparison, and de novo discovery using the MEME Suite3 versions - Latest release: 24 days ago - 8.72 thousand downloads total - 43 stars on GitHub - 1 maintainer
Related Keywords
Software
24
GeneRegulation
7
Transcription
7
SequenceMatching
7
Visualization
7
MotifDiscovery
6
ChIPSeq
6
DataImport
4
Alignment
4
Sequencing
4
GenomeAnnotation
3
GeneTarget
3
Coverage
2
GO
2
DNAMethylation
2
Transcriptomics
2
GeneSetEnrichment
2
Genetics
2
FunctionalGenomics
2
Microarray
2
GenomeWideAssociation
1
DifferentialMethylation
1
ExomeSeq
1
MethylSeq
1
MethylationArray
1
RNASeq
1
RiboSeq
1
Epigenetics
1
FeatureExtraction
1
ChIPchip
1
DNASeq
1
GenomicVariation
1
ReportWriting
1
Clustering
1
Annotation
1
SupportVectorMachine
1
Classification
1
GraphAndNetwork
1
Network
1
GeneExpression
1
MultipleComparison
1
ChipOnChip
1