Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
repo1.maven.org "bioinformatics" keyword
de.bioforscher.singa:singa-all 0.3.3
SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing t...8 versions - Latest release: about 6 years ago - 8 stars on GitHub
org.broadinstitute:gatk 4.5.0.0
Development on GATK 448 versions - Latest release: 5 months ago - 2 dependent packages - 3 dependent repositories - 1,396 stars on GitHub
org.broadinstitute:gatk-test-utils 4.5.0.0
Development on GATK 429 versions - Latest release: 5 months ago - 1,396 stars on GitHub
au.csiro.aehrc.variant-spark:variant-spark_2.12 0.5.2
Genomic variants interpretation toolkit3 versions - Latest release: over 1 year ago - 121 stars on GitHub
au.csiro.aehrc.variant-spark:variant-spark_2.11 0.4.0
Genomic variants interpretation toolkit7 versions - Latest release: almost 2 years ago - 121 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-core 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 9 dependent packages - 3 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-starlinger 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 1 dependent package - 2 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-cmdline 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 1 dependent package - 2 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-htcondorcre 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 1 dependent package - 2 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-dist 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-logview 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 1 dependent package - 2 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-dax 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 1 dependent package - 2 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-cfide 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 1 dependent package - 2 dependent repositories - 210 stars on GitHub
de.hu-berlin.wbi.cuneiform:cuneiform-addons 2.0.4-RELEASE
A Functional Workflow Language. Cuneiform is a workflow specification language which makes it eas...4 versions - Latest release: about 8 years ago - 210 stars on GitHub
io.github.egonw.bacting:net.bioclipse.managers.doi 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...23 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:net.bioclipse.managers.duckduckgo 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...30 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-cdkdebug 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:net.bioclipse.managers.pubmed 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...23 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-nm 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...19 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-rdf 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 3 dependent packages - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-cdk 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 9 dependent packages - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:bacting-bundle 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...38 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:net.bioclipse.managers.wikidata 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...36 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:net.bioclipse.managers.jsoup 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...30 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:bacting 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-ui 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 11 dependent packages - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-bioinfo 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...54 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-pubchem 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-biojava 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...46 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-bridgedb 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...54 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-chemspider 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...53 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-cheminfo 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-core 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...30 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-search 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...30 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:bacting-core 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...52 versions - Latest release: 7 days ago - 15 dependent packages - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-inchi 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 2 dependent packages - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-semweb 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...52 versions - Latest release: 7 days ago - 10 stars on GitHub
io.github.egonw.bacting:managers-xml 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...48 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-opsin 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...55 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-excel 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...54 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
io.github.egonw.bacting:managers-oscar 1.0.0
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line,...43 versions - Latest release: 7 days ago - 1 dependent package - 1 dependent repositories - 10 stars on GitHub
com.github.dylon:liblevenshtein 2.2.2
A library for spelling-correction based on Levenshtein Automata.8 versions - Latest release: about 8 years ago - 51 stars on GitHub
com.github.universal-automata:liblevenshtein 3.0.0
A library for spelling-correction based on Levenshtein Automata.4 versions - Latest release: almost 8 years ago - 16 dependent packages - 10 dependent repositories - 51 stars on GitHub
org.arvados:arvados-java-sdk 2.7.2
Arvados Java SDK13 versions - Latest release: about 1 month ago - 338 stars on GitHub
io.nextflow:nxf-drmaa 0.27.6
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...100 versions - Latest release: about 6 years ago - 1,982 stars on GitHub
edu.berkeley.cs.amplab.adam:adam-parent 0.7.2
A fast, scalable genome analysis system2 versions - Latest release: about 10 years ago - 944 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly_2.11 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
Top 9.5% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-codegen_2.10 0.23.0
A fast, scalable genome analysis system1 version - Latest release: over 6 years ago - 2 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 1 dependent repositories - 948 stars on GitHub
Top 6.8% on repo1.maven.org
14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
Top 9.3% on repo1.maven.org
8 versions - Latest release: 5 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 5 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 948 stars on GitHub
io.nextflow:nf-ignite 19.10.0
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...33 versions - Latest release: over 4 years ago - 1 dependent package - 1,982 stars on GitHub
io.nextflow:nf-ga4gh 20.10.0
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...44 versions - Latest release: over 3 years ago - 1 dependent package - 1,982 stars on GitHub
io.nextflow:nxf-console 18.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...122 versions - Latest release: over 5 years ago - 1,982 stars on GitHub
io.nextflow:nxf-extrae 0.21.3
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...48 versions - Latest release: over 7 years ago - 1,982 stars on GitHub
io.nextflow:nxf-ga4gh 18.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...8 versions - Latest release: over 5 years ago - 1,982 stars on GitHub
io.nextflow:nf-google 20.10.0
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...44 versions - Latest release: over 3 years ago - 2 dependent packages - 1 dependent repositories - 1,982 stars on GitHub
io.nextflow:nf-tower 20.10.0
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...29 versions - Latest release: over 3 years ago - 1 dependent package - 1,982 stars on GitHub
io.nextflow:nxf-httpfs 18.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...65 versions - Latest release: over 5 years ago - 1 dependent package - 1,982 stars on GitHub
io.nextflow:nxf-commons 18.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...122 versions - Latest release: over 5 years ago - 1 dependent package - 1,982 stars on GitHub
io.nextflow:nxf-gridgain 0.15.6
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...18 versions - Latest release: over 8 years ago - 1,982 stars on GitHub
io.nextflow:nf-httpfs 23.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...140 versions - Latest release: 4 months ago - 2 dependent packages - 1,980 stars on GitHub
Top 6.5% on repo1.maven.org
262 versions - Latest release: 4 months ago - 17 dependent packages - 15 dependent repositories - 1,982 stars on GitHub
io.nextflow:nextflow 23.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...262 versions - Latest release: 4 months ago - 17 dependent packages - 15 dependent repositories - 1,982 stars on GitHub
com.github.qurben:libnewicktree 1.0
It's a Newick tree parser2 versions - Latest release: almost 9 years ago - 2 dependent repositories - 1 stars on GitHub
io.nextflow:nxf-ignite 18.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...104 versions - Latest release: over 5 years ago - 1 dependent package - 1,982 stars on GitHub
io.nextflow:nf-amazon 20.10.0
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...14 versions - Latest release: over 3 years ago - 2 dependent packages - 2 dependent repositories - 1,982 stars on GitHub
io.nextflow:nf-commons 23.10.1
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...140 versions - Latest release: 4 months ago - 3 dependent packages - 1 dependent repositories - 1,980 stars on GitHub
io.nextflow:nxf-google 18.12.0-edge
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...1 version - Latest release: over 5 years ago - 1,982 stars on GitHub
io.nextflow:nf-console 20.10.0
A DSL modelled around the UNIX pipe concept, that simplifies writing parallel and scalable pipeli...44 versions - Latest release: over 3 years ago - 1 dependent package - 1,982 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 10 dependent packages - 1 dependent repositories - 948 stars on GitHub
de.charite.compbio:jannovar-core 0.41
jannovar-core is a library for the functional annotation of genomic variants28 versions - Latest release: over 1 year ago - 8 dependent packages - 12 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-hgvs 0.41
parsing and representing HGVS annotations27 versions - Latest release: over 1 year ago - 2 dependent packages - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-htsjdk 0.41
jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK28 versions - Latest release: over 1 year ago - 3 dependent packages - 10 dependent repositories - 50 stars on GitHub
Top 7.1% on repo1.maven.org
58 versions - Latest release: 2 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.biojava:biojava-structure 7.1.1
The protein structure modules of BioJava.58 versions - Latest release: 2 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.openscience.cdk:cdk 2.7.1
Modular library for Cheminformatics17 versions - Latest release: over 2 years ago - 6 dependent repositories - 397 stars on GitHub
org.bdgenomics.adam:adam-cli-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 5 months ago - 7 dependent packages - 6 dependent repositories - 948 stars on GitHub
Top 9.7% on repo1.maven.org
10 versions - Latest release: about 9 years ago - 5 dependent packages - 32 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core 0.16.0
A fast, scalable genome analysis system10 versions - Latest release: about 9 years ago - 5 dependent packages - 32 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 11 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 7 dependent packages - 2 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-apis_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 5 dependent packages - 5 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 4 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli 0.16.0
A fast, scalable genome analysis system10 versions - Latest release: about 9 years ago - 2 dependent packages - 9 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 5 months ago - 948 stars on GitHub
org.bdgenomics.adam:adam-apis_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 5 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 5 months ago - 5 dependent packages - 5 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 6 dependent packages - 948 stars on GitHub
Top 6.9% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 15 dependent packages - 14 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 15 dependent packages - 14 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis 0.16.0
A fast, scalable genome analysis system4 versions - Latest release: about 9 years ago - 3 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
edu.berkeley.cs.amplab.adam:adam-core 0.7.2
A fast, scalable genome analysis system2 versions - Latest release: about 10 years ago - 2 dependent packages - 1 dependent repositories - 944 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.33.0
A fast, scalable genome analysis system11 versions - Latest release: over 3 years ago - 2 dependent packages - 2 dependent repositories - 948 stars on GitHub
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