Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "protein-sequences" keyword
protenc 0.1.6
Extract protein embeddings from protein language models.7 versions - Latest release: 8 months ago - 142 downloads last month - 4 stars on GitHub - 1 maintainer
evodiff 1.1.0
Python package for generation of protein sequences and evolutionary alignments via discrete diffu...15 versions - Latest release: 9 months ago - 290 downloads last month - 425 stars on GitHub - 1 maintainer
deepnog 1.2.3
Deep learning tool for protein orthologous group assignment4 versions - Latest release: over 3 years ago - 2 dependent repositories - 131 downloads last month - 24 stars on GitHub - 2 maintainers
fastaframes 1.1.0
A very simple fasta file parser.5 versions - Latest release: 8 months ago - 70 downloads last month - 3 stars on GitHub - 1 maintainer
ablang 0.3.1
AbLang: A language model for antibodies.4 versions - Latest release: 9 months ago - 1 dependent package - 857 downloads last month - 103 stars on GitHub - 1 maintainer
mdeepfri 1.1.5
Pipeline for searching and aligning contact maps for proteins, and function prediction with DeepFRI.6 versions - Latest release: 2 months ago - 365 downloads last month - 29 stars on GitHub - 1 maintainer
protein-bert-pytorch 0.1.0
ProteinBERT - Pytorch10 versions - Latest release: almost 3 years ago - 1 dependent repositories - 77 downloads last month - 145 stars on GitHub - 1 maintainer
discere 0.0.4
Protein Feature Extraction package for Machine Learning1 version - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 17 stars on GitHub - 1 maintainer
tranception-pytorch-dohlee 0.0.5
Tranception - Pytorch5 versions - Latest release: over 1 year ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
rafm 1.1.4
rafm10 versions - Latest release: over 2 years ago - 1 dependent repositories - 47 downloads last month - 1 stars on GitHub - 1 maintainer
protpy 1.2.1
Python package for generating various biochemical, physicochemical and structural descriptors/fea...16 versions - Latest release: 6 months ago - 1 dependent package - 167 downloads last month - 7 stars on GitHub - 1 maintainer
abyssal-pytorch 0.0.5
Abyssal - Pytorch4 versions - Latest release: over 1 year ago - 50 downloads last month - 6 stars on GitHub - 1 maintainer
mmtfpyspark 0.3.6
Methods for parallel and distributed analysis and mining of the Protein Data Bank using MMTF and ...10 versions - Latest release: over 5 years ago - 1 dependent repositories - 41 downloads last month - 67 stars on GitHub - 2 maintainers
spectrae 0.1.1
SPECTRA: The spectral framework for model evaluation3 versions - Latest release: about 2 months ago - 350 downloads last month - 13 stars on GitHub - 1 maintainer
antiberty-pytorch 0.0.1
Antiberty - Pytorch1 version - Latest release: about 1 year ago - 30 downloads last month - 22 stars on GitHub - 1 maintainer
pypef 0.3.3
A command-line interface (CLI) tool for performing data-driven protein engineering by building ma...13 versions - Latest release: 5 months ago - 1 dependent repositories - 78 downloads last month - 18 stars on GitHub - 1 maintainer
cazy-webscraper 2.3.0
A tool to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly in...31 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 226 downloads last month - 13 stars on GitHub - 2 maintainers
Top 3.7% on pypi.org
19 versions - Latest release: 27 days ago - 6 dependent packages - 21 dependent repositories - 1.44 thousand downloads last month - 289 stars on GitHub - 1 maintainer
pypdb 2.4
A Python wrapper for the RCSB Protein Data Bank (PDB) API19 versions - Latest release: 27 days ago - 6 dependent packages - 21 dependent repositories - 1.44 thousand downloads last month - 289 stars on GitHub - 1 maintainer
protfeat 1.1
Installation of Package2 versions - Latest release: about 2 years ago - 1 dependent repositories - 58 downloads last month - 16 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
12 versions - Latest release: almost 3 years ago - 4 dependent repositories - 1.06 thousand downloads last month - 438 stars on GitHub - 3 maintainers
bio-embeddings 0.2.2 💰
A pipeline for protein embedding generation and visualization12 versions - Latest release: almost 3 years ago - 4 dependent repositories - 1.06 thousand downloads last month - 438 stars on GitHub - 3 maintainers
progen-torch 0.0.4 💰
Paper - Pytorch2 versions - Latest release: 8 months ago - 16 downloads last month - 5 stars on GitHub - 1 maintainer
graph-part 1.0.2
Graph-based partitioning of biological sequence data5 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 88 downloads last month - 19 stars on GitHub - 1 maintainer
Top 4.2% on pypi.org
5 versions - Latest release: almost 3 years ago - 1 dependent package - 15 dependent repositories - 1.67 thousand downloads last month - 626 stars on GitHub - 1 maintainer
tape-proteins 0.5
Repostory of Protein Benchmarking and Modeling5 versions - Latest release: almost 3 years ago - 1 dependent package - 15 dependent repositories - 1.67 thousand downloads last month - 626 stars on GitHub - 1 maintainer
pepnet 0.3.2
Neural networks for amino acid sequences3 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 20 stars on GitHub - 3 maintainers
Top 8.7% on pypi.org
2 versions - Latest release: almost 3 years ago - 2 dependent repositories - 237 downloads last month - 626 stars on GitHub - 2 maintainers
bio-embeddings-tape-proteins 0.5
Repostory of Protein Benchmarking and Modeling2 versions - Latest release: almost 3 years ago - 2 dependent repositories - 237 downloads last month - 626 stars on GitHub - 2 maintainers
pypro2 0.0.1 removed
Calculating a range of protein descriptors using their physiochemical, biological and structural ...1 version - Latest release: over 1 year ago - 0 stars on GitHub
Related Keywords
bioinformatics
12
protein
11
protein-structure
10
deep-learning
9
machine-learning
7
artificial intelligence
5
python
4
biology
4
biological-data-analysis
3
protein-language-model
3
computational-biology
3
genomics
3
sequence
3
proteomics
2
language-model
2
protein-data-bank
2
deep learning
2
artificial-intelligence
2
machine
2
learning
2
feature-extraction
2
reproduction
2
reproduction-code
2
pypi
2
aaindex
2
protein-structure-prediction
2
semi-supervised-learning
2
fasta
2
pytorch
2
neural-networks
2
language-modeling
2
dataset
2
benchmark
2
Engineering
1
Framework
1
in-silico
1
protein-engineering
1
evolution
1
protein-fitness-prediction
1
python3
1
regression
1
bioinforamtics
1
webscraper
1
carbohydrates
1
cazy
1
cazy-family
1
cazy-webscraper
1
cazymes
1
directed
1
drug-discovery
1
descriptors
1
protein-protein-interaction
1
scientific-computing
1
benchmark-framework
1
benchmarking
1
foundation-models
1
geometric-deep-learning
1
large-language-models
1
antibody
1
protein language model
1
antibody-sequence
1
SAR
1
antibody-sequences
1
Pythonic
1
relationships
1
activity
1
Protein
1
ifeature
1
position-specific-scoring
1
possum
1
pssm-matrix
1
bio-embeddings
1
embedders
1
pipeline
1
train-test-split
1
protein-prediction
1
sequence-embeddings
1
dna-sequences
1
optimizers
1
protein-design
1
gpt-4
1
Prompt Engineering
1
attention-mechanism
1
bioml
1
engineering
1
TAPE
1
database
1
enzymes
1
genbank
1
gtdb
1
protein-structures
1
Pytorch
1
scraper
1
data
1
RESTful
1
api
1
blast
1
pdb
1
Deep Learning
1
Proteins
1