Ecosyste.ms: Packages

bioinformatics 68 python 33 systems-biology 28 biology 23 sbml 17 simulation 17 deep-learning 16 sed-ml 15 machine-learning 15 computational biology 14 biosimulators 13 modeling 12 genomics 12 single-cell 12 metabolism 11 visualization 10 combine 10 protein 10 systems biology 10 omex 9 SBML 9 artificial intelligence 9 systems 9 rna-seq 8 BioSimulators 8 metabolic-models 8 single-cell-rna-seq 8 SED-ML 8 biochemistry 8 big-data 8 COMBINE 7 protein-structure 7 biochemical-networks 7 manifold-learning 6 gene-expression 6 phylogenetics 6 computational-chemistry 6 OMEX 6 molecular-dynamics 6 data-science 5 computational 5 single-cell-analysis 5 omex-metadata 5 cell-biology 5 numerical simulation 5 combine-archive 5 structural-biology 5 metabolic-network 5 flux-balance-analysis 5 reproduction-code 5 reproduction 5 docker 5 mathematical model 4 fba 4 mathematical-model 4 kinetic model 4 pseudo-time 4 kinetics 4 dynamical-modeling 4 microbiome 4 cobra 4 flux 4 dimensionality-reduction 4 embedding 4 strain-engineering 4 sbml-model 4 pytorch 3 spatial-transcriptomics 3 whole-cell 3 protein-design 3 metagenomics 3 phylogenetic-trees 3 drug-discovery 3 whole-cell-modeling 3 prediction 3 evolution 3 hpc 3 personalized-medicine 3 cancer-research 3 microbiology 3 sbml-simulation 3 protein-sequences 3 cell-design 3 unsupervised-learning 3 clustering 3 cobrapy 3 analysis 3 python3 3 algorithm 3 pandas 2 quantum-chemistry-packages 2 hi-c 2 quantum-chemistry-programs 2 theoretical-chemistry 2 transformer 2 phylogeny 2 interactions 2 qPCR 2 cancer 2 mathematical-modelling 2