Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroscience" keyword

vineseg 0.1.6
Image Polygonal Annotation with Python
53 versions - Latest release: 3 months ago - 1 dependent repositories - 223 downloads last month - 1 stars on GitHub - 1 maintainer
pyflies 0.5.1
A Domain-Specific Language (DSL) for experiments specification in psychology and neuroscience
7 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 84 downloads last month - 14 stars on GitHub - 1 maintainer
Top 8.0% on pypi.org
tvb-framework 2.8.2
A package for performing whole brain simulations
23 versions - Latest release: 8 months ago - 2 dependent packages - 3 dependent repositories - 746 downloads last month - 99 stars on GitHub - 1 maintainer
simply-nwb 0.6.2
Common NWB use cases and simplified interface for common usage
22 versions - Latest release: 4 months ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 2 maintainers
tvb-bids-monitor 2.8.1
A helper package containing BIDS directory monitor module
5 versions - Latest release: 12 months ago - 89 downloads last month - 99 stars on GitHub - 1 maintainer
decodanda 0.6.13
Geometric decoding of neural data with built-in best practices.
17 versions - Latest release: about 1 month ago - 140 downloads last month - 26 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
mtscomp 1.0.2
Lossless compression for electrophysiology time-series
5 versions - Latest release: about 3 years ago - 7 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 27 stars on GitHub - 3 maintainers
pylossless 0.1.0
Python port of EEG-IP-L pipeline for preprocessing EEG.
1 version - Latest release: about 1 year ago - 20 downloads last month - 13 stars on GitHub - 1 maintainer
neurodynex 0.3.4
Python exercises accompanying the book Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, ...
5 versions - Latest release: about 7 years ago - 6 dependent repositories - 62 downloads last month - 228 stars on GitHub - 2 maintainers
tvb-storage 2.8.1
A package which handles the storage of TVB data
9 versions - Latest release: 12 months ago - 2 dependent packages - 1 dependent repositories - 491 downloads last month - 99 stars on GitHub - 1 maintainer
neurodynex3 1.0.4
Python exercises accompanying the book Neuronal Dynamics by Wulfram Gerstner, Werner M. Kistler, ...
14 versions - Latest release: 2 months ago - 1 dependent repositories - 407 downloads last month - 1 maintainer
sco-worker 0.4.0
Library to to execute predictive model run requests
7 versions - Latest release: almost 7 years ago - 1 dependent repositories - 31 downloads last month - 0 stars on GitHub - 1 maintainer
ssm-simulators 0.7.2
SSMS is a package collecting simulators and training data generators for a bunch of generative mo...
13 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 1.78 thousand downloads last month - 10 stars on GitHub - 1 maintainer
patchview 0.3.2
Patchview perform data analysis and visualization on whole-cell recording data, including firing ...
10 versions - Latest release: 1 day ago - 117 downloads last month - 13 stars on GitHub - 1 maintainer
pciseq 0.0.61
Probabilistic cell typing for spatial transcriptomics
62 versions - Latest release: about 2 months ago - 1 dependent repositories - 284 downloads last month - 22 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
element-interface 0.6.1
Loaders of neurophysiological data into the DataJoint Elements
9 versions - Latest release: 10 months ago - 7 dependent packages - 10 dependent repositories - 192 downloads last month - 3 stars on GitHub - 1 maintainer
tvb-rest-client 2.8.1
A helper package for preparing and sending requests towards the TVB REST API
21 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 352 downloads last month - 99 stars on GitHub - 1 maintainer
Top 4.5% on pypi.org
tvb-library 2.8.2
A package for performing whole brain simulations
31 versions - Latest release: 8 months ago - 7 dependent packages - 7 dependent repositories - 1.25 thousand downloads last month - 99 stars on GitHub - 1 maintainer
ephysvibe 0.0.2
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2 versions - Latest release: over 1 year ago - 28 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
phylib 2.5.0
Ephys data analysis for thousands of channels
10 versions - Latest release: 2 days ago - 3 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 10 stars on GitHub - 3 maintainers
tvb-contrib 2.8.2
A package with TVB contributed additions to the simulator, useful for scripting.
15 versions - Latest release: 8 months ago - 1 dependent repositories - 228 downloads last month - 99 stars on GitHub - 1 maintainer
tvb 2.0.0
This namespace is only redirecting to tvb-library
5 versions - Latest release: about 1 year ago - 3 dependent repositories - 85 downloads last month - 99 stars on GitHub - 1 maintainer
Top 1.9% on pypi.org
antropy 0.1.6 💰
AntroPy: entropy and complexity of time-series in Python
4 versions - Latest release: 10 months ago - 13 dependent packages - 20 dependent repositories - 31.1 thousand downloads last month - 263 stars on GitHub - 1 maintainer
pacpy 1.0.3
A module to calculate phase-amplitude coupling
5 versions - Latest release: 9 months ago - 3 dependent repositories - 40 downloads last month - 24 stars on GitHub - 1 maintainer
pylabianca 0.2.0
Package for analysis of single-neuron spike data.
2 versions - Latest release: 5 months ago - 22 downloads last month - 3 stars on GitHub - 1 maintainer
nemos 0.1.3
NEural MOdelS, a statistical modeling framework for neuroscience.
4 versions - Latest release: 3 days ago - 107 downloads last month - 30 stars on GitHub - 1 maintainer
temp-dec 1.0.9
Supervised learning function for temporal decoding.
9 versions - Latest release: over 2 years ago - 1 dependent repositories - 90 downloads last month - 1 stars on GitHub - 1 maintainer
imaging-transcriptomics 1.1.11
A package to perform imaging transcriptomics analysis on a neuroimaging brain scan.
16 versions - Latest release: over 1 year ago - 1 dependent repositories - 176 downloads last month - 14 stars on GitHub - 1 maintainer
psychrnn 1.0.0
Easy-to-use package for the modeling and analysis of neural network dynamics, directed towards co...
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 47 downloads last month - 133 stars on GitHub - 2 maintainers
replay-classification 0.6.1
Non-parametric categorization of replay content from multiunit spiking activity
15 versions - Latest release: over 5 years ago - 1 dependent repositories - 154 downloads last month - 8 stars on GitHub - 1 maintainer
dmipy 1.0.5
dmipy: diffusion microstructure imaging in python
4 versions - Latest release: over 3 years ago - 3 dependent repositories - 96 downloads last month - 93 stars on GitHub - 2 maintainers
itk-tubetk 1.3.6
An open-source toolkit, led by Kitware, Inc., for the segmentation, registration, and analysis of...
16 versions - Latest release: 4 months ago - 2 dependent repositories - 932 downloads last month - 40 stars on GitHub - 2 maintainers
Top 9.2% on pypi.org
neuropythy 0.12.13
Toolbox for flexible cortical mesh analysis and registration
119 versions - Latest release: 10 months ago - 8 dependent repositories - 535 downloads last month - 111 stars on GitHub - 1 maintainer
itk-iomeshswc 0.2.0
ITK module for reading meshes from SWC files, a format for representing neuron morphology.
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 255 downloads last month - 1 stars on GitHub - 1 maintainer
musclebeachtools 1.2.1
This package used to analyze neuron data, from basic plotting (ISI histograms, firi...
2 versions - Latest release: about 1 year ago - 23 downloads last month - 4 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
brainflow 5.12.1 💰
Python Binding for BrainFlow
92 versions - Latest release: 3 months ago - 3 dependent packages - 58 dependent repositories - 2.08 thousand downloads last month - 1,207 stars on GitHub - 1 maintainer
datashuttle 0.4.0
DataShuttle automates the creation and management of standardised neuroscience project folders.
7 versions - Latest release: about 1 month ago - 142 downloads last month - 12 stars on GitHub - 3 maintainers
brainglobe-atlasapi 2.0.6
A lightweight python module to interact with and generate atlases for systems neuroscience.
7 versions - Latest release: 4 days ago - 8 dependent packages - 5.14 thousand downloads last month - 112 stars on GitHub - 3 maintainers
rutishauserlabtonwb 1.1.0
Export and Analysis Code for NWB:N
7 versions - Latest release: over 3 years ago - 1 dependent repositories - 53 downloads last month - 16 stars on GitHub - 1 maintainer
visiomode 0.5.2
An open-source platform for touchscreen-based visuomotor tasks in rodents.
12 versions - Latest release: about 1 year ago - 1 dependent repositories - 98 downloads last month - 3 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
brainrender 2.1.9
Visualisation and exploration of brain atlases and other anatomical data
87 versions - Latest release: 4 days ago - 6 dependent packages - 5 dependent repositories - 2.36 thousand downloads last month - 475 stars on GitHub - 3 maintainers
Top 9.3% on pypi.org
clinica 0.8.1
Software platform for clinical neuroimaging studies
38 versions - Latest release: 24 days ago - 1 dependent package - 1 dependent repositories - 412 downloads last month - 214 stars on GitHub - 4 maintainers
element-event 0.2.3
DataJoint Elements for Trialized Experiments
3 versions - Latest release: 11 months ago - 1 dependent package - 3 dependent repositories - 91 downloads last month - 0 stars on GitHub - 1 maintainer
theonerig 1.0.2
Timeseries synchronisation toolkit for computational neuroscience
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 55 downloads last month - 1 stars on GitHub - 1 maintainer
clinicadl 1.6.1
Framework for the reproducible processing of neuroimaging data with deep learning methods
33 versions - Latest release: about 1 month ago - 1 dependent repositories - 221 downloads last month - 152 stars on GitHub - 4 maintainers
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 192 downloads last month - 22 stars on GitHub - 1 maintainer
element-facemap 0.1.7
Facemap DataJoint element
2 versions - Latest release: 7 months ago - 1 dependent repositories - 30 downloads last month - 3 stars on GitHub - 1 maintainer
d2b-asl 2.0.0
Plugin for the d2b package to handle ASL data
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
pynems 0.0.3
Fit and evaluate models of sensory encoding and decoding.
3 versions - Latest release: over 1 year ago - 33 downloads last month - 9 stars on GitHub - 1 maintainer
opexebo 0.7.2
Collection of python code in Kavli lab.
7 versions - Latest release: 7 months ago - 1 dependent repositories - 85 downloads last month - 7 stars on GitHub - 1 maintainer
missingdata 0.1.3
missing data visualization and imputation
5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 75 downloads last month - 17 stars on GitHub - 1 maintainer
real-time-tf 0.1.2
Real time time frequency plotting of EEG data from the Muse headset.
3 versions - Latest release: 10 months ago - 21 downloads last month - 7 stars on GitHub - 1 maintainer
nwbmatic 0.1.2
NWB creator from various data streams
3 versions - Latest release: 7 months ago - 28 downloads last month - 2 stars on GitHub - 1 maintainer
mni-to-atlas 1.1.0
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
6 versions - Latest release: 5 months ago - 75 downloads last month - 8 stars on GitHub - 1 maintainer
sapicore 0.1.1
A PyTorch-based framework for neuromorphic modeling
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 30 downloads last month - 2 stars on GitHub - 2 maintainers
roicat 1.1.38
A library for classifying and tracking ROIs.
37 versions - Latest release: about 1 month ago - 2 dependent repositories - 249 downloads last month - 9 stars on GitHub - 2 maintainers
neurocarto 0.0.0
A web-interface channelmap editor for Neuropixels probe familiy
1 version - Latest release: 5 days ago - 112 downloads last month - 1 stars on GitHub - 1 maintainer
hu-neuro-pipeline 0.8.5
Single trial EEG pipeline at the Abdel Rahman Lab for Neurocognitive Psychology, Humboldt-Univers...
31 versions - Latest release: about 1 month ago - 1 dependent repositories - 355 downloads last month - 12 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
lava-nc 0.9.0
A Software Framework for Neuromorphic Computing
5 versions - Latest release: 6 months ago - 5 dependent packages - 7 dependent repositories - 293 downloads last month - 510 stars on GitHub - 2 maintainers
jagular 0.0.2
Out-of-core pre-processing of big-ish electrophysiology data.
2 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 3 stars on GitHub - 1 maintainer
sparseedges 0.3.1
SparseEdges: A bio-inspired sparse representation of edges in natural images.
10 versions - Latest release: over 7 years ago - 1 dependent repositories - 150 downloads last month - 1 stars on GitHub - 2 maintainers
nest-on-square-wheels 3.0.2
Python bindings for NEST
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 510 stars on GitHub - 1 maintainer
eyelinkio 0.1.0
A lightweight library for reading Eyelink Data Format files in Python.
1 version - Latest release: about 2 months ago - 25 downloads last month - 1 stars on GitHub - 1 maintainer
bluepyemodel 0.0.113
Blue Brain Python Electrical Modeling Pipeline
97 versions - Latest release: 3 days ago - 1.37 thousand downloads last month - 3 stars on GitHub - 2 maintainers
eeg-fconn 1.2.0
To compute the functional connectivity from EEG in various bands
5 versions - Latest release: 7 months ago - 74 downloads last month - 6 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
ipfx 1.0.8
Intrinsic Physiology Feature Extractor (IPFX) - tool for computing neuronal features from the int...
10 versions - Latest release: 11 months ago - 1 dependent package - 7 dependent repositories - 161 downloads last month - 24 stars on GitHub - 1 maintainer
spyglass-neuro 0.5.2
Neuroscience data analysis framework for reproducible research
23 versions - Latest release: 27 days ago - 1 dependent repositories - 440 downloads last month - 78 stars on GitHub - 3 maintainers
Top 9.6% on pypi.org
modeci-mdf 0.4.10
ModECI (Model Exchange and Convergence Initiative) Model Description Format
15 versions - Latest release: 20 days ago - 1 dependent package - 1 dependent repositories - 13.4 thousand downloads last month - 36 stars on GitHub - 2 maintainers
Top 9.3% on pypi.org
psyneulink 0.15.1.0
A block modeling system for cognitive neuroscience
73 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 989 downloads last month - 83 stars on GitHub - 1 maintainer
simuran 23.8.0
Simultaneous Multi-region Analysis supported with a network style
2 versions - Latest release: 10 months ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
deepneuro 0.2.3
DeepNeuro: A deep learning python package for neuroimaging data.
6 versions - Latest release: almost 5 years ago - 1 dependent repositories - 51 downloads last month - 121 stars on GitHub - 2 maintainers
neurochat 1.2.0
NeuroChaT: Neuron Characterisation Toolbox
2 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 19 downloads last month - 4 stars on GitHub - 2 maintainers
Top 6.8% on pypi.org
dcm2bids 3.1.1
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
24 versions - Latest release: 7 months ago - 7 dependent repositories - 3.07 thousand downloads last month - 147 stars on GitHub - 2 maintainers
mne-lsl 1.3.1
Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compa...
6 versions - Latest release: about 2 months ago - 1 dependent package - 1.26 thousand downloads last month - 48 stars on GitHub - 3 maintainers
Top 2.4% on pypi.org
spikeinterface 0.100.6
Python toolkit for analysis, visualization, and comparison of spike sorting output
30 versions - Latest release: 19 days ago - 15 dependent packages - 21 dependent repositories - 78.2 thousand downloads last month - 419 stars on GitHub - 2 maintainers
movement 0.0.16
Analysis of body movement
16 versions - Latest release: 4 days ago - 4 dependent repositories - 203 downloads last month - 53 stars on GitHub - 3 maintainers
mesmerize-core 0.4.0
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
6 versions - Latest release: about 1 month ago - 1 dependent repositories - 109 downloads last month - 49 stars on GitHub - 1 maintainer
neuroboros 0.1.7
Neuroimaging analysis in Python
9 versions - Latest release: 3 months ago - 1.4 thousand downloads last month - 3 stars on GitHub - 1 maintainer
neuraltoolkit 0.3.1
A powerful and fast set of tools for loading data, filtering, processing, working ...
2 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 36 downloads last month - 8 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
neurodsp 2.2.1
Digital signal processing for neural time series.
11 versions - Latest release: over 1 year ago - 3 dependent packages - 11 dependent repositories - 3.84 thousand downloads last month - 275 stars on GitHub - 3 maintainers
dendro 0.2.16
Web framework for neurophysiology data analysis
59 versions - Latest release: 5 days ago - 699 downloads last month - 12 stars on GitHub - 1 maintainer
optinist 1.2.1
Calcium Imaging Pipeline Tool
14 versions - Latest release: about 1 month ago - 177 downloads last month - 33 stars on GitHub - 1 maintainer
pyusbdux 2.1.0
API for the USB-DUX DAQ boxes for Linux (https://github.com/glasgowneuro/usbdux)
13 versions - Latest release: over 1 year ago - 1 dependent repositories - 73 downloads last month - 11 stars on GitHub - 1 maintainer
brainblocks 0.7.1
BrainBlocks Toolkit
1 version - Latest release: almost 2 years ago - 1 dependent repositories - 139 downloads last month - 60 stars on GitHub - 1 maintainer
cellfinder 1.2.0
Automated 3D cell detection in large microscopy images
97 versions - Latest release: 4 days ago - 3 dependent packages - 2.46 thousand downloads last month - 170 stars on GitHub - 2 maintainers
brainreg 1.0.9
Automated multi-atlas whole-brain microscopy registration
45 versions - Latest release: 4 days ago - 6 dependent packages - 1 dependent repositories - 1.6 thousand downloads last month - 108 stars on GitHub - 2 maintainers
Top 5.4% on pypi.org
brainpylib 0.3.1
C++/CUDA Library for BrainPy
33 versions - Latest release: about 2 months ago - 6 dependent packages - 2 dependent repositories - 4.33 thousand downloads last month - 421 stars on GitHub - 2 maintainers
brainpylib-cu11x 0.2.8
C++/CUDA Library for BrainPy
10 versions - Latest release: 3 months ago - 1 dependent package - 210 downloads last month - 421 stars on GitHub - 1 maintainer
brainpylib-cu12x 0.2.8
C++/CUDA Library for BrainPy
10 versions - Latest release: 3 months ago - 1 dependent package - 197 downloads last month - 421 stars on GitHub - 1 maintainer
k-wave-python 0.3.3
Acoustics toolbox for time domain acoustic and ultrasound simulations in complex and tissue-reali...
8 versions - Latest release: about 2 months ago - 2 dependent repositories - 231 downloads last month - 75 stars on GitHub - 1 maintainer
neurots 3.6.0
Synthesis of artificial neurons using their topological profiles package.
12 versions - Latest release: 4 days ago - 1 dependent repositories - 786 downloads last month - 34 stars on GitHub - 3 maintainers
mne-bids-pipeline 1.8.0
A full-flegded processing pipeline for your MEG and EEG data
13 versions - Latest release: 2 months ago - 1 dependent repositories - 181 downloads last month - 128 stars on GitHub - 2 maintainers
Top 2.8% on pypi.org
mne-qt-browser 0.6.2
A new backend based on pyqtgraph for the 2D-Data-Browser in MNE-Python
24 versions - Latest release: 2 months ago - 10 dependent packages - 18 dependent repositories - 4.27 thousand downloads last month - 38 stars on GitHub - 2 maintainers
diameter-synthesis 0.6.0
Diametrize cells.
14 versions - Latest release: 4 days ago - 3 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 3 stars on GitHub - 2 maintainers
nelpy 0.2.1
Neuroelectrophysiology object model and data analysis in Python.
14 versions - Latest release: over 5 years ago - 1 dependent repositories - 85 downloads last month - 45 stars on GitHub - 1 maintainer
scdn 0.0.2
Estimating high dimensional ODE models from convoluted observations with an application to fMRI
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 35 downloads last month - 3 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
16 versions - Latest release: over 1 year ago - 11 dependent packages - 50 dependent repositories - 16.5 thousand downloads last month - 121 stars on GitHub - 3 maintainers
Top 5.5% on pypi.org
rsatoolbox 0.1.5
Representational Similarity Analysis (RSA) in Python
45 versions - Latest release: 6 months ago - 1 dependent package - 3 dependent repositories - 2.75 thousand downloads last month - 154 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
sleap 1.4.0
SLEAP (Social LEAP Estimates Animal Poses) is a deep learning framework for animal pose tracking.
64 versions - Latest release: about 1 month ago - 2 dependent repositories - 1.48 thousand downloads last month - 377 stars on GitHub - 2 maintainers
brainreg-segment 0.2.20
Manual segmentation of 3D brain structures in a common anatomical space
35 versions - Latest release: 5 months ago - 3 dependent packages - 1 dependent repositories - 360 downloads last month - 28 stars on GitHub - 3 maintainers