Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "cell-segmentation" keyword
Top 2.4% on pypi.org
31 versions - Latest release: about 1 month ago - 25 dependent packages - 35 dependent repositories - 12 thousand downloads last month - 739 stars on GitHub - 2 maintainers
stardist 0.9.1
StarDist - Object Detection with Star-convex Shapes31 versions - Latest release: about 1 month ago - 25 dependent packages - 35 dependent repositories - 12 thousand downloads last month - 739 stars on GitHub - 2 maintainers
Top 7.7% on pypi.org
25 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 1.2 thousand downloads last month - 330 stars on GitHub - 2 maintainers
tiatoolbox 1.5.1
Computational pathology toolbox developed by TIA Centre.25 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 1.2 thousand downloads last month - 330 stars on GitHub - 2 maintainers
epitools 0.0.12
Quantifying 2D cell shape and epithelial tissue dynamics12 versions - Latest release: 10 months ago - 88 downloads last month - 6 stars on GitHub - 1 maintainer
Top 1.8% on pypi.org
78 versions - Latest release: 25 days ago - 43 dependent packages - 58 dependent repositories - 29.3 thousand downloads last month - 1,042 stars on GitHub - 2 maintainers
cellpose 3.0.8
anatomical segmentation algorithm78 versions - Latest release: 25 days ago - 43 dependent packages - 58 dependent repositories - 29.3 thousand downloads last month - 1,042 stars on GitHub - 2 maintainers
yeastvision 0.1.37
Deep learning-enabled image analysis of the full yeast life cycle36 versions - Latest release: 24 days ago - 827 downloads last month - 2 stars on GitHub - 1 maintainer
celldetection 0.4.5
Cell Detection with PyTorch.13 versions - Latest release: 7 months ago - 1 dependent repositories - 226 downloads last month - 110 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
11 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 32 stars on GitHub - 2 maintainers
stardist-napari 2022.12.6
Object Detection with Star-convex Shapes11 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 32 stars on GitHub - 2 maintainers
deepliif 1.1.10
DeepLIIF: Deep-Learning Inferred Multiplex Immunofluorescence for Immunohistochemical Image Quant...9 versions - Latest release: about 1 month ago - 1 dependent repositories - 119 downloads last month - 132 stars on GitHub - 2 maintainers
spateo-release 1.0.2
Spateo: multidimensional spatiotemporal modeling of single-cell spatial transcriptomics3 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 155 downloads last month - 146 stars on GitHub - 1 maintainer
efficientbioai 0.0.6
efficientbioai is a python package for efficient deep learning in bioimaging2 versions - Latest release: about 1 year ago - 18 downloads last month - 1,155 stars on GitHub - 1 maintainer
cellpose-vollseg 0.0.3
modification of cellpose algorithm3 versions - Latest release: over 1 year ago - 1 dependent package - 75 downloads last month - 1,201 stars on GitHub - 1 maintainer
scellseg 0.1.8
a specializable cell segmentation tool1 version - Latest release: about 2 years ago - 1 dependent repositories - 30 downloads last month - 10 stars on GitHub - 1 maintainer
cellseg_models_pytorch 0.1.24
Python library for 2D cell/nuclei instance segmentation models written with PyTorch.24 versions - Latest release: 8 months ago - 250 downloads last month - 60 stars on GitHub - 1 maintainer
seg2link 0.1.3
A napari based 3D segmentation software for electron microscopy images1 version - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 5 stars on GitHub - 1 maintainer
Related Keywords
deep-learning
7
cell-biology
5
segmentation
5
pytorch
3
nuclei-segmentation
3
object-detection
3
python
3
ai
2
cell
2
tissue-segmentation
2
image-segmentation
2
machine-learning
2
digital-pathology
2
slide-seq
1
MERFISH
1
seqFish
1
Visium
1
DBiT-seq
1
HDST-seq
1
osmFISH
1
stereo-seq
1
spatial-transcriptomics
1
pathology-image
1
pathology-gan
1
pathology
1
multitask-learning
1
multiplex
1
immunohistochemistry
1
immunohistochemical-images
1
datasets
1
cloud-native-applications
1
ai-ready
1
Classification
1
Segmentation
1
em-images
1
brain-connectivity
1
timm
1
stardist
1
panoptic-segmentation
1
omnipose
1
ml
1
microscopy
1
hovernet
1
cellpose
1
accelerate
1
pytorch-lightning
1
nuclei segmentation
1
cell segmentation
1
open-source
1
microscopy-images
1
fine-tuning
1
microscopy model compression
1
quantization
1
deep learning
1
3d-reconstruction
1
spatiotemporal
1
IHC
1
detection
1
object-tracking
1
data-visualization
1
image-projections
1
epithelial-tissue
1
cell-shape
1
topology
1
tissue
1
shape
1
mechanics
1
biology
1
whole-slide-imaging
1
tissue-analysis
1
stain-normalization
1
medical-image-analysis
1
image-analysis
1
histopathology
1
computational-pathology
1
cell-classification
1
tiatoolbox
1
bioimage-analysis
1
DeepLIIF
1
napari-plugin
1
napari
1
semantic-segmentation
1
mask-rcnn
1
instance-segmentation
1
fpn
1
celldetection
1
cell-detection
1
cell-counting
1
juelich
1
julich
1
fzj
1
unet
1
learning
1
deep
1
network
1
proposal
1
contour
1
cpn
1
object
1