Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
repo1.maven.org "genomics" keyword
org.broadinstitute:gatk 4.5.0.0
Development on GATK 448 versions - Latest release: 5 months ago - 2 dependent packages - 3 dependent repositories - 1,396 stars on GitHub
org.broadinstitute:gatk-test-utils 4.5.0.0
Development on GATK 429 versions - Latest release: 5 months ago - 1,396 stars on GitHub
org.arvados:arvados-java-sdk 2.7.2
Arvados Java SDK13 versions - Latest release: about 1 month ago - 338 stars on GitHub
com.github.samtools:htsjdk_2.11 1.128
htsjdk1 version - Latest release: over 9 years ago - 254 stars on GitHub
Top 7.8% on repo1.maven.org
78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
com.github.samtools:htsjdk 4.1.0
A Java API for high-throughput sequencing data (HTS) formats78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
org.seqdoop:htsjdk 1.118
A Java API for high-throughput sequencing data (HTS) formats.1 version - Latest release: almost 10 years ago - 6 dependent packages - 10 dependent repositories - 259 stars on GitHub
org.monarchinitiative.phenol:phenol-io 2.1.1
phenol-io contains the generic I/O functionality for ontologies26 versions - Latest release: 28 days ago - 7 dependent packages - 26 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-core 2.1.1
phenol-core contains the core functionality for representing ontologies26 versions - Latest release: 28 days ago - 5 dependent packages - 24 dependent repositories - 19 stars on GitHub
edu.berkeley.cs.amplab.adam:adam-parent 0.7.2
A fast, scalable genome analysis system2 versions - Latest release: about 10 years ago - 944 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly_2.11 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
Top 9.5% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-codegen_2.10 0.23.0
A fast, scalable genome analysis system1 version - Latest release: over 6 years ago - 2 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 1 dependent repositories - 948 stars on GitHub
Top 6.8% on repo1.maven.org
14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
Top 9.3% on repo1.maven.org
8 versions - Latest release: 4 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 10 dependent packages - 1 dependent repositories - 948 stars on GitHub
Top 7.1% on repo1.maven.org
58 versions - Latest release: 2 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.biojava:biojava-structure 7.1.1
The protein structure modules of BioJava.58 versions - Latest release: 2 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.bdgenomics.adam:adam-cli-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 7 dependent packages - 6 dependent repositories - 948 stars on GitHub
Top 9.7% on repo1.maven.org
10 versions - Latest release: about 9 years ago - 5 dependent packages - 32 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core 0.16.0
A fast, scalable genome analysis system10 versions - Latest release: about 9 years ago - 5 dependent packages - 32 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 11 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 7 dependent packages - 2 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-apis_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 5 dependent packages - 5 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 4 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli 0.16.0
A fast, scalable genome analysis system10 versions - Latest release: about 9 years ago - 2 dependent packages - 9 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 948 stars on GitHub
org.bdgenomics.adam:adam-apis_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 5 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 5 dependent packages - 5 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 6 dependent packages - 948 stars on GitHub
Top 6.9% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 15 dependent packages - 14 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 15 dependent packages - 14 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-apis 0.16.0
A fast, scalable genome analysis system4 versions - Latest release: about 9 years ago - 3 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
edu.berkeley.cs.amplab.adam:adam-core 0.7.2
A fast, scalable genome analysis system2 versions - Latest release: about 10 years ago - 2 dependent packages - 1 dependent repositories - 944 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.33.0
A fast, scalable genome analysis system11 versions - Latest release: over 3 years ago - 2 dependent packages - 2 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-shade-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 2 dependent packages - 2 dependent repositories - 948 stars on GitHub
Top 9.9% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 14 dependent packages - 4 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 14 dependent packages - 4 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-parent_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 13 dependent packages - 3 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-shade-spark3_2.12 0.36.0
A fast, scalable genome analysis system5 versions - Latest release: over 2 years ago - 948 stars on GitHub
edu.berkeley.cs.amplab.adam:adam-format 0.7.2
A fast, scalable genome analysis system2 versions - Latest release: about 10 years ago - 1 dependent package - 1 dependent repositories - 944 stars on GitHub
org.bdgenomics.adam:adam-codegen_2.11 0.23.0
A fast, scalable genome analysis system1 version - Latest release: over 6 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-shade-spark2_2.11 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 3 dependent packages - 3 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 10 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution 0.16.0
A fast, scalable genome analysis system2 versions - Latest release: about 9 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 948 stars on GitHub
org.bdgenomics.adam:adam-parent 0.16.0
A fast, scalable genome analysis system10 versions - Latest release: about 9 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark2_2.12 0.33.0
A fast, scalable genome analysis system7 versions - Latest release: over 3 years ago - 4 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark2_2.10 0.23.0
A fast, scalable genome analysis system1 version - Latest release: over 6 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-cli-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 8 dependent packages - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
edu.berkeley.cs.amplab.adam:adam-cli 0.7.2
A fast, scalable genome analysis system2 versions - Latest release: about 10 years ago - 1 dependent repositories - 944 stars on GitHub
org.bdgenomics.adam:adam-format 0.12.0
A fast, scalable genome analysis system5 versions - Latest release: almost 10 years ago - 1 dependent package - 2 dependent repositories - 948 stars on GitHub
org.monarchinitiative.phenol:phenol-annotations 2.1.1
phenol-annotation contains the annotation functionality for ontologies21 versions - Latest release: 28 days ago - 1 dependent package - 12 dependent repositories - 19 stars on GitHub
io.projectglow:glow-spark3_2.12 2.0.0
An open-source toolkit for large-scale genomic analysis8 versions - Latest release: 2 months ago - 8 dependent packages - 1 dependent repositories - 225 stars on GitHub
org.genomicsdb:genomicsdb 1.5.3
Java API for GenomicsDB38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 77 stars on GitHub
com.jnpersson:discount_2.13 3.0.1
Analysis and counting of genomic k-mers for Apache Spark.4 versions - Latest release: over 1 year ago - 13 stars on GitHub
org.intermine:bio-source-reactome 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
com.jnpersson:discount_2.12 3.0.1
Analysis and counting of genomic k-mers for Apache Spark.6 versions - Latest release: over 1 year ago - 13 stars on GitHub
org.intermine:bio-source-update-data-sources 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-integrate 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 63 dependent packages - 241 stars on GitHub
org.intermine:bio-source-hgnc 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-core 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 62 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-populate-child-features 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-pathquery 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 2 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-create-chromosome-locations-and-lengths 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-ensembl-compara 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-api 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.intermine:intermine-model 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 4 dependent packages - 241 stars on GitHub
org.intermine:bio-source-ncbi-gene 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-kegg-orthologues 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-interpro-go 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-treefam 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-interpro 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-so 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-rgd-identifiers 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-attribute-indexes 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-update-publications 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-uniprot-keywords 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-psi-complexes 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-uniprot 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-gene-flanking-features 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-intermine-items-xml-file 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-go-annotation 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-webapp 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 4 dependent packages - 241 stars on GitHub
org.intermine:bio-model 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 50 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-create-location-overlap-index 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-mammalian-phenotype-ontology 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-testresources 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
Related Keywords
bioinformatics
167
java
157
python
132
api
76
biology
76
clojure
76
clojurescript
76
data-visualisation
76
data-visualization
76
data-warehouse
76
genetics
76
lgplv3
76
open-source
76
opensource
76
perl
76
postgresql
76
tomcat
76
tomcat8
76
webservices
76
scala
72
spark
67
avro
55
big-data
55
parquet
55
r
55
protein-modification
16
protein-data-bank
16
pdb
16
parser-library
16
protein-sequences
16
protein-structure
16
sequence-alignment
16
structural-bioinformatics
16
structure-alignment
16
bigdata
11
gdm-dataset-architecture
10
gdm
10
engine-configurations
10
engine
10
dataset
10
data-management-engine
10
data-analysis
10
cross-engine-execution
10
architecture
10
genometric-query-language
10
genomic-tertiary-analysis
10
gmql-script
10
ngs
9
machine-learning
7
human-phenotype-ontology
6
mammalian-phenotype-ontology
6
monarchinitiative
6
ontologies
6
phenotypes
6
phenomics
6
sequencing
5
dna
5
delta
5
gwas
5
population-genetics
5
regression
5
vcf
4
fgbio
3
analyzing-genomic-data
3
molecular-indexes
3
bam
3
cram
3
umi
3
sam
3
java-api
3
fasta
3
universal-automata
2
spelling-correction
2
search-engine
2
natural-language-processing
2
levenshtein-distance
2
levenshtein-automata
2
information-retrieval
2
fuzzy-search
2
finite-state-transducer
2
finite-state-automata
2
edit-distance
2
distance-metric
2
computer-science
2
approximate-string-matching
2
computational-biology
2
dictionary
2
data-science
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kmers
2
kmer-frequency-count
2
kmer-counting
2
gatk
2
genome
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science
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workflow
1
ruby
1
go
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gcp
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docker
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