Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "scrna-seq" keyword
BgeeCall 1.18.1
Automatic RNA-Seq present/absent gene expression calls generation4 versions - Latest release: 7 months ago - 5.16 thousand downloads total - 3 stars on GitHub - 1 maintainer
cardelino 1.4.0
Clone Identification from Single Cell Data3 versions - Latest release: 7 months ago - 2.53 thousand downloads total - 54 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 7 months ago - 6 dependent packages - 42.6 thousand downloads total - 205 stars on GitHub - 1 maintainer
splatter 1.26.0
Simple Simulation of Single-cell RNA Sequencing Data3 versions - Latest release: 7 months ago - 6 dependent packages - 42.6 thousand downloads total - 205 stars on GitHub - 1 maintainer
scruff 1.20.0
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)3 versions - Latest release: 6 months ago - 7.81 thousand downloads total - 8 stars on GitHub - 1 maintainer
compartmap 1.20.0
Higher-order chromatin domain inference in single cells from scRNA-seq and scATAC-seq3 versions - Latest release: 6 months ago - 6.35 thousand downloads total - 11 stars on GitHub - 1 maintainer
BASiCS 2.14.0
Bayesian Analysis of Single-Cell Sequencing data3 versions - Latest release: 6 months ago - 2 dependent packages - 17.3 thousand downloads total - 83 stars on GitHub - 1 maintainer
MuData 1.6.0
Serialization for MultiAssayExperiment Objects3 versions - Latest release: 7 months ago - 2.13 thousand downloads total - 4 stars on GitHub - 1 maintainer
NewWave 1.12.0
Negative binomial model for scRNA-seq3 versions - Latest release: 7 months ago - 5.06 thousand downloads total - 4 stars on GitHub - 1 maintainer
scBubbletree 1.6.0
Quantitative visual exploration of scRNA-seq data3 versions - Latest release: 23 days ago - 1.59 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 8.2% on bioconductor.org
4 versions - Latest release: 28 days ago - 6 dependent packages - 43.4 thousand downloads total - 132 stars on GitHub - 1 maintainer
zellkonverter 1.14.0
Conversion Between scRNA-seq Objects4 versions - Latest release: 28 days ago - 6 dependent packages - 43.4 thousand downloads total - 132 stars on GitHub - 1 maintainer
TREG 1.8.0
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data3 versions - Latest release: about 1 month ago - 1.75 thousand downloads total - 4 stars on GitHub - 1 maintainer
BgeeDB 2.30.0
Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities...3 versions - Latest release: about 1 month ago - 2 dependent packages - 17.4 thousand downloads total - 13 stars on GitHub - 4 maintainers
Related Keywords
Software
12
SingleCell
9
RNASeq
8
GeneExpression
7
Sequencing
7
Transcriptomics
6
bioconductor
4
single-cell
4
bioinformatics
3
ImmunoOncology
3
Visualization
3
r
3
DataImport
3
gene-expression
2
rna-seq
2
multimodal-omics
1
Coverage
1
Regression
1
batch-effects
1
multi-omics
1
BatchEffect
1
biology
1
dimensionality-reduction
1
negative-binomial
1
Clustering
1
big-data
1
bigdata
1
scrna-seq-analysis
1
transcriptomics
1
visual
1
visual-exploration
1
visualization
1
DataRepresentation
1
conversion
1
Transcription
1
deconvolution
1
rnascope
1
rstats
1
smfish
1
snrna-seq
1
treg
1
GO
1
GeneSetEnrichment
1
Microarray
1
enrichment-analysis
1
gene-level
1
intergenic-regions
1
present-absent-calls
1
rna-seq-libraries
1
ExomeSeq
1
clonal-clustering
1
gibbs-sampling
1
somatic-mutations
1
simulation
1
Alignment
1
Preprocessing
1
QualityControl
1
Technology
1
WorkflowStep
1
umi
1
ATACSeq
1
Epigenetics
1
Genetics
1
scatac-seq
1
Bayesian
1
CellBiology
1
DifferentialExpression
1
Normalization
1
bayesian
1
bioconductor-package
1
rcpp
1
rcpparmadillo
1
anndata
1
mudata
1