Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
conda-forge.org "microscopy" keyword
ome-types 0.3.2
native Python dataclasses for the OME data model8 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 32 stars on GitHub
pymmcore-plus 0.5.1
A convenience layer on pymmcore (micro-manager) providing improved python UX and event management11 versions - Latest release: over 1 year ago - 1 dependent package - 18 stars on GitHub
cytominer_database 0.3.4
Software tools such as CellProfiler can extract hundreds of measurements from millions of cells i...2 versions - Latest release: almost 2 years ago - 1 dependent package - 8 stars on GitHub
napari-aicsimageio 0.7.2
Multiple file format reading directly into napari using pure Python4 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 30 stars on GitHub
pyclesperanto-prototype 0.19.4
GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data19 versions - Latest release: over 1 year ago - 7 dependent packages - 126 stars on GitHub
pycroscopy 0.62.0
pycroscopy is a python package for analysis of nanoscale imaging data11 versions - Latest release: almost 2 years ago - 208 stars on GitHub
pycytominer 0.2.0
cytominer python package2 versions - Latest release: almost 2 years ago - 1 dependent package - 38 stars on GitHub
pycytominer.collate 0.2.0
cytominer python package1 version - Latest release: almost 2 years ago - 37 stars on GitHub
napari-czann-segment 0.0.16
Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.3 versions - Latest release: over 1 year ago - 7 stars on GitHub
cellfinder-core 0.3.0
Standalone cellfinder cell detection algorithm2 versions - Latest release: almost 2 years ago - 1 dependent package - 11 stars on GitHub
colicoords 0.1.5
Single-cell fluorescence microscopy data analysis3 versions - Latest release: over 4 years ago - 21 stars on GitHub
bg-atlasapi 1.0.2
A lightweight python module to interact with atlases for systems neuroscience2 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 68 stars on GitHub
nd2 0.5.1
Yet another nd2 (Nikon NIS Elements) file reader for python. With outputs to numpy, dask, and xa...11 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 34 stars on GitHub
napari-micromanager 0.0.1rc7
GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets2 versions - Latest release: almost 2 years ago - 46 stars on GitHub
aicsimageio 4.9.3
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python17 versions - Latest release: over 1 year ago - 7 dependent packages - 1 dependent repositories - 142 stars on GitHub
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.1 version - Latest release: over 1 year ago - 4 stars on GitHub
imagedataextractor 2.0.4
ImageDataExtractor 2.0 - a Python library for electron microscopy image quantification.1 version - Latest release: about 3 years ago - 5 stars on GitHub
psfmodels 0.3.2
Python bindings for scalar and vectorial models of the 3D microscope point spread function.1 version - Latest release: almost 2 years ago - 22 stars on GitHub
pyotf 0.0.3
python functions for simulating optical transfer functions2 versions - Latest release: over 1 year ago - 1 dependent package - 50 stars on GitHub
Related Keywords
python
7
napari
3
cytominer
2
image-processing
2
micro-manager
2
morphological-profiling
2
python3
2
imageio
2
deep-learning
2
electron-microscopy
2
segmentation
2
carpenter-lab
2
way-lab
2
fluorescence-microscopy-imaging
1
atlases
1
brain
1
neuroscience
1
registration
1
tensorflow
1
resnet
1
object-detection
1
keras
1
image-analysis
1
cellfinder
1
numpy
1
psf
1
quantitative-analysis
1
particle-segmentation
1
optical-character-recognition
1
vesicles
1
napari-plugin
1
cell-biology
1
xarray
1
scientific-formats
1
scientific-computing
1
image-metadata
1
dask
1
bio-formats
1
nis-elements
1
nikon
1
nd2
1
visualisation
1
metadata
1
ome
1
database
1
profiling
1
bioimage-analysis
1
gpu-acceleration
1
afm
1
atom
1
atomic-force-microscopy
1
fft
1
imaging
1
infrared
1
machine-learning
1
materials-science
1
raman
1
scanning
1
scanning-probe-microscopy
1
scanning-tunnelling-microscopy
1
signal-processing
1
spectroscopy
1
statistics
1
stem
1
stm
1
visualization
1
apeer
1
czmodel
1
image2image
1
onnxruntime
1
semantic-segmentation
1
cell-detection
1