Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
conda-forge.org "protein-structure" keyword
Top 3.4% on conda-forge.org
10 versions - Latest release: over 1 year ago - 24 dependent packages - 507 dependent repositories - 3,492 stars on GitHub
biopython 1.71
Biopython is a collection of freely available Python tools for computational molecular biology10 versions - Latest release: over 1 year ago - 24 dependent packages - 507 dependent repositories - 3,492 stars on GitHub
gemmi 0.5.7
macromolecular crystallography library and utilities34 versions - Latest release: over 1 year ago - 5 dependent packages - 3 dependent repositories - 155 stars on GitHub
pyhdx 0.4.1
Derive ΔG for single residues from HDX-MS data7 versions - Latest release: about 2 years ago - 20 stars on GitHub
biopandas 0.4.1 💰
BioPandas is a library for working with Protein Databank Files(PDB) written in Python 2.7 and Pyt...11 versions - Latest release: almost 2 years ago - 3 dependent packages - 17 dependent repositories - 621 stars on GitHub
bio-embeddings 0.2.2 💰
Get protein embeddings from protein sequences1 version - Latest release: about 2 years ago - 347 stars on GitHub
rmf 1.3.1
This library provides support for the RMF file format for storing hierarchical molecular data (su...3 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 6 stars on GitHub
plip 2.2.2
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interacti...10 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 283 stars on GitHub
pypdb 2.2
A Python API for the RCSB Protein Data Bank (PDB)6 versions - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 237 stars on GitHub
tape_proteins 0.5
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised le...1 version - Latest release: about 2 years ago - 1 dependent package - 536 stars on GitHub
imp 2.17.0
IMP's broad goal is to contribute to a comprehensive structural characterization of biomolecules ...3 versions - Latest release: over 1 year ago - 2 dependent repositories - 62 stars on GitHub
Related Keywords
bioinformatics
3
protein-sequences
3
pdb
3
structural-biology
3
python
3
c-plus-plus
2
integrative-modeling
2
pdb-files
2
molecular-structures
2
biopython
1
pipeline
1
protein-prediction
1
semi-supervised-learning
1
pytorch
1
sequence-embeddings
1
language-modeling
1
deep-learning
1
docker
1
openbabel
1
plip
1
python-bindings
1
scientific-computing
1
dataset
1
benchmark
1
singularity
1
proteomics
1
blast
1
protein-data-bank
1
proteins
1
dna
1
genomics
1
phylogenetics
1
protein
1
sequence-alignment
1
ccp4
1
cif
1
crystallography
1
mmcif
1
mtz
1
hdx-ms
1
protein-dynamics
1
computational-biology
1
drug-discovery
1
mol2
1
molecule
1
molecules
1
pandas-dataframe
1
bio-embeddings
1
embedders
1
language-model
1
machine-learning
1