Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "electrophysiology" keyword

Top 7.5% on pypi.org
mtscomp 1.0.2
Lossless compression for electrophysiology time-series
5 versions - Latest release: about 3 years ago - 7 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 27 stars on GitHub - 3 maintainers
fenics-beat 0.0.5
Library to run cardiac EP simulations
5 versions - Latest release: 6 days ago - 212 downloads last month - 3 stars on GitHub - 1 maintainer
ephysvibe 0.0.2
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2 versions - Latest release: over 1 year ago - 28 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
phylib 2.5.0
Ephys data analysis for thousands of channels
10 versions - Latest release: 1 day ago - 3 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 10 stars on GitHub - 3 maintainers
clampsuite 0.0.4
Slice electrophysiology analysis package for analyzing mEPSCs, o/eEPSCs and current clamp data.
3 versions - Latest release: about 2 months ago - 18 downloads last month - 2 stars on GitHub - 1 maintainer
musclebeachtools 1.2.1
This package used to analyze neuron data, from basic plotting (ISI histograms, firi...
2 versions - Latest release: about 1 year ago - 23 downloads last month - 4 stars on GitHub - 1 maintainer
unitmatchpy 1.5b0
Description of the package
3 versions - Latest release: 2 days ago - 27 stars on GitHub - 1 maintainer
jagular 0.0.2
Out-of-core pre-processing of big-ish electrophysiology data.
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 3 stars on GitHub - 1 maintainer
simcardems 2023.7.1
Simula Cardiac electromechanics solver
35 versions - Latest release: 7 months ago - 1 dependent repositories - 381 downloads last month - 9 stars on GitHub - 1 maintainer
spyglass-neuro 0.5.2
Neuroscience data analysis framework for reproducible research
23 versions - Latest release: 27 days ago - 1 dependent repositories - 440 downloads last month - 78 stars on GitHub - 3 maintainers
odesolver 0.0.1
General suite of ODE solvers
1 version - Latest release: about 1 year ago - 30 downloads last month - 0 stars on GitHub - 1 maintainer
mef-tools 1.2.3
Tools for easy and efficient handling of Multiscale Eleptrophysiology Format (MEF3).
15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 285 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
spikeinterface 0.100.6
Python toolkit for analysis, visualization, and comparison of spike sorting output
30 versions - Latest release: 19 days ago - 15 dependent packages - 21 dependent repositories - 78.2 thousand downloads last month - 419 stars on GitHub - 2 maintainers
neuraltoolkit 0.3.1
A powerful and fast set of tools for loading data, filtering, processing, working ...
2 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 36 downloads last month - 8 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
neurodsp 2.2.1
Digital signal processing for neural time series.
11 versions - Latest release: over 1 year ago - 3 dependent packages - 11 dependent repositories - 3.84 thousand downloads last month - 275 stars on GitHub - 3 maintainers
nelpy 0.2.1
Neuroelectrophysiology object model and data analysis in Python.
14 versions - Latest release: over 5 years ago - 1 dependent repositories - 85 downloads last month - 45 stars on GitHub - 1 maintainer
neuro-analysis-py 0.0.2
Analysis of neuroelectrophysiology data in Python.
2 versions - Latest release: about 1 year ago - 13 downloads last month - 1 stars on GitHub - 1 maintainer
hsmm-mvpy 0.3.1
DEPRECATED new name under HMP, see https://pypi.org/project/hmp/
66 versions - Latest release: 3 months ago - 558 downloads last month - 30 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
spectral-connectivity 1.1.2
Frequency domain functional and directedconnectivity analysis tools for electrophysiologicaldata
16 versions - Latest release: 10 months ago - 3 dependent packages - 3 dependent repositories - 588 downloads last month - 117 stars on GitHub - 1 maintainer
pyparrm 1.1.0
A Python port of the PARRM algorithm
2 versions - Latest release: 11 months ago - 1 dependent package - 335 downloads last month - 4 stars on GitHub - 1 maintainer
mcspydatatools 0.4.3
Handling data recorded and provided by Multi Channel Systems MCS GmbH systems
6 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 120 downloads last month - 8 stars on GitHub - 3 maintainers
ezephys 0.4.3
Tools for working with electrophysiological data.
4 versions - Latest release: about 2 years ago - 1 dependent repositories - 50 downloads last month - 4 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
fooof 1.1.0
fitting oscillations & one-over f
13 versions - Latest release: 8 months ago - 10 dependent packages - 21 dependent repositories - 8.04 thousand downloads last month - 340 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
elephant 1.1.0
Elephant is a package for analysis of electrophysiology data in Python
26 versions - Latest release: about 1 month ago - 9 dependent packages - 50 dependent repositories - 21 thousand downloads last month - 184 stars on GitHub - 5 maintainers
Top 4.6% on pypi.org
efel 5.6.24
Electrophys Feature Extract Library (eFEL)
369 versions - Latest release: 6 days ago - 9 dependent packages - 27 dependent repositories - 21.3 thousand downloads last month - 63 stars on GitHub - 3 maintainers
Top 3.8% on pypi.org
bluepyopt 1.14.12
Bluebrain Python Optimisation Library (bluepyopt)
367 versions - Latest release: 24 days ago - 8 dependent packages - 17 dependent repositories - 4 thousand downloads last month - 190 stars on GitHub - 3 maintainers
Top 4.2% on pypi.org
spikeextractors 0.9.11
Python module for extracting recorded and spike sorted extracellular data from different file typ...
48 versions - Latest release: over 1 year ago - 3 dependent packages - 23 dependent repositories - 5.41 thousand downloads last month - 117 stars on GitHub - 2 maintainers
hmp 0.3.2
Package for fitting Hidden Multivariate pattern model to time-series
3 versions - Latest release: 3 months ago - 66 downloads last month - 30 stars on GitHub - 1 maintainer
pykilosort 1.4.6
Python port of KiloSort 2
1 version - Latest release: 8 months ago - 1 dependent repositories - 31 downloads last month - 50 stars on GitHub - 1 maintainer
ephyspy 0.0.5
Package to extract summary statistics from electrophysiological data.
3 versions - Latest release: 8 months ago - 14 downloads last month - 3 stars on GitHub - 1 maintainer
specparam 2.0.0rc2
Spectral parameterization.
3 versions - Latest release: about 1 month ago - 250 downloads last month - 340 stars on GitHub - 1 maintainer
forked-ecephys-spike-sorting 0.1.1
Tools for spike-sorting Allen Institute Neuropixels data
2 versions - Latest release: 10 months ago - 1 dependent package - 36 downloads last month - 96 stars on GitHub - 1 maintainer
tissue-detection 0.0.2
General suite of ODE solvers
2 versions - Latest release: 11 months ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
sanpy-ephys 0.2.3
Whole cell current-clamp analysis.
8 versions - Latest release: 6 months ago - 65 downloads last month - 13 stars on GitHub - 1 maintainer
pydapsys 0.2.1
Read recordings made with DAPSYS
6 versions - Latest release: 12 months ago - 35 downloads last month - 0 stars on GitHub - 2 maintainers
spiketools 0.2.0
Module for analyzing spiking data.
5 versions - Latest release: 6 months ago - 1 dependent repositories - 14 downloads last month - 13 stars on GitHub - 1 maintainer
invian 0.0.3
Package to analyze in vivo neural data
2 versions - Latest release: 8 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
kilosort4 0.0.1 removed
A small example package
1 version - Latest release: over 1 year ago - 28 downloads last month - 325 stars on GitHub - 2 maintainers
physion 0.1.1
Vision Physiology Software
4 versions - Latest release: over 1 year ago - 110 downloads last month - 1 stars on GitHub - 1 maintainer
pte-xdf 0.1.0
A package for loading XDF files recorded with TMSi amplifiers.
2 versions - Latest release: over 1 year ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
hs-detection 0.3.0
Spike detection from HS2, used for integration in SpikeInterface
4 versions - Latest release: almost 2 years ago - 15 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
viziphant 0.4.0
Viziphant is a package for the visualization of the analysisresults of electrophysiology data in ...
4 versions - Latest release: 6 months ago - 1 dependent package - 10 dependent repositories - 220 downloads last month - 19 stars on GitHub - 3 maintainers
spikewidgets 0.5.4
Python widgets for spike sorting and electrophysiology
33 versions - Latest release: almost 3 years ago - 1 dependent package - 7 dependent repositories - 97 downloads last month - 6 stars on GitHub - 2 maintainers
spikesorters 0.4.5
Python wrappers for popular spike sorters
25 versions - Latest release: almost 3 years ago - 1 dependent package - 7 dependent repositories - 128 downloads last month - 19 stars on GitHub - 1 maintainer
simplyfire 0.6.1
Customizable electrophysiology analysis software
8 versions - Latest release: 6 months ago - 1 dependent repositories - 66 downloads last month - 1 stars on GitHub - 2 maintainers
shybrid 0.4.3
A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting per...
6 versions - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 19 downloads last month - 9 stars on GitHub - 1 maintainer
pysiology 0.0.9.6 💰
Physiological signal processing in Python
5 versions - Latest release: about 2 years ago - 1 dependent repositories - 116 downloads last month - 56 stars on GitHub - 2 maintainers
pyret 0.6.0
Tools for the analysis of neural electrophysiology data
13 versions - Latest release: almost 6 years ago - 2 dependent repositories - 112 downloads last month - 35 stars on GitHub - 2 maintainers
pydread 0.0a1
Wrapper of C library for .d file reading
7 versions - Latest release: over 2 years ago - 2 dependent repositories - 233 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
pyabf 2.3.8
Python library for reading files in Axon Binary Format (ABF)
63 versions - Latest release: 10 months ago - 7 dependent packages - 19 dependent repositories - 1.73 thousand downloads last month - 95 stars on GitHub - 1 maintainer
phycontrib 1.0.15
Spike sorting and ephys data analysis for 1000 channels and beyond
16 versions - Latest release: over 7 years ago - 2 dependent repositories - 112 downloads last month - 293 stars on GitHub - 2 maintainers
Top 7.3% on pypi.org
phy 1.0.9
Spike sorting and ephys data analysis for 1000 channels and beyond
22 versions - Latest release: over 7 years ago - 2 dependent packages - 9 dependent repositories - 319 downloads last month - 2 maintainers
orange3-mne 1.0.13
Electrophysiological data processing widgets for Orange 3 based on the MNE for Python library.
12 versions - Latest release: over 1 year ago - 1 dependent repositories - 95 downloads last month - 0 stars on GitLab.com - 1 maintainer
nwb-datajoint 0.2.6
Neuroscience data pipeline for reproducible research used by Loren Frank Lab, UCSF
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 74 stars on GitHub - 1 maintainer
npyx 4.0.6
Python routines dealing with Neuropixels data.
72 versions - Latest release: 9 days ago - 2 dependent repositories - 876 downloads last month - 98 stars on GitHub - 1 maintainer
neurotic 1.5.0
Curate, visualize, annotate, and share your behavioral ephys data using Python
20 versions - Latest release: over 3 years ago - 1 dependent repositories - 180 downloads last month - 29 stars on GitHub - 1 maintainer
neuroglia 0.1.0
scikit-learn compatible transformers for neural data science
1 version - Latest release: over 6 years ago - 1 dependent repositories - 31 downloads last month - 36 stars on GitHub - 2 maintainers
neural-activity-resource 0.1.0
Python API for the Human Brain Project Neural Activity Resource
1 version - Latest release: about 6 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
mselair-aisc 0.1.4 removed
Python package for EEG sleep classification and analysis.
11 versions - Latest release: about 3 years ago - 1 dependent package - 42 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
klustakwik2 0.2.7
Clustering for high dimensional neural data
12 versions - Latest release: almost 5 years ago - 1 dependent package - 10 dependent repositories - 207 downloads last month - 28 stars on GitHub - 4 maintainers
Top 9.6% on pypi.org
herdingspikes 0.3.102
Efficient spike detection and sorting for dense MEA
9 versions - Latest release: almost 2 years ago - 2 dependent packages - 8 dependent repositories - 97 downloads last month - 26 stars on GitHub - 3 maintainers
gebaspike 1.1.0
gebaSpike - GUI designed to improve manual spike sorting of in-vivo electrophysiology data.
12 versions - Latest release: almost 4 years ago - 1 dependent repositories - 120 downloads last month - 1 stars on GitHub - 1 maintainer
egegsignals 1.0.6
Package for processing EGG/EGEG signals
7 versions - Latest release: over 5 years ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
egegrouper 0.7.1
Tool for grouping EGEG examinations
11 versions - Latest release: about 6 years ago - 1 dependent repositories - 112 downloads last month - 1 maintainer
ebosc 0.10.dev0
extended Better Oscillation Detection, implemented in python3
1 version - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 4 stars on GitHub - 1 maintainer
dopltech-sdk 1.0.2
Dopl Technologies SDK
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
demounit 0.0.5
A SciUnit library for data-driven testing of neurons.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
demotestunit 1.2.0
A SciUnit library for data-driven testing of neurons.
1 version - Latest release: about 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
emodel-generalisation 0.2.10
Generalisation of neuronal electrical models with MCMC
12 versions - Latest release: 2 months ago - 73 downloads last month - 3 stars on GitHub - 1 maintainer
bycycle 1.1.0
Cycle-by-cycle analyses of neural oscillations.
9 versions - Latest release: about 1 year ago - 2 dependent repositories - 203 downloads last month - 78 stars on GitHub - 2 maintainers
blechpy 2.2.14
Package for exrtacting, processing and analyzing Intan and OpenEphys data
157 versions - Latest release: 18 days ago - 2 dependent repositories - 1.24 thousand downloads last month - 10 stars on GitHub - 2 maintainers
biosimulations-modeldb 0.0.4
Command-line program for publishing the ModelDB model repository to BioSimulations.
3 versions - Latest release: about 2 years ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
biopeaks 1.4.4
A graphical user interface for feature extraction from heart- and breathing biosignals.
19 versions - Latest release: over 2 years ago - 1 dependent repositories - 230 downloads last month - 56 stars on GitHub - 1 maintainer
binmsgui 1.0.4
BinMSGUI, sorts .bin data through MountainSort and exports as Tint format.
5 versions - Latest release: over 4 years ago - 74 downloads last month - 1 stars on GitHub - 2 maintainers
binconverter 1.0.4
BinConverter - GUI that will allow the user to convert the raw (.bin) files from Axona's Tint sof...
5 versions - Latest release: over 4 years ago - 1 dependent repositories - 54 downloads last month - 5 stars on GitHub - 1 maintainer
axopy 0.2.3
Human-computer interface experimentation library
7 versions - Latest release: over 5 years ago - 2 dependent repositories - 72 downloads last month - 23 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
mnelab 0.9.0
A graphical user interface for MNE
27 versions - Latest release: 4 months ago - 3 dependent repositories - 488 downloads last month - 222 stars on GitHub - 1 maintainer
miv-os 0.2.4
Python software for analysis and computing framework used in MiV project.
24 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 12 stars on GitHub - 1 maintainer
elecphys 0.0.56
Electrophysiology data processing
12 versions - Latest release: 2 months ago - 68 downloads last month - 1 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
neurora 1.1.1
A Python Toolbox for Multimodal Neural Data Representation Analysis
151 versions - Latest release: about 4 years ago - 3 dependent repositories - 1.75 thousand downloads last month - 149 stars on GitHub - 1 maintainer
ephys-link 1.3.0
A Python Socket.IO server that allows any Socket.IO-compliant application to communicate with man...
46 versions - Latest release: 10 days ago - 1 dependent repositories - 462 downloads last month - 1 stars on GitHub - 2 maintainers
kilosort 4.0.7
spike sorting pipeline
8 versions - Latest release: 10 days ago - 1.77 thousand downloads last month - 393 stars on GitHub - 2 maintainers
element-array-ephys 0.2.11
DataJoint Element for Extracellular Array Electrophysiology
14 versions - Latest release: 11 months ago - 2 dependent repositories - 187 downloads last month - 3 stars on GitHub - 1 maintainer
cleosim 0.14.3
Cleo: the Closed-Loop, Electrophysiology, and Optogenetics experiment simulation testbed
22 versions - Latest release: 11 days ago - 2 dependent repositories - 250 downloads last month - 8 stars on GitHub - 1 maintainer
openmnglab 0.3.0
A Python framework for microneurography analysis
6 versions - Latest release: 7 months ago - 46 downloads last month - 0 stars on GitHub - 2 maintainers
swc-ephys 0.0.0
Manage extracellular electrophysiology analysis
1 version - Latest release: 10 months ago - 14 downloads last month - 8 stars on GitHub - 1 maintainer
efelunit 2.0.3
A SciUnit library for data-driven testing of neuronal morphologies.
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 48 downloads last month - 0 stars on GitHub - 1 maintainer
ephypype 0.5
Python package providing pipelines for electrophysiological (EEG/MEG) data within nipype framework.
8 versions - Latest release: over 1 year ago - 1 dependent repositories - 65 downloads last month - 23 stars on GitHub - 2 maintainers
axographio 0.3.2
A Python package for reading and writing AxoGraph data files
6 versions - Latest release: about 3 years ago - 4 dependent repositories - 108 downloads last month - 2 stars on GitHub - 2 maintainers
spikeinterface-pipelines 0.0.11
Collection of standardized analysis pipelines based on SpikeInterfacee.
10 versions - Latest release: 24 days ago - 65 downloads last month - 3 stars on GitHub - 2 maintainers
tdms2axg 0.2.0
A simple script for converting LabVIEW TDMS files to AxoGraph files
4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
fairgraph 0.12.0
Python API for the EBRAINS Knowledge Graph
17 versions - Latest release: 30 days ago - 1 dependent repositories - 195 downloads last month - 10 stars on GitHub - 1 maintainer
brainspike 1.0.31 removed
Python toolbox for high-throughput patch-clamp analysis
27 versions - Latest release: over 1 year ago - 656 downloads last month - 1 maintainer
Related Keywords
neuroscience 52 python 28 neurophysiology 9 eeg 8 data-analysis 8 spike-sorting 8 meg 6 signal-processing 6 data analysis 6 EEG 5 analysis 5 gui 4 ecg 4 data 4 spikes 4 neuron 4 phy 4 neural oscillations 4 spikeinterface 3 spike sorting 3 patch-clamp 3 axona 3 physiology 3 nwb 3 ecog 3 datajoint 3 python3 3 sorting 3 mne 3 cardiac 3 ephys 3 visualization 3 computational-neuroscience 3 neuropixels 2 ECG 2 open-science 2 compression 2 kilosort 2 neurons 2 power spectra 2 1/f 2 lfp 2 local-field-potential 2 oscillations 2 power-spectral-density 2 hacktoberfest 2 statistics 2 MEG 2 BlueBrainProject 2 numpy 2 zlib 2 bin 2 electrogastroenterography 2 electrogastrography 2 tint 2 kachery 2 detection 2 research 2 sortingview 2 mef 2 multi-electrode-array 2 neural-recording 2 electrical 2 testing 2 validation framework 2 microneurography 2 chronometry 2 metadata 2 hbp 2 spike-detection 2 GUI 2 biosignals 1 Biosignals 1 Breathing 1 bitalino 1 breathing 1 breathing-rate 1 edf 1 heart 1 heart-rate 1 opensignals 1 peak-detection 1 lossless 1 dataset 1 neural rhythms 1 dopl 1 technologies 1 telerobotics 1 sdk 1 medicine 1 generalisation 1 mcmc 1 waveform 1 shape 1 blech 1 katz_lab 1 Intan 1 systems biology 1 computational biology 1 mathematical modeling 1