Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "electron-microscopy" keyword
instamatic 2.0.1
Python program for automated electron diffraction data collection14 versions - Latest release: about 1 month ago - 1 dependent repositories - 102 downloads last month - 51 stars on GitHub - 1 maintainer
scipion-em-emantomo 3.3.1
Plugin to use EMAN2 tomography programs within the Scipion framework14 versions - Latest release: 2 months ago - 1 dependent repositories - 133 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-gctf 3.1.3
Plugin to use Gctf program within the Scipion framework21 versions - Latest release: 7 months ago - 1 dependent repositories - 158 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-gautomatch 3.0.18
Plugin to use Gautomatch program within the Scipion framework19 versions - Latest release: 7 months ago - 1 dependent repositories - 102 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-sidesplitter 3.0.12
Plugin to use SIDESPLITTER program within the Scipion framework13 versions - Latest release: 7 months ago - 1 dependent repositories - 81 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryoassess 3.1.1
Plugin to use cryoassess within the Scipion framework10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 78 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-susantomo 3.0b4
Plugin to use SUSAN within the Scipion framework4 versions - Latest release: 4 months ago - 39 downloads last month - 2 stars on GitHub - 2 maintainers
scipion-em-imagic 3.0.13
Plugin to use IMAGIC programs within the Scipion framework15 versions - Latest release: 7 months ago - 1 dependent repositories - 66 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-fsc3d 3.2.1
Plugin to use 3DFSC within the Scipion framework10 versions - Latest release: 7 months ago - 1 dependent repositories - 68 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.4% on pypi.org
86 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 477 downloads last month - 250 stars on GitHub - 2 maintainers
pycroscopy 0.63.2
Python library for scientific analysis of microscopy data86 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 477 downloads last month - 250 stars on GitHub - 2 maintainers
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.9 versions - Latest release: 3 months ago - 29 downloads last month - 10 stars on GitHub - 1 maintainer
stemtool 2024.5.6
A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with...15 versions - Latest release: 27 days ago - 1 dependent repositories - 219 downloads last month - 16 stars on GitHub - 1 maintainer
scipion-em-motioncorr 3.16.1
Plugin to use motioncor programs within the Scipion framework33 versions - Latest release: 3 months ago - 1 dependent repositories - 189 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-locscale 3.0.5
Plugin to use Locscale program within the Scipion framework14 versions - Latest release: over 1 year ago - 1 dependent repositories - 91 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-nysbc 1.0.3
Plugin to use NYSBC programs within the Scipion framework4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 22 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-imod 3.4.1
Plugin to use some of the Tomography tools from IMOD in Scipion27 versions - Latest release: 3 months ago - 3 dependent packages - 2 dependent repositories - 183 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-sphire 3.1.14
Plugin to use Sphire programs within the Scipion framework36 versions - Latest release: 4 months ago - 1 dependent repositories - 141 downloads last month - 0 stars on GitHub - 2 maintainers
elektronn3 0.1.1
Utilities for 3D CNNs in PyTorch2 versions - Latest release: 12 months ago - 1 dependent package - 2 dependent repositories - 88 downloads last month - 161 stars on GitHub - 1 maintainer
rosettasciio 0.4
Reading and writing scientific file formats4 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 13.9 thousand downloads last month - 44 stars on GitHub - 1 maintainer
cryojax 0.2.3
Cryo-EM image simulation and analysis powered by JAX7 versions - Latest release: about 2 months ago - 261 downloads last month - 26 stars on GitHub - 1 maintainer
pymontecarlo-casino2 1.1.0
Python interface for Monte Carlo simulation program Casino 23 versions - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 20 stars on GitHub - 1 maintainer
emtools 0.0.11
Utilities for CryoEM data manipulation10 versions - Latest release: 3 months ago - 1 dependent package - 117 downloads last month - 5 stars on GitHub - 1 maintainer
scipion-em-warp 3.2.3
Plugin to use Warp within the Scipion framework9 versions - Latest release: about 1 month ago - 132 downloads last month - 0 stars on GitHub - 2 maintainers
pymontecarlo-gui 1.1.0
Python interface for Monte Carlo simulation programs2 versions - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 20 stars on GitHub - 1 maintainer
scipion-em-cryosparc2 4.1.0
Plugin to use cryoSPARC2 programs within the Scipion framework83 versions - Latest release: about 1 month ago - 1 dependent repositories - 415 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-aretomo 3.9.0
Plugin to use AreTomo program within the Scipion framework37 versions - Latest release: 3 months ago - 1 dependent repositories - 230 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-tomo 3.6.1
Plugin to use electron tomography software within the Scipion framework33 versions - Latest release: 2 months ago - 14 dependent packages - 13 dependent repositories - 350 downloads last month - 6 stars on GitHub - 1 maintainer
pyserialem 0.3.2
Python module to read/write SerialEM .nav files.7 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 96 downloads last month - 1 stars on GitHub - 1 maintainer
pymontecarlo-penepma 1.0.0
Interface of Monte Carlo simulation program PENEPMA with pyMonteCarlo1 version - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 20 stars on GitHub - 1 maintainer
empanada-napari 1.1.0
Napari plugin of algorithms for Panoptic Segmentation of organelles in EM10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 182 downloads last month - 15 stars on GitHub - 2 maintainers
scipion-em-bsoft 3.0.6
Plugin to use Cryoef program within the Scipion framework11 versions - Latest release: over 2 years ago - 1 dependent repositories - 80 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-cryomethods 1.1.1
Plugin to use Cryomethods program within the Scipion framework2 versions - Latest release: over 4 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
emcore 0.0.5
Python module to access functionality in the emcore library2 versions - Latest release: about 4 years ago - 1 dependent repositories - 19 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-simple 1.0.3
Plugin to use Simple programs within the Scipion framework4 versions - Latest release: about 5 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-bamfordlab 3.0.0
Plugin to use Bamfordlab programs within the Scipion framework7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
emtable 0.0.14
Simple module to deal with EM tabular data (aka metadata)7 versions - Latest release: almost 2 years ago - 10 dependent packages - 17 dependent repositories - 763 downloads last month - 4 stars on GitHub - 2 maintainers
please 0.9.8
Software for the analysis of Low Energy Electron Microscopy data22 versions - Latest release: over 7 years ago - 10 dependent repositories - 223 downloads last month - 16 stars on GitHub - 1 maintainer
scipion-em-eman2 3.6.1
Plugin to use EMAN programs within the Scipion framework21 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 239 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-novactf 3.1.2
Plugin to use NovaCTF in Scipion9 versions - Latest release: 7 months ago - 1 dependent repositories - 116 downloads last month - 1 stars on GitHub - 1 maintainer
imagedataextractor 2.0.4
imagedataextractor is a Python library for electron microscopy image quantification.6 versions - Latest release: about 3 years ago - 1 dependent repositories - 54 downloads last month - 12 stars on GitHub - 2 maintainers
axondeepseg 3.2.0
Python tool for automatic axon and myelin segmentation14 versions - Latest release: over 3 years ago - 55 downloads last month - 112 stars on GitHub - 3 maintainers
traceon 0.5.0
Solver and tracer for electrostatic problems9 versions - Latest release: 3 months ago - 198 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-relion 4.0.20
Plugin to use Relion programs within the Scipion framework63 versions - Latest release: 3 months ago - 4 dependent packages - 6 dependent repositories - 672 downloads last month - 3 stars on GitHub - 3 maintainers
scipion-em-xlmtools 1.0.0
Plugin to use xlmtools-Tools programs within the Scipion framework1 version - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-cryodrgn 3.12.2
Plugin to use cryoDRGN within the Scipion framework26 versions - Latest release: 3 months ago - 1 dependent repositories - 180 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-atsas 3.0.2
Plugin to use ATSAS programs within the Scipion framework11 versions - Latest release: over 3 years ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-emready 3.0
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning1 version - Latest release: 12 months ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.6% on pypi.org
30 versions - Latest release: 17 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
libertem 0.14.0
Open pixelated STEM framework30 versions - Latest release: 17 days ago - 2 dependent packages - 3 dependent repositories - 992 downloads last month - 106 stars on GitHub - 3 maintainers
libertem-blobfinder 0.6.1
LiberTEM correlation and refinement library5 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 329 downloads last month - 5 stars on GitHub - 2 maintainers
atomai 0.7.8
Deep and machine learning for atom-resolved data29 versions - Latest release: 8 months ago - 1 dependent repositories - 530 downloads last month - 164 stars on GitHub - 1 maintainer
particlespy 0.6.2
A package to perform particle segmentation and analysis15 versions - Latest release: about 1 year ago - 1 dependent repositories - 220 downloads last month - 19 stars on GitHub - 1 maintainer
scipion-em-cistem 3.9.1
Plugin to use cisTEM programs within the Scipion framework24 versions - Latest release: 18 days ago - 1 dependent repositories - 324 downloads last month - 1 stars on GitHub - 2 maintainers
Top 8.9% on pypi.org
52 versions - Latest release: 19 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-pyworkflow 3.6.0
Simple workflow platform used in scientific applications, initially developed within the Scipion ...52 versions - Latest release: 19 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
empanada-dl 0.1.7
Algorithms for Panoptic Segmentation of organelles in EM7 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 208 downloads last month - 11 stars on GitHub - 2 maintainers
Top 4.0% on pypi.org
326 versions - Latest release: 22 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
cloud-volume 8.33.0
A serverless client for reading and writing Neuroglancer Precomputed volumes both locally and on ...326 versions - Latest release: 22 days ago - 19 dependent packages - 45 dependent repositories - 4.61 thousand downloads last month - 121 stars on GitHub - 1 maintainer
scipion-em-embuild 1.0.4
EMBuild: Model building of protein complexes from intermediate-resolution cryo-EM maps with deep ...5 versions - Latest release: about 1 year ago - 4 downloads last month - 1 maintainer
starparser 1.57
Manipulate and mine Relion star files.38 versions - Latest release: 22 days ago - 1 dependent repositories - 282 downloads last month - 17 stars on GitHub - 1 maintainer
sofima 0.1
Scalable Optical Flow-based Image Montaging and Alignment1 version - Latest release: about 2 years ago - 1 dependent repositories - 9 downloads last month - 47 stars on GitHub - 1 maintainer
scipion-em-spoc 1.0.6
Plugin to use SPOC programs within the Scipion framework7 versions - Latest release: about 2 years ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-spider 3.1.7
Plugin to use Spider programs within the Scipion framework18 versions - Latest release: 7 months ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-sll 0.0.1
Scipion plugin for CryoEM tools developed at SciLifeLab1 version - Latest release: almost 5 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
scipion-em-resmap 3.0.3
Plugin to use ResMap program within the Scipion framework12 versions - Latest release: almost 3 years ago - 1 dependent repositories - 45 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-cryoef 3.0.15
Plugin to use Cryoef program within the Scipion framework16 versions - Latest release: 7 months ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 3 maintainers
Top 7.8% on pypi.org
40 versions - Latest release: about 1 month ago - 1 dependent package - 3 dependent repositories - 766 downloads last month - 122 stars on GitHub - 1 maintainer
scikit-ued 2.1.15 💰
Collection of algorithms and functions for ultrafast electron scattering40 versions - Latest release: about 1 month ago - 1 dependent package - 3 dependent repositories - 766 downloads last month - 122 stars on GitHub - 1 maintainer
kltpicker 1.2.8
KLT picker11 versions - Latest release: over 3 years ago - 1 dependent repositories - 15 downloads last month - 6 stars on GitHub - 2 maintainers
focustools 0.2.3
Python utilities supporting the FOCUS package and cryo-EM data processing in general.9 versions - Latest release: over 4 years ago - 1 dependent repositories - 83 downloads last month - 5 stars on GitHub - 1 maintainer
stemia 0.7.5
A personal collection of (sometimes...) useful scripts and tools for cryoem/cryoet.28 versions - Latest release: 5 months ago - 1 dependent repositories - 196 downloads last month - 10 stars on GitHub - 1 maintainer
scipion-em-dynamo 3.1.21
Plugin to use DYNAMO within the Scipion framework22 versions - Latest release: 7 months ago - 1 dependent repositories - 142 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-tomotwin 3.0.1
Plugin to use TomoTwin within the Scipion framework10 versions - Latest release: about 1 year ago - 39 downloads last month - 1 stars on GitHub - 2 maintainers
Related Keywords
image-processing
45
cryo-em
42
structural-biology
41
scipion
37
scipion-3.0
33
spa
21
tomo
13
microscopy
12
python
6
deep-learning
5
subtomogram-averaging
4
electron
4
x-ray-spectroscopy
3
biomedical-image-processing
3
machine-learning
3
cryo-tomography
3
x-ray
3
semantic-segmentation
3
pytorch
3
segmentation
3
connectomics
3
microanalysis
3
monte-carlo-simulation
3
msa
2
data-processing
2
atom
2
convolutional-neural-networks
2
numpy
2
materials-science
2
raman
2
hyperspectral
2
science
2
scanning-probe-microscopy
2
imaging
2
spectroscopy
2
signal-processing
2
panoptic-segmentation
2
scipion-2.0
2
python3
2
electron microscopy
2
instance-segmentation
2
3d
2
2d
2
cryo-EM
2
jax
2
tomography
2
STEM
2
TEM
2
meshes
1
electromagnetic
1
electrostatic
1
BEM
1
boundary element method
1
histology
1
myelin
1
spinalcord
1
neuropoly
1
electron-crystallography
1
image
1
multi-dimensional
1
scientific-formats
1
equinox
1
cryosparc
1
serialem
1
navigator
1
mitochondria
1
napari-plugin
1
cryomethods
1
LEEM
1
LEED
1
Surface science
1
Image Analysis
1
Microscopy
1
I(V) spectra
1
Material Science
1
leed
1
leem
1
surface-science
1
novactf
1
optical-character-recognition
1
particle-segmentation
1
quantitative-analysis
1
axon
1
skeleton
1
skeletons
1
big-data
1
chunked-image
1
cloud
1
large-image
1
matrix
1
microscopy-images
1
serverless
1
tensor
1
embuild
1
relion
1
4d
1
alignment-algorithm
1
stitching-algorithm
1
ultrafast
1
scattering
1