Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "scipion" keyword
scipion-em-atomstructutils 3.0.3
A Scipion plugin to manipulate atomic structure files (PDB/MMCIF)8 versions - Latest release: over 3 years ago - 1 dependent repositories - 94 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-reliontomo 3.4.0
Plugin to use Relion programs for tomography within the Scipion framework15 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 157 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-novactf 3.1.2
Plugin to use NovaCTF in Scipion10 versions - Latest release: 7 months ago - 1 dependent repositories - 88 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-deepfinder 3.1.0
Deepfinder plugin for scipion.2 versions - Latest release: 6 months ago - 1 dependent repositories - 65 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-tomoviz 3.1.4
Tools for 3D visualization and manipulation of tomography data5 versions - Latest release: 6 months ago - 2 dependent packages - 2 dependent repositories - 93 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-cistem 3.9.1
Plugin to use cisTEM programs within the Scipion framework24 versions - Latest release: 26 days ago - 1 dependent repositories - 302 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-kiharalab 1.0.1
Scipion plugin in order to use ther kiharalab software6 versions - Latest release: 12 months ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-motioncorr 3.16.1
Plugin to use motioncor programs within the Scipion framework33 versions - Latest release: 4 months ago - 1 dependent repositories - 256 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-tomo3d 3.1.2
tomo3d and other software at https://sites.google.com/site/3demimageprocessing/Home ready to use ...3 versions - Latest release: 7 months ago - 1 dependent repositories - 54 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-imod 3.4.1
Plugin to use some of the Tomography tools from IMOD in Scipion27 versions - Latest release: 3 months ago - 3 dependent packages - 2 dependent repositories - 171 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-chimera 3.3.6
Plugin to use chimera programs within the Scipion framework17 versions - Latest release: 11 months ago - 1 dependent package - 3 dependent repositories - 166 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-emready 3.0
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning2 versions - Latest release: 12 months ago - 25 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-prody 3.3.0
Scipion plugin for ProDy, the Bahar lab Python Package for Protein Dynamics Analysis11 versions - Latest release: 10 months ago - 1 dependent repositories - 55 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-installer 1.0.16
Installs scipion 3 creating a virtual environment for it, for now only for developers.43 versions - Latest release: about 1 year ago - 1 dependent repositories - 305 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-appion 3.0.3
Plugin to use Appion Dogpicker within the Scipion framework8 versions - Latest release: almost 4 years ago - 1 dependent repositories - 81 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-relion 4.0.20
Plugin to use Relion programs within the Scipion framework64 versions - Latest release: 3 months ago - 4 dependent packages - 6 dependent repositories - 672 downloads last month - 3 stars on GitHub - 3 maintainers
scipion-em-smartscope 3.0.1
Plugin to manage Smartscope from Scipion3 versions - Latest release: 8 months ago - 13 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-xmippbase 23.11.0.0
Scipion pseudoplugin to deal with the shared xmipp protocols.1 version - Latest release: 4 months ago - 61 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-warp 3.2.3
Plugin to use Warp within the Scipion framework9 versions - Latest release: about 2 months ago - 153 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-tomotwin 3.0.1
Plugin to use TomoTwin within the Scipion framework10 versions - Latest release: about 1 year ago - 94 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-sll 0.0.1
Scipion plugin for CryoEM tools developed at SciLifeLab1 version - Latest release: almost 5 years ago - 1 dependent repositories - 8 downloads last month - 1 maintainer
scipion-em-embuild 1.0.4
EMBuild: Model building of protein complexes from intermediate-resolution cryo-EM maps with deep ...5 versions - Latest release: about 1 year ago - 4 downloads last month - 1 maintainer
scipion-em-ccp4 3.2.0
CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher25 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 48 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-facilities 3.0.5
Plugin for Cryo-EM facilities to be used within Scipion framework11 versions - Latest release: 10 months ago - 1 dependent repositories - 145 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
43 versions - Latest release: 27 days ago - 38 dependent packages - 70 dependent repositories - 1.08 thousand downloads last month - 7 stars on GitHub - 2 maintainers
scipion-em 3.7.1
This modules contains classes related with EM43 versions - Latest release: 27 days ago - 38 dependent packages - 70 dependent repositories - 1.08 thousand downloads last month - 7 stars on GitHub - 2 maintainers
scipion-em-cryoef 3.0.15
Plugin to use Cryoef program within the Scipion framework16 versions - Latest release: 7 months ago - 1 dependent repositories - 93 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-spider 3.1.7
Plugin to use Spider programs within the Scipion framework18 versions - Latest release: 7 months ago - 1 dependent repositories - 93 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-topaz 3.0.2
Topaz ready to use in scipion.5 versions - Latest release: about 1 year ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-emantomo 3.3.1
Plugin to use EMAN2 tomography programs within the Scipion framework14 versions - Latest release: 3 months ago - 1 dependent repositories - 133 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-gctf 3.1.3
Plugin to use Gctf program within the Scipion framework21 versions - Latest release: 7 months ago - 1 dependent repositories - 158 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-gautomatch 3.0.18
Plugin to use Gautomatch program within the Scipion framework19 versions - Latest release: 7 months ago - 1 dependent repositories - 102 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-sidesplitter 3.0.12
Plugin to use SIDESPLITTER program within the Scipion framework13 versions - Latest release: 7 months ago - 1 dependent repositories - 81 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryoassess 3.1.1
Plugin to use cryoassess within the Scipion framework10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 78 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-susantomo 3.0b4
Plugin to use SUSAN within the Scipion framework4 versions - Latest release: 4 months ago - 39 downloads last month - 2 stars on GitHub - 2 maintainers
scipion-em-imagic 3.0.13
Plugin to use IMAGIC programs within the Scipion framework15 versions - Latest release: 7 months ago - 1 dependent repositories - 66 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-fsc3d 3.2.1
Plugin to use 3DFSC within the Scipion framework10 versions - Latest release: 7 months ago - 1 dependent repositories - 68 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-bionotes 0.1.2
Scipion 3DBionotes plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-locscale 3.0.5
Plugin to use Locscale program within the Scipion framework14 versions - Latest release: almost 2 years ago - 1 dependent repositories - 91 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-nysbc 1.0.3
Plugin to use NYSBC programs within the Scipion framework4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 22 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-xmipptomo 3.1.2
Scipion plugin to deal with xmipp tomography protocols.16 versions - Latest release: over 1 year ago - 1 dependent repositories - 99 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-sphire 3.1.14
Plugin to use Sphire programs within the Scipion framework36 versions - Latest release: 4 months ago - 1 dependent repositories - 141 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryosparc2 4.1.0
Plugin to use cryoSPARC2 programs within the Scipion framework83 versions - Latest release: about 1 month ago - 1 dependent repositories - 415 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-aretomo 3.9.0
Plugin to use AreTomo program within the Scipion framework37 versions - Latest release: 3 months ago - 1 dependent repositories - 230 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-tomo 3.6.1
Plugin to use electron tomography software within the Scipion framework33 versions - Latest release: 3 months ago - 14 dependent packages - 13 dependent repositories - 350 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-isonet 3.0.1
Scipion plugin isonet.2 versions - Latest release: 4 months ago - 21 downloads last month - 20 stars on GitHub - 1 maintainer
scipion-em-grigoriefflab 1.0.6
Grigoriefflab ready to use in scipion.9 versions - Latest release: almost 5 years ago - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 4 maintainers
xmipp-metadata 1.0.14
Package to handle Xmipp Metadata and image binary data15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 71 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-powerfit 2.0.3
Powerfit ready to use in Scipion.12 versions - Latest release: over 4 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-xmipp 22.7.0
Plugin to use Xmipp programs within the Scipion framework (see https://scipion-em.github.io/docs/).52 versions - Latest release: almost 2 years ago - 3 dependent packages - 2 dependent repositories - 282 downloads last month - 11 stars on GitHub - 1 maintainer
scipion-app 3.3.1
Scipion application. For processing cryo electron microscopy images and hybrid modelling19 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 218 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-bsoft 3.0.6
Plugin to use Cryoef program within the Scipion framework11 versions - Latest release: over 2 years ago - 1 dependent repositories - 80 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-pwperformance 0.0.5
Python module to provide performance analysis tools and storage of the metrics for a further comp...5 versions - Latest release: about 1 year ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-ispyb 1.0.0
ISPyB monitor for scipion2 versions - Latest release: over 5 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-cryomethods 1.1.1
Plugin to use Cryomethods program within the Scipion framework2 versions - Latest release: over 4 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-flexutils 3.1.6
Tools for 3D visualization and manipulation of flexibility data6 versions - Latest release: 2 months ago - 48 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-ed 3.0.1
Base pyworkflow plugin for Electron Diffraction image processing10 versions - Latest release: about 3 years ago - 1 dependent repositories - 31 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-em-simple 1.0.3
Plugin to use Simple programs within the Scipion framework4 versions - Latest release: about 5 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-xmipp2 3.0.1
xmipp2 ready to use in scipion.2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-bamfordlab 3.0.0
Plugin to use Bamfordlab programs within the Scipion framework7 versions - Latest release: about 4 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-eman2 3.6.1
Plugin to use EMAN programs within the Scipion framework21 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 239 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-pyseg 3.1.2
Scipion plugin for PySeg11 versions - Latest release: 7 months ago - 1 dependent repositories - 98 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-esrf 1.0.2
Esrf's ISPyB monitor for Scipion4 versions - Latest release: about 5 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-empiar-depositor 1.0.0a3
A Scipion plugin to make depositions to EMPIAR3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-xlmtools 1.0.0
Plugin to use xlmtools-Tools programs within the Scipion framework1 version - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-cryodrgn 3.12.2
Plugin to use cryoDRGN within the Scipion framework26 versions - Latest release: 3 months ago - 1 dependent repositories - 180 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-atsas 3.0.2
Plugin to use ATSAS programs within the Scipion framework11 versions - Latest release: almost 4 years ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-emxlib 3.0.1
EMX_EXPORT ready to use in scipion.8 versions - Latest release: over 3 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-ucm 1.0
Scipion plugin with map validations1 version - Latest release: over 2 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitLab.com - 1 maintainer
scipion-em-phenix 3.2.1
PHENIX programs in Scipion. Warning: Install PHENIX v. 1-1719 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 101 downloads last month - 3 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
52 versions - Latest release: 27 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-pyworkflow 3.6.0
Simple workflow platform used in scientific applications, initially developed within the Scipion ...52 versions - Latest release: 27 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-em-empiar 3.0.8
A Scipion plugin to make depositions to EMPIAR15 versions - Latest release: over 2 years ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 2 maintainers
scipionn-toolkit 1.0.4 removed
Xmipp neural network utilities for flexibility2 versions - Latest release: about 1 year ago - 1 maintainer
scipion-em-tomosegmemtv 3.1.2
Scipion plugin for softare packages tomosegmemTV and membraneAnnotator.7 versions - Latest release: 5 months ago - 1 dependent repositories - 62 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-spoc 1.0.6
Plugin to use SPOC programs within the Scipion framework7 versions - Latest release: about 2 years ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-resmap 3.0.3
Plugin to use ResMap program within the Scipion framework12 versions - Latest release: almost 3 years ago - 1 dependent repositories - 45 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-ed-dials 3.0.1
Scipion-ED plugin to use programs from DIALS for Electron Diffraction image processing.11 versions - Latest release: about 3 years ago - 1 dependent repositories - 40 downloads last month - 2 maintainers
scipion-em-modelangelo 3.1.1
Scipion plugin for modelangelo.6 versions - Latest release: 2 months ago - 66 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-cryocare 4.1.0
Plugin to use cryoCARE inside scipion.7 versions - Latest release: 2 months ago - 1 dependent repositories - 74 downloads last month - 2 stars on GitHub - 1 maintainer
Related Keywords
scipion-3.0
62
image-processing
42
cryo-em
38
structural-biology
38
electron-microscopy
37
imageprocessing
33
cryoem
30
spa
25
tomo
21
atom
6
scipion-2.0
5
science
4
other
4
subtomogram-averaging
3
cryo-tomography
3
tomography
3
workflows
3
core
3
continuous-heterogeneity
2
empiar
2
cryoet
2
scipion-1.2
2
diffraction
2
electron
2
pyworkflow
2
xmipp
2
cryomethods
1
pdb
1
validation
1
modelling
1
modelangelo
1
fair
1
scientific-computing
1
workflow
1
tomagraphy
1
scipion-3
1
electron-tomography
1
novactf
1
kiharalab
1
EM
1
imod
1
emready
1
prody-2.0
1
screening
1
smartscope
1
Xmipp
1
embuild
1
3DBionotes
1
annotations
1
viewer
1
cryosparc
1
scipion-2
1