Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "GenomeWideAssociation" keyword
methodical 1.0.0
Discovering genomic regions where methylation is strongly associated with transcriptional activity1 version - Latest release: about 1 month ago - 346 downloads total - 0 stars on GitHub - 1 maintainer
SAIGEgds 2.2.1
Scalable Implementation of Generalized mixed models using GDS files in Phenome-Wide Association S...4 versions - Latest release: 3 months ago - 7.65 thousand downloads total - 7 stars on GitHub - 1 maintainer
Qtlizer 1.16.0
Comprehensive QTL annotation of GWAS results3 versions - Latest release: 6 months ago - 6.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
pathwayPCA 1.18.0
Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection3 versions - Latest release: 6 months ago - 1 dependent package - 7.56 thousand downloads total - 11 stars on GitHub - 1 maintainer
REMP 1.26.0
Repetitive Element Methylation Prediction3 versions - Latest release: 6 months ago - 11.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
gwasurvivr 1.20.0
gwasurvivr: an R package for genome wide survival analysis3 versions - Latest release: 6 months ago - 9.71 thousand downloads total - 9 stars on GitHub - 1 maintainer
GeneGeneInteR 1.28.0
Tools for Testing Gene-Gene Interaction at the Gene Level3 versions - Latest release: 7 months ago - 10.7 thousand downloads total - 1 maintainer
bacon 1.30.0
Controlling bias and inflation in association studies using the empirical null distribution3 versions - Latest release: 7 months ago - 16.9 thousand downloads total - 1 maintainer
GGPA 1.14.0
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architec...3 versions - Latest release: 7 months ago - 4.23 thousand downloads total - 1 stars on GitHub - 1 maintainer
anota2seq 1.24.0
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq3 versions - Latest release: 7 months ago - 11.1 thousand downloads total - 2 maintainers
PanViz 1.4.0
Integrating Multi-Omic Network Data With Summay-Level GWAS Data3 versions - Latest release: 7 months ago - 1.66 thousand downloads total - 3 stars on GitHub - 1 maintainer
nullranges 1.8.0
Generation of null ranges via bootstrapping or covariate matching3 versions - Latest release: 7 months ago - 1 dependent package - 4.44 thousand downloads total - 22 stars on GitHub - 1 maintainer
hierinf 1.20.0
Hierarchical Inference3 versions - Latest release: 7 months ago - 5.33 thousand downloads total - 1 maintainer
GPA 1.14.0
GPA (Genetic analysis incorporating Pleiotropy and Annotation)3 versions - Latest release: 7 months ago - 4.2 thousand downloads total - 8 stars on GitHub - 1 maintainer
diffuStats 1.22.0
Diffusion scores on biological networks3 versions - Latest release: 7 months ago - 9.33 thousand downloads total - 1 maintainer
geneAttribution 1.28.0
Identification of candidate genes associated with genetic variation3 versions - Latest release: 7 months ago - 10 thousand downloads total - 1 maintainer
RVS 1.24.0
Computes estimates of the probability of related individuals sharing a rare variant3 versions - Latest release: 7 months ago - 7.86 thousand downloads total - 1 maintainer
ASSET 2.20.0
An R package for subset-based association analysis of heterogeneous traits and subtypes3 versions - Latest release: 7 months ago - 1 dependent package - 22 thousand downloads total - 1 maintainer
ASAFE 1.28.0
Ancestry Specific Allele Frequency Estimation3 versions - Latest release: 7 months ago - 10.3 thousand downloads total - 1 maintainer
SISPA 1.32.0 removed
SISPA: Method for Sample Integrated Set Profile Analysis2 versions - Latest release: 7 months ago - 13.4 thousand downloads total - 1 maintainer
iCARE 1.30.0
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)3 versions - Latest release: 7 months ago - 13.9 thousand downloads total - 1 maintainer
GEM 1.28.0
GEM: fast association study for the interplay of Gene, Environment and Methylation3 versions - Latest release: 7 months ago - 10 thousand downloads total - 1 maintainer
globalSeq 1.30.0
Global Test for Counts3 versions - Latest release: 7 months ago - 10.4 thousand downloads total - 1 stars on GitHub - 1 maintainer
Pi 2.14.0
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene and Pathway Level3 versions - Latest release: 7 months ago - 17.9 thousand downloads total - 1 maintainer
BG2 1.2.0
Performs Bayesian GWAS analysis for non-Gaussian data using BG23 versions - Latest release: 7 months ago - 1.3 thousand downloads total - 1 maintainer
ggmanh 1.6.0
Visualization Tool for GWAS Result3 versions - Latest release: 7 months ago - 1 dependent package - 3.27 thousand downloads total - 1 maintainer
GWAS.BAYES 1.12.0
Bayesian analysis of Gaussian GWAS data3 versions - Latest release: 7 months ago - 3.6 thousand downloads total - 1 maintainer
metaCCA 1.30.0
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Cano...3 versions - Latest release: 7 months ago - 13.2 thousand downloads total - 1 maintainer
CNVRanger 1.18.1
Summarization and expression/phenotype association of CNV ranges4 versions - Latest release: 2 months ago - 8.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
coMET 1.34.0
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methyl...3 versions - Latest release: 7 months ago - 21.1 thousand downloads total - 1 maintainer
rqt 1.28.0
rqt: utilities for gene-level meta-analysis3 versions - Latest release: 7 months ago - 8.75 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
3 versions - Latest release: 20 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
GENESIS 2.34.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...3 versions - Latest release: 20 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
InterMineR 1.26.0
R Interface with InterMine-Powered Databases4 versions - Latest release: 23 days ago - 10.4 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 5.1% on bioconductor.org
2 versions - Latest release: 7 months ago - 56.5 thousand downloads total - 1 maintainer
GISPA 1.26.0 removed
GISPA: Method for Gene Integrated Set Profile Analysis2 versions - Latest release: 7 months ago - 56.5 thousand downloads total - 1 maintainer
martini 1.24.0
GWAS Incorporating Networks3 versions - Latest release: 24 days ago - 7.58 thousand downloads total - 4 stars on GitHub - 1 maintainer
coMethDMR 1.8.0
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide ...3 versions - Latest release: 25 days ago - 2.21 thousand downloads total - 7 stars on GitHub - 1 maintainer
cageminer 1.10.0
Candidate Gene Miner3 versions - Latest release: 25 days ago - 2.64 thousand downloads total - 1 stars on GitHub - 1 maintainer
gcatest 2.4.0
Genotype Conditional Association TEST3 versions - Latest release: 27 days ago - 10.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
MungeSumstats 1.12.0
Standardise summary statistics from GWAS4 versions - Latest release: about 1 month ago - 23 thousand downloads total - 64 stars on GitHub - 1 maintainer
Related Keywords
Software
39
SNP
22
Genetics
17
GeneExpression
11
StatisticalMethod
10
Regression
9
MultipleComparison
7
DifferentialExpression
6
RNASeq
6
DNAMethylation
6
MethylationArray
6
Network
5
Sequencing
5
Microarray
5
FunctionalGenomics
5
GeneSetEnrichment
5
genomics
4
GraphAndNetwork
4
GeneticVariability
4
Preprocessing
4
Transcriptomics
4
PrincipalComponent
4
GenomicVariation
4
gwas
4
Visualization
4
DimensionReduction
4
Epigenetics
4
LinkageDisequilibrium
4
Bayesian
3
ImmunoOncology
3
Clustering
3
Classification
3
GeneRegulation
3
DifferentialMethylation
3
Survival
3
Proteomics
3
Pathways
3
ExomeSeq
3
Metabolomics
3
GeneTarget
3
WholeGenome
3
Reactome
2
KEGG
2
FunctionalPrediction
2
Normalization
2
GenomeAnnotation
2
MethylSeq
2
AssayDomain
2
ChIPSeq
2
BatchEffect
2
r
2
bioconductor-package
2
BiomedicalInformatics
2
bioinformatics
2
QualityControl
2
CopyNumberVariation
2
VariantAnnotation
2
r-package
2
SystemsBiology
2
Transcription
2
FeatureExtraction
2
ComparativeGenomics
2
GenePrediction
2
BiocViews
1
RiboSeq
1
MotifAnnotation
1
DNASeq
1
HiC
1
phewas
1
AlternativeSplicing
1
GO
1
biology
1
intermine
1
network-analysis
1
snps
1
systems-biology
1
NetworkEnrichment
1
database-api
1
qtl
1
standardisation
1
summary-statistics
1
vcf-files
1
mixed-model
1
eqtl
1
variant-annotation
1
CellBiology
1
GeneSignaling
1
Lipidomics
1
gds
1
DataImport
1
MultiChannel
1
TwoChannel
1
Pharmacogenomics
1
ATACSeq
1
Annotation
1
DNaseSeq
1
HiddenMarkovModel
1
HistoneModification
1
bioconductor
1
bootstrap
1