Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

Top 3.6% on cran.r-project.org
Top 1.4% downloads on cran.r-project.org
Top 0.5% dependent packages on cran.r-project.org
Top 0.6% dependent repos on cran.r-project.org
Top 0.7% forks on cran.r-project.org

cran.r-project.org : vegan

Community Ecology Package

Registry - Source - Documentation - JSON
purl: pkg:cran/vegan
Keywords: ecological-modelling, ecology, ordination, r
License: GPL-2.0
Latest release: 22 days ago
First release: over 22 years ago
Dependent packages: 218
Dependent repositories: 563
Downloads: 100,467 last month
Stars: 428 on GitHub
Forks: 95 on GitHub
Docker dependents: 148
Docker downloads: 966,380
Total Commits: 4572
Committers: 36
Average commits per author: 127.0
Development Distribution Score (DDS): 0.479
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 13 days ago

goeveg 0.7.5
Functions for Community Data and Ordinations
14 versions - Latest release: 19 days ago - 2 dependent packages - 1 dependent repositories - 1.4 thousand downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.2% on cran.r-project.org
bipartite 2.20
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
55 versions - Latest release: 19 days ago - 15 dependent packages - 31 dependent repositories - 4.01 thousand downloads last month - 35 stars on GitHub - 1 maintainer
hagis 3.1.12
Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
11 versions - Latest release: 20 days ago - 5 stars on GitHub - 1 maintainer
microbial 0.0.21
Do 16s Data Analysis and Generate Figures
5 versions - Latest release: 21 days ago - 410 downloads last month - 1 maintainer
microeco 1.7.0
Microbial Community Ecology Data Analysis
35 versions - Latest release: 21 days ago - 3 dependent packages - 3 dependent repositories - 2.86 thousand downloads last month - 177 stars on GitHub - 1 maintainer
glmm.hp 0.1-3
Hierarchical Partitioning of Marginal R2 for Generalized Mixed-Effect Models
13 versions - Latest release: 22 days ago - 900 downloads last month - 4 stars on GitHub - 1 maintainer
provenance 4.3
Statistical Toolbox for Sedimentary Provenance Analysis
27 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1 maintainer
MiscMetabar 0.9.1
Miscellaneous Functions for Metabarcoding Analysis
3 versions - Latest release: about 1 month ago - 717 downloads last month - 7 stars on GitHub - 1 maintainer
collpcm 1.4
Collapsed Latent Position Cluster Model for Social Networks
5 versions - Latest release: about 1 month ago - 744 downloads last month - 1 maintainer
ecoregime 0.2.0
Analysis of Ecological Dynamic Regimes
3 versions - Latest release: about 2 months ago - 449 downloads last month - 1 stars on GitHub - 1 maintainer
Top 6.3% on cran.r-project.org
seriation 1.5.5
Infrastructure for Ordering Objects Using Seriation
49 versions - Latest release: about 2 months ago - 29 dependent packages - 78 dependent repositories - 39.2 thousand downloads last month - 74 stars on GitHub - 1 maintainer
codep 1.2-3
Multiscale Codependence Analysis
10 versions - Latest release: about 2 months ago - 681 downloads last month - 1 maintainer
supportR 1.3.0
Support Functions for Wrangling and Visualization
4 versions - Latest release: about 2 months ago - 385 downloads last month - 5 stars on GitHub - 1 maintainer
pctax 0.1.1
Professional Comprehensive Omics Data Analysis
2 versions - Latest release: about 2 months ago - 216 downloads last month - 4 stars on GitHub - 1 maintainer
dilp 1.1.0
Reconstruct Paleoclimate and Paleoecology with Leaf Physiognomy
2 versions - Latest release: 2 months ago - 243 downloads last month - 0 stars on GitHub - 1 maintainer
BioTIMEr 0.2.2 removed
Tools to Use and Explore the 'BioTIME' Database
1 version - Latest release: 2 months ago - 3 downloads last month - 0 stars on GitHub - 1 maintainer
RaceID 0.3.5
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from S...
27 versions - Latest release: 2 months ago - 1 dependent repositories - 636 downloads last month - 1 maintainer
ReporterScore 0.1.4
Generalized Reporter Score-Based Enrichment Analysis for Omics Data
3 versions - Latest release: 2 months ago - 198 downloads last month - 35 stars on GitHub - 1 maintainer
MetaNet 0.1.2
Network Analysis for Omics Data
2 versions - Latest release: 2 months ago - 2 dependent packages - 1 stars on GitHub - 1 maintainer
mobsim 0.3.1
Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes
3 versions - Latest release: 2 months ago - 244 downloads last month - 19 stars on GitHub - 1 maintainer
vegan3d 1.3-0
Static and Dynamic 3D and Editable Interactive Plots for the 'vegan' Package
9 versions - Latest release: 3 months ago - 2 dependent packages - 2 dependent repositories - 1 thousand downloads last month - 19 stars on GitHub - 1 maintainer
pcutils 0.2.5
Some Useful Functions for Statistics and Visualization
5 versions - Latest release: 3 months ago - 4 dependent packages - 394 downloads last month - 7 stars on GitHub - 1 maintainer
Top 9.7% on cran.r-project.org
poppr 2.9.6 💰
Genetic Analysis of Populations with Mixed Reproduction
42 versions - Latest release: 3 months ago - 7 dependent packages - 13 dependent repositories - 7.42 thousand downloads last month - 67 stars on GitHub - 1 maintainer
Top 5.0% on cran.r-project.org
geomorph 4.0.7
Geometric Morphometric Analyses of 2D and 3D Landmark Data
44 versions - Latest release: 3 months ago - 11 dependent packages - 17 dependent repositories - 2.67 thousand downloads last month - 73 stars on GitHub - 1 maintainer
neonPlantEcology 1.5.0
Process NEON Plant Data for Ecological Analysis
4 versions - Latest release: 3 months ago - 256 downloads last month - 6 stars on GitHub - 1 maintainer
NADA2 1.1.6
Data Analysis for Censored Environmental Data
10 versions - Latest release: 3 months ago - 1 dependent repositories - 443 downloads last month - 13 stars on GitHub - 1 maintainer
cocorresp 0.4-4
Co-Correspondence Analysis Methods
13 versions - Latest release: 3 months ago - 653 downloads last month - 4 stars on GitHub - 1 maintainer
mFD 1.0.7
Compute and Illustrate the Multiple Facets of Functional Diversity
8 versions - Latest release: 3 months ago - 489 downloads last month - 19 stars on GitHub - 1 maintainer
GABB 0.3.8
Facilitation of Data Preparation and Plotting Procedures for RDA and PCA Analyses
8 versions - Latest release: 3 months ago - 335 downloads last month - 1 maintainer
RPANDA 2.3
Phylogenetic ANalyses of DiversificAtion
14 versions - Latest release: 3 months ago - 2 dependent packages - 3 dependent repositories - 512 downloads last month - 22 stars on GitHub - 1 maintainer
Platypus 3.5.0 removed
Single-Cell Immune Repertoire and Gene Expression Analysis
5 versions - Latest release: 3 months ago - 312 downloads last month - 1 maintainer
metacoder 0.3.7
Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data
13 versions - Latest release: 4 months ago - 2 dependent packages - 4 dependent repositories - 1.13 thousand downloads last month - 2 stars on GitHub - 1 maintainer
BAT 2.9.6
Biodiversity Assessment Tools
40 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 1.31 thousand downloads last month - 1 maintainer
surveyvoi 1.0.6
Survey Value of Information
5 versions - Latest release: 4 months ago - 777 downloads last month - 2 stars on GitHub - 1 maintainer
naturaList 0.5.2
Classify Occurrences by Confidence Levels in the Species ID
5 versions - Latest release: 4 months ago - 300 downloads last month - 0 stars on GitHub - 1 maintainer
visvow 1.3.11
Visible Vowels: Visualization of Vowel Variation
26 versions - Latest release: 4 months ago - 407 downloads last month - 1 maintainer
enveomics.R 1.9.1
Various Utilities for Microbial Genomics and Metagenomics
23 versions - Latest release: 4 months ago - 462 downloads last month - 1 maintainer
vegdata 0.9.12
Access Vegetation Databases and Treat Taxonomy
45 versions - Latest release: 4 months ago - 4 dependent packages - 5 dependent repositories - 673 downloads last month - 1 maintainer
raptr 1.0.1
Representative and Adequate Prioritization Toolkit in R
13 versions - Latest release: 4 months ago - 923 downloads last month - 7 stars on GitHub - 1 maintainer
mixKernel 0.9-1
Omics Data Integration Using Kernel Methods
10 versions - Latest release: 4 months ago - 1 dependent repositories - 305 downloads last month - 1 maintainer
spmoran 0.2.3
Fast Spatial Regression using Moran Eigenvectors
27 versions - Latest release: 4 months ago - 1 dependent repositories - 701 downloads last month - 1 maintainer
GCalignR 1.0.6
Simple Peak Alignment for Gas-Chromatography Data
7 versions - Latest release: 4 months ago - 363 downloads last month - 4 stars on GitHub - 1 maintainer
asbio 1.9-7 removed
A Collection of Statistical Tools for Biologists
52 versions - Latest release: 5 months ago - 2 dependent packages - 1 dependent repositories - 1.77 thousand downloads last month - 1 maintainer
sads 0.6.3
Maximum Likelihood Models for Species Abundance Distributions
11 versions - Latest release: 5 months ago - 1 dependent package - 6 dependent repositories - 591 downloads last month - 22 stars on GitHub - 1 maintainer
ggordiplots 0.4.3
Make 'ggplot2' Versions of Vegan's Ordiplots
2 versions - Latest release: 5 months ago - 788 downloads last month - 5 stars on GitHub - 1 maintainer
Top 8.9% on cran.r-project.org
TraMineR 2.2-9
Trajectory Miner: a Sequence Analysis Toolkit
48 versions - Latest release: 5 months ago - 12 dependent packages - 13 dependent repositories - 2.39 thousand downloads last month - 1 maintainer
yaImpute 1.0-34
Nearest Neighbor Observation Imputation and Evaluation Tools
34 versions - Latest release: 6 months ago - 12 dependent packages - 44 dependent repositories - 3.77 thousand downloads last month - 2 stars on GitHub - 1 maintainer
biplotbootGUI 1.3
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
4 versions - Latest release: 6 months ago - 381 downloads last month - 1 maintainer
isopam 1.3.0 removed
Clustering of Sites with Species Data
12 versions - Latest release: 6 months ago - 1 dependent repositories - 326 downloads last month - 1 maintainer
Top 6.6% on cran.r-project.org
vcfR 1.15.0
Manipulate and Visualize VCF Data
16 versions - Latest release: 6 months ago - 25 dependent packages - 55 dependent repositories - 7.22 thousand downloads last month - 233 stars on GitHub - 1 maintainer
evolqg 0.3-4
Evolutionary Quantitative Genetics
17 versions - Latest release: 6 months ago - 2 dependent packages - 2 dependent repositories - 400 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.9% on cran.r-project.org
FD 1.0-12.3
Measuring Functional Diversity (FD) from Multiple Traits, and Other Tools for Functional Ecology
10 versions - Latest release: 6 months ago - 14 dependent packages - 28 dependent repositories - 3.98 thousand downloads last month - 1 maintainer
ulrb 0.1.3
Unsupervised Learning Based Definition of Microbial Rare Biosphere
1 version - Latest release: 7 months ago - 151 downloads last month - 2 stars on GitHub - 1 maintainer
ausplotsR 2.0.5
TERN AusPlots Australian Ecosystem Monitoring Data
13 versions - Latest release: 7 months ago - 1 dependent repositories - 449 downloads last month - 1 maintainer
epiphy 0.5.0
Analysis of Plant Disease Epidemics
2 versions - Latest release: 7 months ago - 1 dependent package - 264 downloads last month - 15 stars on GitHub - 1 maintainer
QFASA 1.2.0
Quantitative Fatty Acid Signature Analysis
8 versions - Latest release: 7 months ago - 344 downloads last month - 1 maintainer
dartR.spatial 0.78
Applying Landscape Genomic Methods on 'SNP' and 'Silicodart' Data
2 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 334 downloads last month - 29 stars on GitHub - 1 maintainer
Momocs 1.4.1
Morphometrics using R
19 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 827 downloads last month - 49 stars on GitHub - 1 maintainer
Xplortext 1.5.3
Statistical Analysis of Textual Data
10 versions - Latest release: 7 months ago - 295 downloads last month - 1 maintainer
EcoIndR 2.0
Ecological Indicators
10 versions - Latest release: 7 months ago - 320 downloads last month - 1 maintainer
DIscBIO 1.2.2
A User-Friendly Pipeline for Biomarker Discovery in Single-Cell Transcriptomics
6 versions - Latest release: 7 months ago - 10 stars on GitHub - 1 maintainer
ecotraj 0.1.1
Ecological Trajectory Analysis
3 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 677 downloads last month - 3 stars on GitHub - 1 maintainer
AlleleShift 1.1-2 removed
Predict and Visualize Population-Level Changes in Allele Frequencies in Response to Climate Change
6 versions - Latest release: 7 months ago - 83 downloads last month - 1 maintainer
rioja 1.0-6
Analysis of Quaternary Science Data
25 versions - Latest release: 8 months ago - 3 dependent packages - 9 dependent repositories - 1.07 thousand downloads last month - 10 stars on GitHub - 1 maintainer
FCPS 1.3.4
Fundamental Clustering Problems Suite
12 versions - Latest release: 8 months ago - 2 dependent packages - 2 dependent repositories - 948 downloads last month - 1 maintainer
Top 10.0% on cran.r-project.org
adespatial 0.3-23 removed
Multivariate Multiscale Spatial Analysis
25 versions - Latest release: 8 months ago - 5 dependent packages - 12 dependent repositories - 2.17 thousand downloads last month - 29 stars on GitHub - 1 maintainer
Top 7.9% on cran.r-project.org
ecospat 4.0.0
Spatial Ecology Miscellaneous Methods
17 versions - Latest release: 8 months ago - 8 dependent packages - 12 dependent repositories - 2.16 thousand downloads last month - 1 maintainer
ProjectionBasedClustering 1.2.1
Projection Based Clustering
15 versions - Latest release: 8 months ago - 4 dependent packages - 1 dependent repositories - 551 downloads last month - 1 maintainer
SQMtools 1.6.3
Analyze Results Generated by the 'SqueezeMeta' Pipeline
2 versions - Latest release: 9 months ago - 363 downloads last month - 343 stars on GitHub - 1 maintainer
GUniFrac 1.8
Generalized UniFrac Distances, Distance-Based Multivariate Methods and Feature-Based Univariate M...
9 versions - Latest release: 9 months ago - 6 dependent packages - 17 dependent repositories - 1.72 thousand downloads last month - 1 maintainer
biosampleR 1.0.4
Biodiversity Index Calculation and Bootstrap Confidence Interval Estimation
1 version - Latest release: 9 months ago - 248 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.2% on cran.r-project.org
tmap 3.3-4
Thematic Maps
29 versions - Latest release: 9 months ago - 59 dependent packages - 158 dependent repositories - 21.5 thousand downloads last month - 838 stars on GitHub - 1 maintainer
LDM 6.0.1
Testing Hypotheses About the Microbiome using the Linear Decomposition Model
2 versions - Latest release: 9 months ago - 248 downloads last month - 23 stars on GitHub - 1 maintainer
otuSummary 0.1.2
Summarizing OTU Table Regarding the Composition, Abundance and Beta Diversity of Abundant and Rar...
3 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 370 downloads last month - 0 stars on GitHub - 1 maintainer
TOmicsVis 2.0.0
Transcriptome Visualization Process Scheme
3 versions - Latest release: 9 months ago - 247 downloads last month - 56 stars on GitHub - 1 maintainer
forams 2.0-6
Foraminifera and Community Ecology Analyses
9 versions - Latest release: 10 months ago - 329 downloads last month - 1 maintainer
SoundShape 1.3.0
Sound Waves Onto Morphometric Data
5 versions - Latest release: 10 months ago - 218 downloads last month - 9 stars on GitHub - 1 maintainer
patternize 0.0.5
Quantification of Color Pattern Variation
5 versions - Latest release: 10 months ago - 324 downloads last month - 28 stars on GitHub - 1 maintainer
nodiv 1.4.2
Compares the Distribution of Sister Clades Through a Phylogeny
21 versions - Latest release: 10 months ago - 370 downloads last month - 2 stars on GitHub - 1 maintainer
untb 1.7-7
Ecological Drift under the UNTB
21 versions - Latest release: 10 months ago - 2 dependent packages - 3 dependent repositories - 466 downloads last month - 4 stars on GitHub - 1 maintainer
restoptr 1.0.6
Ecological Restoration Planning
7 versions - Latest release: 10 months ago - 694 downloads last month - 11 stars on GitHub - 1 maintainer
chemodiv 0.3.0
Analysing Chemodiversity of Phytochemical Data
4 versions - Latest release: 10 months ago - 323 downloads last month - 2 stars on GitHub - 1 maintainer
phyloregion 1.0.8
Biogeographic Regionalization and Macroecology
4 versions - Latest release: 10 months ago - 2 dependent packages - 3 dependent repositories - 401 downloads last month - 17 stars on GitHub - 1 maintainer
ecan 0.2.1 removed
Ecological Analysis and Visualization
2 versions - Latest release: 11 months ago - 541 downloads last month - 0 stars on GitHub - 1 maintainer
Rarefy 1.1.1 removed
Rarefaction Methods
3 versions - Latest release: 11 months ago - 457 downloads last month - 1 maintainer
dartR 2.9.7
Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment...
17 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 1.49 thousand downloads last month - 29 stars on GitHub - 1 maintainer
RRphylo 2.8.0
Phylogenetic Ridge Regression Methods for Comparative Studies
14 versions - Latest release: about 1 year ago - 1 dependent repositories - 496 downloads last month - 1 maintainer
canaper 1.0.1
Categorical Analysis of Neo- And Paleo-Endemism
2 versions - Latest release: about 1 year ago - 240 downloads last month - 6 stars on GitHub - 1 maintainer
cml 0.2.2
Conditional Manifold Learning
6 versions - Latest release: about 1 year ago - 270 downloads last month - 1 maintainer
AICcPermanova 0.0.2
Model Selection of PERMANOVA Models Using AICc
2 versions - Latest release: about 1 year ago - 458 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.3% on cran.r-project.org
labdsv 2.1-0
Ordination and Multivariate Analysis for Ecology
13 versions - Latest release: about 1 year ago - 9 dependent packages - 19 dependent repositories - 2.9 thousand downloads last month - 1 maintainer
vegtable 0.1.8
Handling Vegetation Data Sets
9 versions - Latest release: about 1 year ago - 2 dependent repositories - 279 downloads last month - 5 stars on GitHub - 1 maintainer
mcMST 1.1.1
A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem
3 versions - Latest release: about 1 year ago - 224 downloads last month - 3 stars on GitHub - 1 maintainer
palaeoSig 2.1-3 removed
Significance Tests for Palaeoenvironmental Reconstructions
7 versions - Latest release: about 1 year ago - 1 dependent repositories - 186 downloads last month - 3 stars on GitHub - 1 maintainer
Top 2.8% on cran.r-project.org
mirt 1.38.1
Multidimensional Item Response Theory
68 versions - Latest release: over 1 year ago - 53 dependent packages - 52 dependent repositories - 6.41 thousand downloads last month - 198 stars on GitHub - 1 maintainer
MiRKAT 1.2.3
Microbiome Regression-Based Kernel Association Tests
11 versions - Latest release: over 1 year ago - 3 dependent repositories - 403 downloads last month - 1 maintainer
shipunov 1.17.1
Miscellaneous Functions from Alexey Shipunov
19 versions - Latest release: over 1 year ago - 436 downloads last month - 1 maintainer
Arothron 2.0.5
Geometric Morphometric Methods and Virtual Anthropology Tools
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 449 downloads last month - 1 maintainer
graph4lg 1.8.0 removed
Build Graphs for Landscape Genetics Analysis
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 461 downloads last month - 1 maintainer
Top 6.8% on cran.r-project.org
adegenet 2.1.10
Exploratory Analysis of Genetic and Genomic Data
43 versions - Latest release: over 1 year ago - 29 dependent packages - 83 dependent repositories - 12.9 thousand downloads last month - 162 stars on GitHub - 1 maintainer