Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "napari" keyword
napari-seedseg 0.0.2
A simple plugin for segmentation2 versions - Latest release: about 1 year ago - 7 downloads last month - 0 stars on GitHub - 1 maintainer
elastix-napari 0.2.1
A toolbox for rigid and nonrigid registration of images.11 versions - Latest release: 12 months ago - 1 dependent repositories - 138 downloads last month - 30 stars on GitHub - 2 maintainers
Top 1.7% on pypi.org
166 versions - Latest release: 4 months ago - 310 dependent packages - 170 dependent repositories - 42 thousand downloads last month - 2,045 stars on GitHub - 5 maintainers
napari 0.4.19 💰
n-dimensional array viewer in Python166 versions - Latest release: 4 months ago - 310 dependent packages - 170 dependent repositories - 42 thousand downloads last month - 2,045 stars on GitHub - 5 maintainers
Top 9.4% on pypi.org
12 versions - Latest release: 4 months ago - 9 dependent packages - 1 dependent repositories - 2.38 thousand downloads last month - 39 stars on GitHub - 1 maintainer
napari-matplotlib 2.0.1 💰
A plugin to use Matplotlib with napari12 versions - Latest release: 4 months ago - 9 dependent packages - 1 dependent repositories - 2.38 thousand downloads last month - 39 stars on GitHub - 1 maintainer
napari-itk-io 0.3.0
File IO with itk for napari4 versions - Latest release: about 1 year ago - 3 dependent packages - 2 dependent repositories - 83 downloads last month - 7 stars on GitHub - 1 maintainer
itk_napari_conversion 0.3.1
Convert between itk and napari data structures.4 versions - Latest release: about 3 years ago - 3 dependent repositories - 126 downloads last month - 3 stars on GitHub - 2 maintainers
napari-classification 0.0.0
napari classification plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
impy-array 2.4.1
Speed up coding/extending image analysis in Python.29 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 899 downloads last month - 29 stars on GitHub - 1 maintainer
napari-result-stack 0.0.1
Widgets and type annotations for storing function results of any types1 version - Latest release: over 1 year ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
napari-denoising 0.0.0
napari denoising plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
napari-allencell-segmenter 2.1.12
A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science26 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 140 downloads last month - 17 stars on GitHub - 1 maintainer
napari-registration 0.0.0
napari registration plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
brainglobe-segmentation 1.2.3
Segmentation of anatomical structures in a common coordinate space8 versions - Latest release: 3 months ago - 2 dependent packages - 1.02 thousand downloads last month - 28 stars on GitHub - 3 maintainers
napari-multitask 0.0.2
Multitasking in napari2 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 2 stars on GitHub - 1 maintainer
partsegdata 0.10.0
PartSeg data files3 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 776 downloads last month - 27 stars on GitHub - 1 maintainer
partseg 0.15.2
PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analy...72 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 1.6 thousand downloads last month - 27 stars on GitHub - 1 maintainer
napari-deepmeta 2.1
Mice lungs and metastases segmentation tool.9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 53 downloads last month - 2 stars on GitHub - 1 maintainer
napari-tracking 0.0.0
napari tracking plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
Top 8.8% on pypi.org
11 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 32 stars on GitHub - 2 maintainers
stardist-napari 2022.12.6
Object Detection with Star-convex Shapes11 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 32 stars on GitHub - 2 maintainers
napatrackmater 5.2.3 💰
Import Trackmate XML files for Track Visualization and analysis in Napari.284 versions - Latest release: 16 days ago - 2 dependent packages - 1 dependent repositories - 2.71 thousand downloads last month - 16 stars on GitHub - 1 maintainer
napari-arboretum 0.1.2
Track graph and lineage tree visualization with napari6 versions - Latest release: 12 months ago - 1 dependent repositories - 43 downloads last month - 42 stars on GitHub - 1 maintainer
napari-hippo 0.2.0
A fat and clumsy collection of hyperspectral tools2 versions - Latest release: 18 days ago - 125 downloads last month - 3 stars on GitHub - 1 maintainer
napari-text-layer 0.1.2
Text layer for bio-image annotation.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 6 stars on GitHub - 1 maintainer
napari-spatialdata 0.4.1
Interactive visualization of spatial omics data with napari14 versions - Latest release: 2 months ago - 1 dependent package - 756 downloads last month - 33 stars on GitHub - 1 maintainer
cylindra 1.0.0b1
Spectral analysis, simulation and subtomogram averaging of heterogenic cylindrical structures2 versions - Latest release: 26 days ago - 3.41 thousand downloads last month - 7 stars on GitHub - 1 maintainer
cellfinder-napari 1.0.2
Efficient cell detection in large images39 versions - Latest release: 5 months ago - 3 dependent packages - 1 dependent repositories - 293 downloads last month - 24 stars on GitHub - 1 maintainer
peepingtom 0.2.0
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 24 downloads last month - 20 stars on GitHub - 1 maintainer
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.1 version - Latest release: almost 2 years ago - 25 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
6 versions - Latest release: almost 2 years ago - 1 dependent package - 4 dependent repositories - 420 downloads last month - 42 stars on GitHub - 1 maintainer
cellpose-napari 0.1.5
a generalist algorithm for anatomical segmentation6 versions - Latest release: almost 2 years ago - 1 dependent package - 4 dependent repositories - 420 downloads last month - 42 stars on GitHub - 1 maintainer
napari-pyclesperanto-assistant 0.22.1
GPU-accelerated image processing in napari using OpenCL68 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 768 downloads last month - 31 stars on GitHub - 1 maintainer
napari-segmentation 0.0.1
napari segmentation plugin.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 13 downloads last month - 1 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
15 versions - Latest release: about 2 months ago - 4 dependent packages - 3 dependent repositories - 755 downloads last month - 71 stars on GitHub - 5 maintainers
napari-animation 0.0.8
A plugin for making animations in napari15 versions - Latest release: about 2 months ago - 4 dependent packages - 3 dependent repositories - 755 downloads last month - 71 stars on GitHub - 5 maintainers
napari-bleach-correct 0.0.1
A napari plugin to correct time-lapse images for photobleaching.1 version - Latest release: over 1 year ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
blik 0.6.13
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.28 versions - Latest release: about 2 months ago - 1 dependent repositories - 437 downloads last month - 20 stars on GitHub - 1 maintainer
brainreg-segment 0.2.20
Manual segmentation of 3D brain structures in a common anatomical space35 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 360 downloads last month - 28 stars on GitHub - 3 maintainers
imgreg2d 0.0.0.2
easy 2D image registration in python2 versions - Latest release: about 4 years ago - 1 dependent repositories - 7 downloads last month - 14 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
25 versions - Latest release: 2 months ago - 18 dependent packages - 27 dependent repositories - 52.9 thousand downloads last month - 9 stars on GitHub - 5 maintainers
npe2 0.7.5
napari plugin engine v225 versions - Latest release: 2 months ago - 18 dependent packages - 27 dependent repositories - 52.9 thousand downloads last month - 9 stars on GitHub - 5 maintainers
napari-aicsimageio 0.7.2
AICSImageIO bindings for napari19 versions - Latest release: almost 2 years ago - 7 dependent packages - 1 dependent repositories - 497 downloads last month - 33 stars on GitHub - 1 maintainer
napari-3dtimereg 0.0.5 💰
Registration of 3D movies applied to all channels4 versions - Latest release: 27 days ago - 161 downloads last month - 2,045 stars on GitHub - 1 maintainer
napari-caphid 0.0.1
Annotation of aphid and update table1 version - Latest release: 10 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
multireg 0.0.15 💰
Registration of 3D multiplex images with one common chanel12 versions - Latest release: 4 months ago - 137 downloads last month - 2,045 stars on GitHub - 1 maintainer
napari-imagej 0.1.0
ImageJ functionality from napari1 version - Latest release: about 1 year ago - 45 downloads last month - 25 stars on GitHub - 4 maintainers
napari-tiledb-bioimg 0.0.1
Support reading and writing TileDB-Bioimaging image arrays within Napari1 version - Latest release: about 1 year ago - 21 downloads last month - 7 stars on GitHub - 3 maintainers
napari-hough-circle-detector 0.0.5
An interactive Hough transform for napari.5 versions - Latest release: 9 months ago - 48 downloads last month - 1 maintainer
napari-macrokit 0.0.1
Executable script generation for napari plugins1 version - Latest release: over 1 year ago - 1 dependent package - 35 downloads last month - 3 stars on GitHub - 1 maintainer
em-deepfinder 1.1.0
Deep Finder is an original deep learning approach to localize macromolecules in cryo electron tom...1 version - Latest release: almost 2 years ago - 63 downloads last month - 4 stars on GitHub - 1 maintainer
napari-lattice 0.2.7
Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane Microscopy data.13 versions - Latest release: about 1 year ago - 127 downloads last month - 11 stars on GitHub - 1 maintainer
napari-filaments 0.3.0
A napari plugin for filament analysis4 versions - Latest release: 12 months ago - 52 downloads last month - 9 stars on GitHub - 1 maintainer
napari-mm3 0.0.16
a plugin for mother machine image analysis12 versions - Latest release: 27 days ago - 1 dependent repositories - 95 downloads last month - 6 stars on GitHub - 2 maintainers
napari-omero 0.2.1
napari/OMERO interoperability7 versions - Latest release: about 1 year ago - 1 dependent repositories - 88 downloads last month - 32 stars on GitHub - 1 maintainer
napari-micromanager 0.1.0
Micro-Manager GUI interface in napari.7 versions - Latest release: 3 months ago - 1 dependent repositories - 93 downloads last month - 57 stars on GitHub - 1 maintainer
napari-labelling-assistant 0.0.5
A lightweight plugin for visualizing labelling statistics.5 versions - Latest release: over 2 years ago - 1 dependent repositories - 63 downloads last month - 1 stars on GitHub - 1 maintainer
napari-io 0.0.0
napari io plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
napari-detection 0.0.0
napari detection plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 1 maintainer
cycifaap 5.7.7
Cyclic ImmunoFluoresence (cycIF) Automatic Analysis Pipeline23 versions - Latest release: 11 months ago - 1 dependent repositories - 92 downloads last month - 1 maintainer
brainreg-napari 0.1.4
Multi-atlas whole-brain microscopy registration12 versions - Latest release: 5 months ago - 2 dependent packages - 140 downloads last month - 13 stars on GitHub - 1 maintainer
misic 1.1.5 💰
Microbe segmentation in dense colonies12 versions - Latest release: over 2 years ago - 1 dependent repositories - 106 downloads last month - 2,045 stars on GitHub - 1 maintainer
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.2% on pypi.org
49 versions - Latest release: about 1 year ago - 16 dependent packages - 8 dependent repositories - 2.32 thousand downloads last month - 46 stars on GitHub - 1 maintainer
napari-skimage-regionprops 0.10.1
A regionprops table widget plugin for napari49 versions - Latest release: about 1 year ago - 16 dependent packages - 8 dependent repositories - 2.32 thousand downloads last month - 46 stars on GitHub - 1 maintainer
napari-time-series-plotter 0.0.6
A Plugin for napari to visualize pixel values over the first dimension (time -> t+3D, t+2D) as gr...6 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 45 downloads last month - 10 stars on GitHub - 1 maintainer
napari-sc3d-viewer 1.1.0
A plugin to visualize 3D single cell omics5 versions - Latest release: 10 months ago - 69 downloads last month - 18 stars on GitHub - 1 maintainer
napari-deepfinder 0.0.1
A napari plugin for the DeepFinder library which includes display, annotation, target generation,...1 version - Latest release: almost 2 years ago - 31 downloads last month - 4 stars on GitHub - 1 maintainer
cryoet-deepfinder 1.1.2
DeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomo...5 versions - Latest release: almost 2 years ago - 31 downloads last month - 4 stars on GitHub - 1 maintainer
Related Keywords
napari-plugin
29
python
22
visualization
8
napari-plugins
7
segmentation
7
microscopy
7
numpy
6
cryo-et
5
deep-learning
5
deepfinder
3
neuroscience
3
cellfinder
3
registration
3
image-processing
3
napari-visualization
2
image-segmentation
2
object-detection
2
bioimaging
2
bioimage-analysis
2
neuroanatomy
2
tensorflow
2
brainreg
2
teamtomo
2
image-analysis
2
scientific-computing
2
open-source
2
medical-imaging
2
itk
2
io
2
plotting
2
spatial-transcriptomics
1
plugin
1
labelling
1
assistive-technology
1
remote
1
omero
1
multi-processing
1
micro-manager
1
microscope
1
OMERO.CLI
1
unet-image-segmentation
1
otsu-thresholding
1
biomedical-image-processing
1
zeiss
1
oblique-plane
1
lightsheet
1
lattice
1
image-analysis-and-processing
1
deskewing
1
deconvolution
1
hough
1
tiledb
1
fiji
1
imagej2
1
3d
1
timeseries-analysis
1
timeseries
1
time-series-analysis
1
time-series
1
qt
1
python3
1
skimage
1
microscopy-data
1
automation
1
brain
1
atlases
1
anatomy
1
cell type
1
cell analysis
1
cell
1
cells
1
nucleus
1
nuclei
1
restore
1
features extraction
1
features
1
immunofluorescence
1
cycif
1
cyclic Immunofluorescence
1
detection
1
python-3
1
spatial-omics
1
spatial-analysis
1
hyperspectral-imaging
1
hyperspectral
1
gui-application
1
cell-tracking
1
btrack
1
xml-files
1
trackmate
1
nuclei-segmentation
1
cell-segmentation
1
tracking
1
mri-images
1
lungs-segmentation
1
deeplearning
1
cookiecutter-napari-plugin
1
GUI
1
napari-allencell-segmenter
1
denoising
1