bioconductor.org
2,564
Packages
15,290
Versions
3,231
Maintainers
399,054,485
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h5vc 2.44.0
Managing alignment tallies using a hdf5 backend7 versions - Latest release: 3 months ago - 36.5 thousand downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 33 dependent packages - 1.92 million downloads total - 1 maintainer
RBGL 1.86.0
An interface to the BOOST graph library6 versions - Latest release: 4 months ago - 33 dependent packages - 1.92 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
8 versions - Latest release: 4 months ago - 132 dependent packages - 4.92 million downloads total - 1 maintainer
GenomicAlignments 1.46.0
Representation and manipulation of short genomic alignments8 versions - Latest release: 4 months ago - 132 dependent packages - 4.92 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 12 dependent packages - 440 thousand downloads total - 1 maintainer
oligoClasses 1.72.0
Classes for high-throughput arrays supported by oligo and crlmm6 versions - Latest release: 4 months ago - 12 dependent packages - 440 thousand downloads total - 1 maintainer
Top 0.8% on bioconductor.org
8 versions - Latest release: 4 months ago - 129 dependent packages - 2.79 million downloads total - 1 maintainer
BSgenome 1.78.0
Software infrastructure for efficient representation of full genomes and their SNPs8 versions - Latest release: 4 months ago - 129 dependent packages - 2.79 million downloads total - 1 maintainer
Top 0.5% on bioconductor.org
11 versions - Latest release: 4 months ago - 146 dependent packages - 4.2 million downloads total - 330 stars on GitHub - 1 maintainer
DESeq2 1.50.2
Differential gene expression analysis based on the negative binomial distribution11 versions - Latest release: 4 months ago - 146 dependent packages - 4.2 million downloads total - 330 stars on GitHub - 1 maintainer
sigsquared 1.42.0
Gene signature generation for functionally validated signaling pathways6 versions - Latest release: 4 months ago - 19.1 thousand downloads total - 1 maintainer
Top 0.5% on bioconductor.org
8 versions - Latest release: 4 months ago - 111 dependent packages - 7.8 million downloads total - 1 maintainer
DelayedArray 0.36.0
A unified framework for working transparently with on-disk and in-memory array-like datasets8 versions - Latest release: 4 months ago - 111 dependent packages - 7.8 million downloads total - 1 maintainer
Top 0.6% on bioconductor.org
26 versions - Latest release: 2 months ago - 181 dependent packages - 4.27 million downloads total - 4 maintainers
edgeR 4.8.2
Empirical Analysis of Digital Gene Expression Data in R26 versions - Latest release: 2 months ago - 181 dependent packages - 4.27 million downloads total - 4 maintainers
Top 8.9% on bioconductor.org
6 versions - Latest release: 3 months ago - 42.1 thousand downloads total - 2 maintainers
CRImage 1.58.0
CRImage a package to classify cells and calculate tumour cellularity6 versions - Latest release: 3 months ago - 42.1 thousand downloads total - 2 maintainers
Top 0.1% on bioconductor.org
6 versions - Latest release: 4 months ago - 518 dependent packages - 11.2 million downloads total - 1 maintainer
Biobase 2.70.0
Biobase: Base functions for Bioconductor6 versions - Latest release: 4 months ago - 518 dependent packages - 11.2 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
12 versions - Latest release: about 2 months ago - 28 dependent packages - 2.26 million downloads total - 1 maintainer
ggtree 4.0.4
an R package for visualization of tree and annotation data12 versions - Latest release: about 2 months ago - 28 dependent packages - 2.26 million downloads total - 1 maintainer
Moonlight2R 1.8.1
Identify oncogenes and tumor suppressor genes from omics data7 versions - Latest release: about 1 month ago - 6.5 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 1.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 61 dependent packages - 1.93 million downloads total - 1 maintainer
Rgraphviz 2.54.0
Provides plotting capabilities for R graph objects6 versions - Latest release: 4 months ago - 61 dependent packages - 1.93 million downloads total - 1 maintainer
Top 0.3% on bioconductor.org
16 versions - Latest release: 4 months ago - 322 dependent packages - 6.96 million downloads total - 1 maintainer
limma 3.66.0
Linear Models for Microarray and Omics Data16 versions - Latest release: 4 months ago - 322 dependent packages - 6.96 million downloads total - 1 maintainer
Top 1.1% on bioconductor.org
10 versions - Latest release: 4 months ago - 377 dependent packages - 8.74 million downloads total - 63 stars on GitHub - 1 maintainer
BiocParallel 1.44.0
Bioconductor facilities for parallel evaluation10 versions - Latest release: 4 months ago - 377 dependent packages - 8.74 million downloads total - 63 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
9 versions - Latest release: 4 months ago - 740 dependent packages - 11.2 million downloads total - 1 maintainer
S4Vectors 0.48.0
Foundation of vector-like and list-like containers in Bioconductor9 versions - Latest release: 4 months ago - 740 dependent packages - 11.2 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
7 versions - Latest release: 4 months ago - 49 dependent packages - 1.39 million downloads total - 1 maintainer
GSEABase 1.72.0
Gene set enrichment data structures and methods7 versions - Latest release: 4 months ago - 49 dependent packages - 1.39 million downloads total - 1 maintainer
BaalChIP 1.36.0
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes6 versions - Latest release: 3 months ago - 21.3 thousand downloads total - 1 maintainer
scTGIF 1.24.0
Cell type annotation for unannotated single-cell RNA-Seq data6 versions - Latest release: 3 months ago - 1 dependent package - 14.3 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 15 dependent packages - 509 thousand downloads total - 4 stars on GitHub - 1 maintainer
seqLogo 1.76.0
Sequence logos for DNA sequence alignments6 versions - Latest release: 4 months ago - 15 dependent packages - 509 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 0.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 66 dependent packages - 4.16 million downloads total - 1 maintainer
genefilter 1.92.0
genefilter: methods for filtering genes from high-throughput experiments6 versions - Latest release: 4 months ago - 66 dependent packages - 4.16 million downloads total - 1 maintainer
seqArchR 1.14.0
Identify Different Architectures of Sequence Elements6 versions - Latest release: 3 months ago - 1 dependent package - 7.93 thousand downloads total - 1 stars on GitHub - 1 maintainer
BioCartaImage 1.8.1
BioCarta Pathway Images6 versions - Latest release: about 10 hours ago - 5.86 thousand downloads total - 11 stars on GitHub - 1 maintainer
Top 0.4% on bioconductor.org
7 versions - Latest release: 2 months ago - 251 dependent packages - 5.14 million downloads total - 1 maintainer
rtracklayer 1.70.1
R interface to genome annotation files and the UCSC genome browser7 versions - Latest release: 2 months ago - 251 dependent packages - 5.14 million downloads total - 1 maintainer
Top 7.0% on bioconductor.org
8 versions - Latest release: 4 months ago - 3 dependent packages - 3.12 million downloads total - 6 stars on GitHub - 1 maintainer
Rhdf5lib 1.32.0
hdf5 library as an R package8 versions - Latest release: 4 months ago - 3 dependent packages - 3.12 million downloads total - 6 stars on GitHub - 1 maintainer
SpatialFeatureExperiment 1.12.1
Integrating SpatialExperiment with Simple Features in sf13 versions - Latest release: 4 months ago - 1 dependent package - 17.1 thousand downloads total - 57 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 336 thousand downloads total - 485 stars on GitHub - 1 maintainer
maftools 2.26.0 💰
Summarize, Analyze and Visualize MAF Files6 versions - Latest release: 4 months ago - 9 dependent packages - 336 thousand downloads total - 485 stars on GitHub - 1 maintainer
MEIGOR 1.44.0
MEIGOR - MEtaheuristics for bIoinformatics Global Optimization8 versions - Latest release: 3 months ago - 2 dependent packages - 24.5 thousand downloads total - 1 maintainer
Top 1.5% on bioconductor.org
7 versions - Latest release: 3 months ago - 500 thousand downloads total - 384 stars on GitHub - 1 maintainer
EnhancedVolcano 1.28.2
Publication-ready volcano plots with enhanced colouring and labeling7 versions - Latest release: 3 months ago - 500 thousand downloads total - 384 stars on GitHub - 1 maintainer
Top 1.3% on bioconductor.org
7 versions - Latest release: 4 months ago - 36 dependent packages - 1.98 million downloads total - 1 maintainer
ShortRead 1.68.0
FASTQ input and manipulation7 versions - Latest release: 4 months ago - 36 dependent packages - 1.98 million downloads total - 1 maintainer
BioTIP 1.24.0
BioTIP: An R package for characterization of Biological Tipping-Point6 versions - Latest release: 3 months ago - 12.2 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
20 versions - Latest release: 3 months ago - 15 dependent packages - 2.23 million downloads total - 1 maintainer
enrichplot 1.30.4
Visualization of Functional Enrichment Result20 versions - Latest release: 3 months ago - 15 dependent packages - 2.23 million downloads total - 1 maintainer
Top 1.6% on bioconductor.org
13 versions - Latest release: 4 months ago - 27 dependent packages - 2.21 million downloads total - 1 maintainer
DOSE 4.4.0
Disease Ontology Semantic and Enrichment analysis13 versions - Latest release: 4 months ago - 27 dependent packages - 2.21 million downloads total - 1 maintainer
Top 3.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 9 dependent packages - 139 thousand downloads total - 1 maintainer
ropls 1.42.0
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data6 versions - Latest release: 4 months ago - 9 dependent packages - 139 thousand downloads total - 1 maintainer
Top 4.3% on bioconductor.org
8 versions - Latest release: 4 months ago - 27 dependent packages - 301 thousand downloads total - 24 stars on GitHub - 1 maintainer
basilisk 1.22.0
Freezing Python Dependencies Inside Bioconductor Packages8 versions - Latest release: 4 months ago - 27 dependent packages - 301 thousand downloads total - 24 stars on GitHub - 1 maintainer
Top 5.2% on bioconductor.org
9 versions - Latest release: 3 months ago - 3 dependent packages - 83.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
rols 3.6.1
An R interface to the Ontology Lookup Service9 versions - Latest release: 3 months ago - 3 dependent packages - 83.3 thousand downloads total - 11 stars on GitHub - 1 maintainer
DepInfeR 1.14.0
Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and...6 versions - Latest release: 3 months ago - 7.15 thousand downloads total - 0 stars on GitHub - 1 maintainer
easylift 1.8.0
An R package to perform genomic liftover5 versions - Latest release: 3 months ago - 5.94 thousand downloads total - 8 stars on GitHub - 1 maintainer
Top 7.2% on bioconductor.org
8 versions - Latest release: 3 months ago - 1 dependent package - 43.1 thousand downloads total - 1 maintainer
Rcpi 1.46.0
Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery8 versions - Latest release: 3 months ago - 1 dependent package - 43.1 thousand downloads total - 1 maintainer
Top 0.9% on bioconductor.org
7 versions - Latest release: 4 months ago - 48 dependent packages - 4.73 million downloads total - 1 maintainer
annotate 1.88.0
Annotation for microarrays7 versions - Latest release: 4 months ago - 48 dependent packages - 4.73 million downloads total - 1 maintainer
GOsummaries 2.37.0 removed
Word cloud summaries of GO enrichment analysis2 versions - Latest release: over 2 years ago - 19.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
hermes 1.14.0 💰
Preprocessing, analyzing, and reporting of RNA-seq data8 versions - Latest release: 4 months ago - 12.3 thousand downloads total - 12 stars on GitHub - 1 maintainer
Top 1.2% on bioconductor.org
19 versions - Latest release: 3 months ago - 59 dependent packages - 2.4 million downloads total - 1 maintainer
clusterProfiler 4.18.4
A universal enrichment tool for interpreting omics data19 versions - Latest release: 3 months ago - 59 dependent packages - 2.4 million downloads total - 1 maintainer
atSNP 1.26.0
Affinity test for identifying regulatory SNPs6 versions - Latest release: 3 months ago - 15.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
7 versions - Latest release: 3 months ago - 3 dependent packages - 76.3 thousand downloads total - 6 stars on GitHub - 1 maintainer
rpx 2.18.0
R Interface to the ProteomeXchange Repository7 versions - Latest release: 3 months ago - 3 dependent packages - 76.3 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 2.0% on bioconductor.org
6 versions - Latest release: 4 months ago - 6 dependent packages - 319 thousand downloads total - 1 maintainer
ROC 1.86.0
utilities for ROC, with microarray focus6 versions - Latest release: 4 months ago - 6 dependent packages - 319 thousand downloads total - 1 maintainer
Top 0.5% on bioconductor.org
9 versions - Latest release: 4 months ago - 183 dependent packages - 4.29 million downloads total - 1 maintainer
GenomicFeatures 1.62.0
Query the gene models of a given organism/assembly9 versions - Latest release: 4 months ago - 183 dependent packages - 4.29 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
11 versions - Latest release: 3 months ago - 69 dependent packages - 3.27 million downloads total - 72 stars on GitHub - 1 maintainer
rhdf5 2.54.1
R Interface to HDF511 versions - Latest release: 3 months ago - 69 dependent packages - 3.27 million downloads total - 72 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
9 versions - Latest release: 4 months ago - 96 dependent packages - 1.06 million downloads total - 1 maintainer
scater 1.38.0
Single-Cell Analysis Toolkit for Gene Expression Data in R9 versions - Latest release: 4 months ago - 96 dependent packages - 1.06 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
10 versions - Latest release: about 2 months ago - 38 dependent packages - 2.27 million downloads total - 345 stars on GitHub - 1 maintainer
fgsea 1.36.2
Fast Gene Set Enrichment Analysis10 versions - Latest release: about 2 months ago - 38 dependent packages - 2.27 million downloads total - 345 stars on GitHub - 1 maintainer
Top 0.2% on bioconductor.org
7 versions - Latest release: 4 months ago - 632 dependent packages - 7.7 million downloads total - 1 maintainer
SummarizedExperiment 1.40.0
A container (S4 class) for matrix-like assays7 versions - Latest release: 4 months ago - 632 dependent packages - 7.7 million downloads total - 1 maintainer
Top 1.0% on bioconductor.org
7 versions - Latest release: 4 months ago - 45 dependent packages - 5.44 million downloads total - 1 maintainer
MatrixGenerics 1.22.0
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects7 versions - Latest release: 4 months ago - 45 dependent packages - 5.44 million downloads total - 1 maintainer
anglemania 1.0.0
Feature Extraction for scRNA-seq Dataset Integration1 version - Latest release: 4 months ago - 1.01 thousand downloads total - 4 stars on GitHub - 1 maintainer
crisprBwa 1.14.0
BWA-based alignment of CRISPR gRNA spacer sequences6 versions - Latest release: 3 months ago - 1 dependent package - 8.52 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: about 1 month ago - 30 dependent packages - 1.17 million downloads total - 1 maintainer
vsn 3.78.1
Variance stabilization and calibration for microarray data7 versions - Latest release: about 1 month ago - 30 dependent packages - 1.17 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 47 dependent packages - 2.34 million downloads total - 105 stars on GitHub - 1 maintainer
GEOquery 2.78.0
Get data from NCBI Gene Expression Omnibus (GEO)6 versions - Latest release: 4 months ago - 47 dependent packages - 2.34 million downloads total - 105 stars on GitHub - 1 maintainer
Top 0.7% on bioconductor.org
8 versions - Latest release: 3 months ago - 101 dependent packages - 3.49 million downloads total - 1 maintainer
graph 1.88.1
graph: A package to handle graph data structures8 versions - Latest release: 3 months ago - 101 dependent packages - 3.49 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
7 versions - Latest release: 4 months ago - 729 dependent packages - 12 million downloads total - 1 maintainer
BiocGenerics 0.56.0
S4 generic functions used in Bioconductor7 versions - Latest release: 4 months ago - 729 dependent packages - 12 million downloads total - 1 maintainer
Top 1.4% on bioconductor.org
8 versions - Latest release: 4 months ago - 54 dependent packages - 1.73 million downloads total - 1 maintainer
HDF5Array 1.38.0
HDF5 datasets as array-like objects in R8 versions - Latest release: 4 months ago - 54 dependent packages - 1.73 million downloads total - 1 maintainer
Top 1.7% on bioconductor.org
7 versions - Latest release: 4 months ago - 43 dependent packages - 1.17 million downloads total - 3 maintainers
sva 3.58.0
Surrogate Variable Analysis7 versions - Latest release: 4 months ago - 43 dependent packages - 1.17 million downloads total - 3 maintainers
Top 0.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 74 dependent packages - 2.25 million downloads total - 1 maintainer
affy 1.88.0
Methods for Affymetrix Oligonucleotide Arrays6 versions - Latest release: 4 months ago - 74 dependent packages - 2.25 million downloads total - 1 maintainer
Summix 2.16.0
Summix2: A suite of methods to estimate, adjust, and leverage substructure in genetic summary data6 versions - Latest release: 4 months ago - 7.77 thousand downloads total - 1 maintainer
arrayMvout 1.68.0
multivariate outlier detection for expression array QA6 versions - Latest release: 3 months ago - 45.4 thousand downloads total - 1 maintainer
Top 1.4% on bioconductor.org
6 versions - Latest release: 4 months ago - 45 dependent packages - 2.39 million downloads total - 106 stars on GitHub - 2 maintainers
qvalue 2.42.0
Q-value estimation for false discovery rate control6 versions - Latest release: 4 months ago - 45 dependent packages - 2.39 million downloads total - 106 stars on GitHub - 2 maintainers
Top 1.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 31 dependent packages - 941 thousand downloads total - 64 stars on GitHub - 1 maintainer
minfi 1.56.0
Analyze Illumina Infinium DNA methylation arrays8 versions - Latest release: 4 months ago - 31 dependent packages - 941 thousand downloads total - 64 stars on GitHub - 1 maintainer
marr 1.20.0
Maximum rank reproducibility6 versions - Latest release: 4 months ago - 9.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 30 dependent packages - 591 thousand downloads total - 123 stars on GitHub - 1 maintainer
MSnbase 2.36.0
Base Functions and Classes for Mass Spectrometry and Proteomics8 versions - Latest release: 4 months ago - 30 dependent packages - 591 thousand downloads total - 123 stars on GitHub - 1 maintainer
Top 1.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 1 maintainer
lumi 2.62.0
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays6 versions - Latest release: 4 months ago - 10 dependent packages - 406 thousand downloads total - 1 maintainer
Top 1.0% on bioconductor.org
8 versions - Latest release: 4 months ago - 201 dependent packages - 2.02 million downloads total - 1 maintainer
SingleCellExperiment 1.32.0
S4 Classes for Single Cell Data8 versions - Latest release: 4 months ago - 201 dependent packages - 2.02 million downloads total - 1 maintainer
Top 0.1% on bioconductor.org
8 versions - Latest release: 4 months ago - 563 dependent packages - 11.7 million downloads total - 1 maintainer
IRanges 2.44.0
Foundation of integer range manipulation in Bioconductor8 versions - Latest release: 4 months ago - 563 dependent packages - 11.7 million downloads total - 1 maintainer
Top 0.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 36 dependent packages - 9.44 million downloads total - 1 maintainer
XVector 0.50.0
Foundation of external vector representation and manipulation in Bioconductor6 versions - Latest release: 4 months ago - 36 dependent packages - 9.44 million downloads total - 1 maintainer
ontoProc 2.4.0
processing of ontologies of anatomy, cell lines, and so on8 versions - Latest release: 4 months ago - 3 dependent packages - 25.3 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 0.2% on bioconductor.org
11 versions - Latest release: 4 months ago - 333 dependent packages - 9.38 million downloads total - 1 maintainer
Biostrings 2.78.0
Efficient manipulation of biological strings11 versions - Latest release: 4 months ago - 333 dependent packages - 9.38 million downloads total - 1 maintainer
Top 1.2% on bioconductor.org
6 versions - Latest release: 4 months ago - 37 dependent packages - 2.63 million downloads total - 1 maintainer
multtest 2.66.0
Resampling-based multiple hypothesis testing6 versions - Latest release: 4 months ago - 37 dependent packages - 2.63 million downloads total - 1 maintainer
MsFeatures 1.18.0
Functionality for Mass Spectrometry Features6 versions - Latest release: 4 months ago - 2 dependent packages - 143 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 0.9% on bioconductor.org
8 versions - Latest release: 4 months ago - 93 dependent packages - 2.08 million downloads total - 1 maintainer
VariantAnnotation 1.56.0
Annotation of Genetic Variants8 versions - Latest release: 4 months ago - 93 dependent packages - 2.08 million downloads total - 1 maintainer
Top 0.2% on bioconductor.org
21 versions - Latest release: 3 months ago - 342 dependent packages - 10.6 million downloads total - 1 maintainer
GenomeInfoDb 1.46.2
Utilities for manipulating chromosome names, including modifying them to follow a particular nami...21 versions - Latest release: 3 months ago - 342 dependent packages - 10.6 million downloads total - 1 maintainer
Top 1.8% on bioconductor.org
8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
Rsubread 2.24.0
Mapping, quantification and variant analysis of sequencing data8 versions - Latest release: 4 months ago - 14 dependent packages - 417 thousand downloads total - 2 maintainers
pmp 1.22.1
Peak Matrix Processing and signal batch correction for metabolomics datasets7 versions - Latest release: 4 months ago - 2 dependent packages - 16.9 thousand downloads total - 1 maintainer
fedup 1.18.0
Fisher's Test for Enrichment and Depletion of User-Defined Pathways6 versions - Latest release: 4 months ago - 8.77 thousand downloads total - 7 stars on GitHub - 1 maintainer
lineagespot 1.14.0
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencing6 versions - Latest release: 3 months ago - 7.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
13 versions - Latest release: 4 months ago - 15 dependent packages - 973 thousand downloads total - 185 stars on GitHub - 1 maintainer
xcms 4.8.0
LC-MS and GC-MS Data Analysis13 versions - Latest release: 4 months ago - 15 dependent packages - 973 thousand downloads total - 185 stars on GitHub - 1 maintainer
MetaboAnnotation 1.14.0
Utilities for Annotation of Metabolomics Data9 versions - Latest release: 4 months ago - 20.1 thousand downloads total - 17 stars on GitHub - 1 maintainer
tpSVG 1.6.0
Thin plate models to detect spatially variable genes5 versions - Latest release: 4 months ago - 4.86 thousand downloads total - 2 stars on GitHub - 1 maintainer
Top 0.8% on bioconductor.org
9 versions - Latest release: about 2 months ago - 51 dependent packages - 4.95 million downloads total - 1 maintainer
flowCore 2.22.1
flowCore: Basic structures for flow cytometry data9 versions - Latest release: about 2 months ago - 51 dependent packages - 4.95 million downloads total - 1 maintainer
DiscoRhythm 1.26.0
Interactive Workflow for Discovering Rhythmicity in Biological Data6 versions - Latest release: 4 months ago - 13.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
prebs 1.50.0
Probe region expression estimation for RNA-seq data for improved microarray comparability6 versions - Latest release: 4 months ago - 28 thousand downloads total - 1 maintainer
BAGS 2.50.0
A Bayesian Approach for Geneset Selection6 versions - Latest release: 4 months ago - 28.7 thousand downloads total - 1 maintainer
timeOmics 1.22.0
Time-Course Multi-Omics data integration6 versions - Latest release: 4 months ago - 1 dependent package - 12.4 thousand downloads total - 21 stars on GitHub - 1 maintainer
Top 2.8% on bioconductor.org
6 versions - Latest release: 4 months ago - 7 dependent packages - 201 thousand downloads total - 14 stars on GitHub - 1 maintainer
RUVSeq 1.44.0
Remove Unwanted Variation from RNA-Seq Data6 versions - Latest release: 4 months ago - 7 dependent packages - 201 thousand downloads total - 14 stars on GitHub - 1 maintainer
Top 9.9% on bioconductor.org
6 versions - Latest release: 4 months ago - 49.3 thousand downloads total - 86 stars on GitHub - 1 maintainer
scmap 1.32.0
A tool for unsupervised projection of single cell RNA-seq data6 versions - Latest release: 4 months ago - 49.3 thousand downloads total - 86 stars on GitHub - 1 maintainer
scPCA 1.24.0
Sparse Contrastive Principal Component Analysis6 versions - Latest release: 4 months ago - 14.4 thousand downloads total - 12 stars on GitHub - 1 maintainer
adSplit 1.80.0
Annotation-Driven Clustering6 versions - Latest release: 4 months ago - 49.2 thousand downloads total - 1 maintainer
Top 1.3% on bioconductor.org
6 versions - Latest release: 4 months ago - 44 dependent packages - 1.97 million downloads total - 1 maintainer
impute 1.84.0
impute: Imputation for microarray data6 versions - Latest release: 4 months ago - 44 dependent packages - 1.97 million downloads total - 1 maintainer
rWikiPathways 1.30.0
rWikiPathways - R client library for the WikiPathways API6 versions - Latest release: 3 months ago - 5 dependent packages - 77.6 thousand downloads total - 17 stars on GitHub - 1 maintainer
Top 0.1% on bioconductor.org
10 versions - Latest release: 3 months ago - 604 dependent packages - 9.29 million downloads total - 1 maintainer
GenomicRanges 1.62.1
Representation and manipulation of genomic intervals10 versions - Latest release: 3 months ago - 604 dependent packages - 9.29 million downloads total - 1 maintainer
biocmake 1.2.0
CMake for Bioconductor3 versions - Latest release: 3 months ago - 13.9 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 3.7% on bioconductor.org
6 versions - Latest release: 4 months ago - 2 dependent packages - 110 thousand downloads total - 1 maintainer
safe 3.50.0
Significance Analysis of Function and Expression6 versions - Latest release: 4 months ago - 2 dependent packages - 110 thousand downloads total - 1 maintainer
Rcollectl 1.10.0
Help use collectl with R in Linux, to measure resource consumption in R processes6 versions - Latest release: 3 months ago - 4.51 thousand downloads total - 3 stars on GitHub - 1 maintainer