Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "microbiome" keyword
dar 1.0.0
Differential Abundance Analysis by Consensus1 version - Latest release: about 1 month ago - 335 downloads total - 1 stars on GitHub - 1 maintainer
Top 3.5% on bioconductor.org
3 versions - Latest release: 25 days ago - 2 dependent packages - 730 thousand downloads total - 455 stars on GitHub - 1 maintainer
dada2 1.32.0
Accurate, high-resolution sample inference from amplicon sequencing data3 versions - Latest release: 25 days ago - 2 dependent packages - 730 thousand downloads total - 455 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 116 thousand downloads total - 273 stars on GitHub - 1 maintainer
microbiome 1.24.0
Microbiome Analytics3 versions - Latest release: 6 months ago - 2 dependent packages - 116 thousand downloads total - 273 stars on GitHub - 1 maintainer
decontam 1.22.0
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data3 versions - Latest release: 6 months ago - 1 dependent package - 59.3 thousand downloads total - 133 stars on GitHub - 1 maintainer
Top 6.7% on bioconductor.org
3 versions - Latest release: about 1 month ago - 7 dependent packages - 49.1 thousand downloads total - 43 stars on GitHub - 1 maintainer
mia 1.12.0
Microbiome analysis3 versions - Latest release: about 1 month ago - 7 dependent packages - 49.1 thousand downloads total - 43 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
4 versions - Latest release: 21 days ago - 20.1 thousand downloads total - 160 stars on GitHub - 1 maintainer
MicrobiotaProcess 1.16.0
A comprehensive R package for managing and analyzing microbiome and other ecological data within ...4 versions - Latest release: 21 days ago - 20.1 thousand downloads total - 160 stars on GitHub - 1 maintainer
Top 9.8% on bioconductor.org
3 versions - Latest release: 28 days ago - 3 dependent packages - 50.4 thousand downloads total - 89 stars on GitHub - 1 maintainer
ANCOMBC 2.6.0
Microbiome differential abudance and correlation analyses with bias correction3 versions - Latest release: 28 days ago - 3 dependent packages - 50.4 thousand downloads total - 89 stars on GitHub - 1 maintainer
benchdamic 1.10.0
Benchmark of differential abundance methods on microbiome data5 versions - Latest release: 24 days ago - 3.07 thousand downloads total - 5 stars on GitHub - 1 maintainer
microbiomeMarker 1.10.0
microbiome biomarker analysis toolkit4 versions - Latest release: 24 days ago - 13.5 thousand downloads total - 160 stars on GitHub - 1 maintainer
sccomp 1.8.0
Robust Outlier-aware Estimation of Composition and Heterogeneity for Single-cell Data3 versions - Latest release: 28 days ago - 2.66 thousand downloads total - 75 stars on GitHub - 1 maintainer
Related Keywords
Software
10
Microbiome
9
Metagenomics
6
Sequencing
6
Normalization
4
metagenomics
4
MultipleComparison
3
bioconductor
3
DifferentialExpression
3
differential-abundance-analysis
3
ImmunoOncology
3
r
2
microbiome-analysis
2
r-package
2
metabarcoding
2
bioinformatics
2
amplicon
2
Classification
2
rstats
2
phyloseq
2
microbiology
2
biomarker-discovery
2
benchmark
1
differential-abundance-methods
1
lefse
1
Clustering
1
GeneExpression
1
Preprocessing
1
RNASeq
1
SingleCell
1
Transcriptomics
1
batch-correction
1
bayesian
1
composition
1
cytof
1
differential-proportion
1
multilevel
1
proportions
1
random-effects
1
single-cell
1
unwanted-variation
1
feature-selection
1
taxonomy
1
SystemsBiology
1
hitchip
1
hitchip-atlas
1
human-microbiome
1
population-study
1
contamination
1
DataImport
1
analysis
1
FeatureExtraction
1
Visualization
1
microbiome-data
1
ancom
1
ancombc
1
ancombc2
1
correlation
1
normalization
1
secom
1
sequencing
1