Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
conda-forge.org "genomics" keyword
glow 1.0.1
Glow is an open-source toolkit for working with genomic data at biobank-scale and beyond. The too...2 versions - Latest release: about 3 years ago - 3 dependent repositories - 225 stars on GitHub
tskit 0.5.3
Toolkit for storing and processing large-scale genetic genealogies.19 versions - Latest release: over 1 year ago - 4 dependent packages - 8 dependent repositories - 114 stars on GitHub
galaxy-tool-util 22.1.5
Data intensive science for everyone.6 versions - Latest release: over 1 year ago - 1,077 stars on GitHub
galaxy-util 22.1.1
Data intensive science for everyone.2 versions - Latest release: over 1 year ago - 2 dependent packages - 1,077 stars on GitHub
oliver 1.4.11
An opinionated Cromwell orchestration manager.18 versions - Latest release: over 1 year ago - 36 stars on GitHub
mudata 0.2.0
Multimodal Data (.h5mu) implementation for Python3 versions - Latest release: almost 2 years ago - 2 dependent packages - 40 stars on GitHub
r-omicnavigator 1.11.5
Open-Source Software for Omic Data Analysis and Visualization2 versions - Latest release: almost 2 years ago - 18 stars on GitHub
Top 3.4% on conda-forge.org
10 versions - Latest release: over 1 year ago - 24 dependent packages - 507 dependent repositories - 3,492 stars on GitHub
biopython 1.71
Biopython is a collection of freely available Python tools for computational molecular biology10 versions - Latest release: over 1 year ago - 24 dependent packages - 507 dependent repositories - 3,492 stars on GitHub
galaxy-containers 22.1.1
Data intensive science for everyone.3 versions - Latest release: over 1 year ago - 1 dependent package - 1,077 stars on GitHub
goatools 1.2.3
Python library to handle Gene Ontology (GO) terms1 version - Latest release: almost 2 years ago - 3 dependent repositories - 612 stars on GitHub
r-clustassess 0.3.0
Tools for assessing clustering robustness1 version - Latest release: about 2 years ago - 17 stars on GitHub
msprime 1.2.0
Simulate genealogical trees and genomic sequence data using population genetic models16 versions - Latest release: almost 2 years ago - 3 dependent packages - 26 dependent repositories - 148 stars on GitHub
genozip 14.0.16
Genozip Genozip is a compressor for BAM / SAM / CRAM, FASTQ, VCF and <a href="https://www.genozi...133 versions - Latest release: over 1 year ago - 115 stars on GitHub
murphy 0.1
Generic tools to support parsing gtf/gff files and identifying overlapping genomic regions1 version - Latest release: over 1 year ago - 0 stars on GitHub
r-msigdbr 7.5.1
MSigDB gene sets for multiple organisms in a tidy data format6 versions - Latest release: about 2 years ago - 2 dependent repositories - 55 stars on GitHub
Related Keywords
bioinformatics
9
workflow
4
science
4
dna
4
ngs
4
sequencing
4
workflow-engine
3
python
3
usegalaxy
3
hacktoberfest
3
pipeline
3
machine-learning
2
phylogenetics
2
coalescent
1
genetics
1
msprime
1
simulation
1
trees
1
tskit
1
23andme
1
bam
1
bgzip
1
unsupervised-learning
1
single-cell
1
robustness
1
parameter-optimization
1
clustering
1
sidak
1
holm-sidak
1
goslim-terms
1
pathways
1
pathway-analysis
1
msigdb
1
gsea
1
gene-sets
1
enrichment-analysis
1
interval-tree
1
vcf
1
samtools
1
sam
1
gzip
1
gvf
1
fastq
1
fasta
1
cram
1
compression
1
bwa
1
mudata
1
data-analysis
1
anndata
1
workflow-execution
1
wdl-workflow
1
wdl
1
oliver
1
next-generation-sequencing
1
hpc
1
cromwell
1
bioinformatics-pipeline
1
tree-sequences
1
spark
1
regression
1
population-genetics
1
gwas
1
delta
1
gene-set-enrichment
1
gene-ontology
1
fisher-tests
1
fdr-benjamini
1
fdr
1
bioinfomatics
1
sequence-alignment
1
protein-structure
1
protein
1
biopython
1
r
1
opencpu
1
omics
1
scverse
1
muon
1
multimodal-omics-analysis
1
multi-omics
1