Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "rstats" keyword
dar 1.0.0
Differential Abundance Analysis by Consensus1 version - Latest release: about 1 month ago - 335 downloads total - 1 stars on GitHub - 1 maintainer
tpSVG 0.99.7
Thin plate models to detect spatially variable genes2 versions - Latest release: about 1 month ago - 292 downloads total - 0 stars on GitHub - 1 maintainer
Top 1.4% on bioconductor.org
3 versions - Latest release: 30 days ago - 47 dependent packages - 1.87 million downloads total - 82 stars on GitHub - 1 maintainer
GEOquery 2.72.0
Get data from NCBI Gene Expression Omnibus (GEO)3 versions - Latest release: 30 days ago - 47 dependent packages - 1.87 million downloads total - 82 stars on GitHub - 1 maintainer
RLSeq 1.6.0
RLSeq: An analysis package for R-loop mapping data3 versions - Latest release: 8 months ago - 2.39 thousand downloads total - 2 stars on GitHub - 1 maintainer
CompoundDb 1.6.0
Creating and Using (Chemical) Compound Annotation Databases3 versions - Latest release: 7 months ago - 3 dependent packages - 16.9 thousand downloads total - 16 stars on GitHub - 1 maintainer
hermes 1.6.1 💰
Preprocessing, analyzing, and reporting of RNA-seq data4 versions - Latest release: about 2 months ago - 3.31 thousand downloads total - 11 stars on GitHub - 1 maintainer
planttfhunter 1.2.0
Identification and classification of plant transcription factors3 versions - Latest release: 7 months ago - 1.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 8.7% on bioconductor.org
3 versions - Latest release: 6 months ago - 1 dependent package - 24.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
regionReport 1.36.0
Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results3 versions - Latest release: 6 months ago - 1 dependent package - 24.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
categoryCompare 1.46.0
Meta-analysis of high-throughput experiments using feature annotations3 versions - Latest release: 7 months ago - 23.7 thousand downloads total - 5 stars on GitHub - 1 maintainer
BiocPkgTools 1.20.0
Collection of simple tools for learning about Bioconductor Packages3 versions - Latest release: 6 months ago - 13 thousand downloads total - 19 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
4 versions - Latest release: 6 months ago - 19 dependent packages - 157 thousand downloads total - 16 stars on GitHub - 1 maintainer
MsCoreUtils 1.14.1
Core Utils for Mass Spectrometry Data4 versions - Latest release: 6 months ago - 19 dependent packages - 157 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
4 versions - Latest release: 25 days ago - 15 dependent packages - 47.5 thousand downloads total - 31 stars on GitHub - 1 maintainer
Spectra 1.14.0
Spectra Infrastructure for Mass Spectrometry Data4 versions - Latest release: 25 days ago - 15 dependent packages - 47.5 thousand downloads total - 31 stars on GitHub - 1 maintainer
syntenet 1.4.2
Inference And Analysis Of Synteny Networks4 versions - Latest release: about 1 month ago - 1 dependent package - 3.4 thousand downloads total - 14 stars on GitHub - 1 maintainer
megadepth 1.12.0
megadepth: BigWig and BAM related utilities3 versions - Latest release: 7 months ago - 2 dependent packages - 6.86 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 2.9% on bioconductor.org
3 versions - Latest release: 29 days ago - 8 dependent packages - 85.8 thousand downloads total - 287 stars on GitHub - 1 maintainer
karyoploteR 1.30.0
Plot customizable linear genomes displaying arbitrary data3 versions - Latest release: 29 days ago - 8 dependent packages - 85.8 thousand downloads total - 287 stars on GitHub - 1 maintainer
Voyager 1.4.0
From geospatial to spatial omics3 versions - Latest release: 7 months ago - 2.86 thousand downloads total - 60 stars on GitHub - 1 maintainer
CBEA 1.3.0
Competitive Balances for Taxonomic Enrichment Analysis in R3 versions - Latest release: 8 months ago - 2.75 thousand downloads total - 5 stars on GitHub - 1 maintainer
CopyNumberPlots 1.18.0
Create Copy-Number Plots using karyoploteR functionality3 versions - Latest release: 7 months ago - 2 dependent packages - 9.48 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
3 versions - Latest release: about 1 month ago - 6 dependent packages - 52.7 thousand downloads total - 40 stars on GitHub - 1 maintainer
recount 1.30.0
Explore and download data from the recount project3 versions - Latest release: about 1 month ago - 6 dependent packages - 52.7 thousand downloads total - 40 stars on GitHub - 1 maintainer
PSMatch 1.6.0
Handling and Managing Peptide Spectrum Matches3 versions - Latest release: 7 months ago - 2 dependent packages - 6.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
decoupleR 2.9.7
decoupleR: Ensemble of computational methods to infer biological activities from omics data3 versions - Latest release: 18 days ago - 3 dependent packages - 25.4 thousand downloads total - 154 stars on GitHub - 1 maintainer
Top 9.4% on bioconductor.org
4 versions - Latest release: 21 days ago - 20.1 thousand downloads total - 160 stars on GitHub - 1 maintainer
MicrobiotaProcess 1.16.0
A comprehensive R package for managing and analyzing microbiome and other ecological data within ...4 versions - Latest release: 21 days ago - 20.1 thousand downloads total - 160 stars on GitHub - 1 maintainer
escheR 1.3.2
Unified multi-dimensional visualizations with Gestalt principles3 versions - Latest release: 24 days ago - 2 dependent packages - 1.93 thousand downloads total - 3 stars on GitHub - 1 maintainer
QFeatures 1.14.1
Quantitative features for mass spectrometry data4 versions - Latest release: 21 days ago - 6 dependent packages - 35.5 thousand downloads total - 20 stars on GitHub - 1 maintainer
scMerge 1.20.0
scMerge: Merging multiple batches of scRNA-seq data3 versions - Latest release: 21 days ago - 2 dependent packages - 23.4 thousand downloads total - 62 stars on GitHub - 1 maintainer
POMA 1.14.0
Tools for Omics Data Analysis3 versions - Latest release: 22 days ago - 1 dependent package - 4.86 thousand downloads total - 10 stars on GitHub - 1 maintainer
cogeqc 1.8.0
Systematic quality checks on comparative genomics analyses4 versions - Latest release: 25 days ago - 2.43 thousand downloads total - 8 stars on GitHub - 1 maintainer
magrene 1.6.0
Motif Analysis In Gene Regulatory Networks3 versions - Latest release: 25 days ago - 1.45 thousand downloads total - 1 stars on GitHub - 1 maintainer
doubletrouble 1.4.0
Identification and classification of duplicated genes6 versions - Latest release: 25 days ago - 1.65 thousand downloads total - 7 stars on GitHub - 1 maintainer
MsBackendMsp 1.8.0
Mass Spectrometry Data Backend for NIST msp Files3 versions - Latest release: 25 days ago - 4.83 thousand downloads total - 4 stars on GitHub - 1 maintainer
qsvaR 1.8.0
Generate Quality Surrogate Variable Analysis for Degradation Correction3 versions - Latest release: about 1 month ago - 2.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
regutools 1.16.0
regutools: an R package for data extraction from RegulonDB3 versions - Latest release: about 1 month ago - 4.33 thousand downloads total - 4 stars on GitHub - 1 maintainer
TREG 1.8.0
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data3 versions - Latest release: about 1 month ago - 1.75 thousand downloads total - 4 stars on GitHub - 1 maintainer
brainflowprobes 1.18.0
Plots and annotation for choosing BrainFlow target probe sequence3 versions - Latest release: about 1 month ago - 4.96 thousand downloads total - 0 stars on GitHub - 1 maintainer
biocthis 1.14.0
Automate package and project setup for Bioconductor packages3 versions - Latest release: about 1 month ago - 2 dependent packages - 16.4 thousand downloads total - 49 stars on GitHub - 1 maintainer
derfinderPlot 1.38.0
Plotting functions for derfinder3 versions - Latest release: about 1 month ago - 3 dependent packages - 21.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
recount3 1.14.0
Explore and download data from the recount3 project3 versions - Latest release: about 1 month ago - 14.1 thousand downloads total - 27 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
3 versions - Latest release: about 1 month ago - 1 dependent package - 59 thousand downloads total - 0 stars on GitHub - 1 maintainer
derfinderHelper 1.38.0
derfinder helper package3 versions - Latest release: about 1 month ago - 1 dependent package - 59 thousand downloads total - 0 stars on GitHub - 1 maintainer
Top 4.5% on bioconductor.org
3 versions - Latest release: about 1 month ago - 6 dependent packages - 67.7 thousand downloads total - 42 stars on GitHub - 1 maintainer
derfinder 1.38.0
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via ...3 versions - Latest release: about 1 month ago - 6 dependent packages - 67.7 thousand downloads total - 42 stars on GitHub - 1 maintainer
Related Keywords
Software
39
bioconductor
23
r
16
Sequencing
14
RNASeq
11
Visualization
10
Coverage
10
DifferentialExpression
9
GeneExpression
9
DataImport
8
Transcriptomics
8
bioinformatics
7
r-package
7
MassSpectrometry
6
derfinder
6
Infrastructure
6
mass-spectrometry
6
rnaseq
5
FunctionalGenomics
5
Metabolomics
5
Proteomics
5
ImmunoOncology
5
Normalization
5
Network
5
Transcription
5
Classification
4
metabolomics
4
proteomics
4
Preprocessing
4
ComparativeGenomics
3
OneChannel
3
QualityControl
3
SingleCell
3
StatisticalMethod
3
Phylogenetics
3
Spatial
3
SystemsBiology
3
Microbiome
3
human
3
MultipleComparison
3
comparative-genomics
3
annotation-agnostic
3
Metagenomics
2
WholeGenome
2
deseq2
2
NetworkInference
2
GraphAndNetwork
2
gene
2
exon
2
count
2
illumina
2
junction
2
recount
2
GeneRegulation
2
exploratory-data-analysis
2
single-cell
2
genomics-visualization
2
data-visualization
2
BatchEffect
2
DNASeq
2
CopyNumberVariation
2
ChIPSeq
2
recount3
2
network-science
2
evolutionary-genomics
2
microbiome
2
DimensionReduction
2
Regression
2
genomics
2
Annotation
2
ReportWriting
2
DifferentialPeakCalling
2
GenomeAssembly
1
rnascope
1
scrna-seq
1
smfish
1
NetworkEnrichment
1
snrna-seq
1
treg
1
visualization
1
ExperimentalDesign
1
spatial-omics
1
FlowCytometry
1
multidimensional
1
GeneTarget
1
actions
1
microbiome-data
1
microbiome-analysis
1
FeatureExtraction
1
motif-analysis
1
peptide-spectrum-matches
1
gene-regulatory-network
1
biocthis
1
github
1
styler
1
usethis
1
mouse
1
network-motifs
1
workflow
1
user-friendly
1