Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
hackage.haskell.org "bioinformatics" keyword
NGLess 1.5.0
NGLess implements a domain-specific language for processing next generation data, particularly me...5 versions - Latest release: over 1 year ago - 294 downloads total - 143 stars on GitHub - 1 maintainer
memexml 0.0.3
Haskell cabal libary for parsing Meme motif finder xml output3 versions - Latest release: over 8 years ago - 2.62 thousand downloads total - 3 stars on GitHub - 1 maintainer
sequence-formats 1.7.1
Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file forma...25 versions - Latest release: about 1 year ago - 1 dependent package - 10 dependent repositories - 6.07 thousand downloads total - 1 stars on GitHub - 1 maintainer
MutationOrder 0.0.1.0
Determine the most likely order in which single nucleotide mutations happened between two RNA seq...3 versions - Latest release: over 6 years ago - 2.46 thousand downloads total - 0 stars on GitHub - 1 maintainer
hs-samtools 0.9.0.0
7 versions - Latest release: 6 months ago - 1 dependent repositories - 116 downloads total - 0 stars on GitHub - 1 maintainerViennaRNA-extras 0.0.0.1
Extra functionality on top of the ViennaRNA bindings. Please note the special license of the Vien...1 version - Latest release: over 6 years ago - 2 dependent repositories - 1.07 thousand downloads total - 1 stars on GitHub - 1 maintainer
BiobaseEnsembl 0.2.0.1
This library contains high through put sequencing and Ensembl-related functionality: - Datastruct...3 versions - Latest release: over 4 years ago - 8 dependent repositories - 1.66 thousand downloads total - 2 stars on GitHub - 1 maintainer
integreat 0.2.2.1
Integrate difference data sources and optionally perform differential integration.1 version - Latest release: almost 6 years ago - 1 dependent repositories - 804 downloads total - 1 stars on GitHub - 1 maintainer
StockholmAlignment 1.3.0
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent ...10 versions - Latest release: over 4 years ago - 2 dependent repositories - 6.86 thousand downloads total - 1 maintainer
BiobaseFasta 0.4.0.1
Stream-based handling of FASTA files. The user selects a window size, the library then handles th...10 versions - Latest release: almost 3 years ago - 8 dependent repositories - 7.28 thousand downloads total - 4 stars on GitHub - 1 maintainer
differential 0.2.0.1
Finds out whether an entity comes from different distributions (statuses).5 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 1.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
hierarchical-spectral-clustering 0.5.0.1
Hierarchical spectral clustering of a graph.15 versions - Latest release: over 4 years ago - 2 dependent packages - 1 dependent repositories - 5.62 thousand downloads total - 7 stars on GitHub - 1 maintainer
AlignmentAlgorithms 0.1.0.0
generalized Algebraic Dynamic Programming A selection of (sequence) alignment algorithms. Both t...5 versions - Latest release: about 7 years ago - 1 dependent repositories - 4.52 thousand downloads total - 1 stars on GitHub - 1 maintainer
Gene-CluEDO 0.0.0.2
Gene Cluster Evolution Determined Order Expansion of Gene Clusters and the Shortest Hamiltonian ...2 versions - Latest release: over 6 years ago - 1.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
ViennaRNA-bindings 0.233.2.0
Bindings to the ViennaRNA package, version 2.3.3. Only a partial set of bindings is provided. If...10 versions - Latest release: over 6 years ago - 1 dependent repositories - 9.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
ClustalParser 1.3.0
Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign Clustal too...14 versions - Latest release: over 4 years ago - 23 dependent repositories - 11.2 thousand downloads total - 1 maintainer
hyraxAbif 0.2.4.5
This library provides functionality for parsing, modifying, writing and generating ABIF files A...16 versions - Latest release: 5 months ago - 2 dependent packages - 5.65 thousand downloads total - 10 stars on GitHub - 1 maintainer
BiobaseTypes 0.2.1.0
Types used in a number of bioinformatics libraries. linear indices energies biostring wrappers11 versions - Latest release: almost 3 years ago - 12 dependent repositories - 8.28 thousand downloads total - 3 stars on GitHub - 1 maintainer
biophd 0.0.8
Library for reading phd sequence files9 versions - Latest release: almost 9 years ago - 97 dependent repositories - 7.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
hemokit 0.6.6
This package allows reading raw data from the Emotiv EPOC EEG devices. It is inspired and based ...12 versions - Latest release: over 8 years ago - 1 dependent repositories - 8.43 thousand downloads total - 31 stars on GitHub - 2 maintainers
phybin 0.2.11
This package provides a libary and executable for dealing with Newick tree files. It can do simp...9 versions - Latest release: almost 11 years ago - 1 dependent repositories - 6.75 thousand downloads total - 1 maintainer
biohazard 1.1.1
20 versions - Latest release: over 5 years ago - 6 dependent repositories - 12.2 thousand downloads total - 1 maintainerRNAlien 1.7.0
14 versions - Latest release: over 4 years ago - 7 dependent repositories - 9.61 thousand downloads total - 1 maintainerbiostockholm 0.3.4
10 versions - Latest release: almost 9 years ago - 7.65 thousand downloads total - 1 maintainerBiobaseTurner 0.3.1.1
13 versions - Latest release: about 11 years ago - 2 dependent repositories - 12 thousand downloads total - 1 maintainerBiobaseVienna 0.3.0.0
11 versions - Latest release: about 11 years ago - 1 dependent repositories - 10.5 thousand downloads total - 1 maintainerdiversity 0.8.1.0
Calculates the diversity of each position in a fasta file.26 versions - Latest release: over 6 years ago - 2 dependent packages - 18 dependent repositories - 18.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
BlastHTTP 1.4.2
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and retur...9 versions - Latest release: almost 3 years ago - 134 dependent repositories - 7.53 thousand downloads total - 5 stars on GitHub - 1 maintainer
modify-fasta 0.8.3.0
Modify fasta (and CLIP) files in several ways.13 versions - Latest release: about 6 years ago - 17 dependent repositories - 7.61 thousand downloads total - 2 stars on GitHub - 1 maintainer
seqloc-datafiles 0.4.2
10 versions - Latest release: about 9 years ago - 6.83 thousand downloads total - 1 maintainerFormalGrammars 0.4.0.0
generalized Algebraic Dynamic Programming Context-free grammars in formal language theory are se...10 versions - Latest release: over 4 years ago - 4 dependent repositories - 8.49 thousand downloads total - 5 stars on GitHub - 1 maintainer
seqloc 0.6.1
14 versions - Latest release: over 9 years ago - 133 dependent repositories - 11.1 thousand downloads total - 1 maintainerBiobaseInfernal 0.8.1.0
Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, v...16 versions - Latest release: about 7 years ago - 1 dependent repositories - 15.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
too-many-cells 3.0.1.0
Cluster single cells and analyze cell clade relationships with colorful visualizations.29 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 10.6 thousand downloads total - 99 stars on GitHub - 1 maintainer
samtools 0.2.4
15 versions - Latest release: over 9 years ago - 1 dependent repositories - 11.1 thousand downloads total - 1 maintainerViennaRNAParser 1.3.3
Currently contains parsers and datatypes for: RNAalifold, RNAcode, RNAdistance, RNAcofold, RNAfol...15 versions - Latest release: over 6 years ago - 24 dependent repositories - 12.3 thousand downloads total - 1 maintainer
flower 0.7.2
13 versions - Latest release: over 10 years ago - 9.56 thousand downloads total - 1 maintainerbiosff 0.3.7
9 versions - Latest release: over 10 years ago - 93 dependent repositories - 8.96 thousand downloads total - 1 maintainerbirch-beer 0.4.2.1
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.25 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 9.68 thousand downloads total - 6 stars on GitHub - 1 maintainer
ADPfusion 0.6.0.0
generalized Algebraic Dynamic Programming ADPfusion combines stream-fusion (using the stream int...20 versions - Latest release: over 4 years ago - 8 dependent repositories - 19.3 thousand downloads total - 26 stars on GitHub - 1 maintainer
bio 0.5.3
This is a collection of data structures and algorithms useful for building bioinformatics-related...16 versions - Latest release: almost 11 years ago - 2 dependent repositories - 14.1 thousand downloads total - 2 maintainers
GrammarProducts 0.2.0.0
generalized Algebraic Dynamic Programming An algebra of linear and context-free grammars. This ...9 versions - Latest release: over 4 years ago - 1 dependent repositories - 7.32 thousand downloads total - 2 stars on GitHub - 1 maintainer
mmtf 0.1.3.1
Haskell implementation of MMTF biological structure format.6 versions - Latest release: about 5 years ago - 3.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
heatitup 0.5.4.0
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spac...2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 1.13 thousand downloads total - 2 stars on GitHub - 1 maintainer
BioHMM 1.2.0
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models...20 versions - Latest release: almost 7 years ago - 14.9 thousand downloads total - 1 maintainer
BiobaseXNA 0.11.1.1
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well ...34 versions - Latest release: almost 3 years ago - 12 dependent repositories - 31 thousand downloads total - 7 stars on GitHub - 1 maintainer
rank-product 0.2.2.0
Collects the functions pertaining to finding the rank product of a data set as well as the associ...10 versions - Latest release: over 5 years ago - 10 dependent repositories - 5 thousand downloads total - 0 stars on GitHub - 1 maintainer
blosum 0.1.1.4
BLOSUM matrix generator with the addition of any generic characters for special amino acids4 versions - Latest release: over 7 years ago - 16 dependent repositories - 3.21 thousand downloads total - 1 stars on GitHub - 1 maintainer
BiobaseNewick 0.0.0.2
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled w...2 versions - Latest release: almost 7 years ago - 9 dependent repositories - 2.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
ForestStructures 0.0.1.1
This library provides both static and dynamic tree and forest structures. Once a tree structure i...4 versions - Latest release: 11 months ago - 15 dependent repositories - 3.24 thousand downloads total - 3 stars on GitHub - 1 maintainer
BiobaseBlast 0.3.3.0
This library contains BLAST-related functionality: Parser for tabular NCBI BLAST+ output Parser...6 versions - Latest release: almost 3 years ago - 3 dependent repositories - 4.21 thousand downloads total - 3 stars on GitHub - 2 maintainers
GenussFold 0.0.0.2
generalized Algebraic Dynamic Programming Genus-1 RNA pseudoknot grammars implemented with a mul...2 versions - Latest release: almost 9 years ago - 1 dependent repositories - 1.73 thousand downloads total - 4 stars on GitHub - 1 maintainer
normalize 0.3.1.1
normalize4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 1.92 thousand downloads total - 0 stars on GitHub - 1 maintainer
ADPfusionSet 0.0.0.2
generalized Algebraic Dynamic Programming Extensions of ADPfusion for set-(like) data structures.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 2.01 thousand downloads total - 2 stars on GitHub - 1 maintainer
heatitup-complete 0.5.5.0
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the...4 versions - Latest release: about 4 years ago - 1.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
modularity 0.2.1.1
Find the modularity of a network.5 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 2.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
smiles 0.2.0.0
Full support of OpenSMILES and SMARTS specifications for Haskell4 versions - Latest release: over 6 years ago - 2.72 thousand downloads total - 6 stars on GitHub - 1 maintainer
subsample 0.1.0.0
Subsample data from a uniform distribution so two different statuses for the same entity have the...1 version - Latest release: almost 6 years ago - 744 downloads total - 0 stars on GitHub - 1 maintainer
Forestry 0.0.0.1
Wikipedia on forestry: "the science and craft of creating, managing, using, conserving, and repai...1 version - Latest release: over 6 years ago - 1 dependent repositories - 1.02 thousand downloads total - 2 stars on GitHub - 1 maintainer
tex-join-bib 0.1.0.0
Compile separate tex files with the same bibliography.1 version - Latest release: about 4 years ago - 339 downloads total - 0 stars on GitHub - 1 maintainer
elynx-tools 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.24 versions - Latest release: over 3 years ago - 6 dependent packages - 7 dependent repositories - 4.44 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-nexus 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...20 versions - Latest release: over 3 years ago - 1 dependent package - 6 dependent repositories - 2.85 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-markov 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...22 versions - Latest release: over 3 years ago - 1 dependent package - 6 dependent repositories - 3.37 thousand downloads total - 9 stars on GitHub - 1 maintainer
slynx 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 2 dependent packages - 7 dependent repositories - 4.25 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-tree 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 4 dependent packages - 7 dependent repositories - 4.47 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.22 versions - Latest release: over 3 years ago - 6 dependent repositories - 3.42 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-seq 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 3 dependent packages - 7 dependent repositories - 4.43 thousand downloads total - 9 stars on GitHub - 1 maintainer
tlynx 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 2 dependent packages - 7 dependent repositories - 4.21 thousand downloads total - 9 stars on GitHub - 1 maintainer
collapse-duplication 0.4.0.1
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.1 version - Latest release: over 5 years ago - 1 dependent repositories - 753 downloads total - 0 stars on GitHub - 1 maintainer
ADPfusionForest 0.0.0.1
ADPfusion for formal languages on tree and forest structures. This library connects @ForestStruct...1 version - Latest release: over 6 years ago - 1 dependent repositories - 1.09 thousand downloads total - 1 stars on GitHub - 1 maintainer
sgrep 0.0
1 version - Latest release: over 13 years ago - 1.06 thousand downloads total - 1 maintainersamtools-conduit 0.1.0.1
3 versions - Latest release: over 9 years ago - 1 dependent repositories - 2.18 thousand downloads total - 1 maintainergact 0.2
2 versions - Latest release: about 12 years ago - 1.94 thousand downloads total - 1 maintainersamtools-iteratee 0.2.2
5 versions - Latest release: over 12 years ago - 1 dependent repositories - 3.73 thousand downloads total - 1 maintainerpipes-ordered-zip 1.2.1
provides a simple function to merge two Pipes-Producers into a new Producer that yields pairs of ...5 versions - Latest release: about 3 years ago - 1 dependent package - 8 dependent repositories - 1.9 thousand downloads total - 1 maintainer
blastxml 0.3.2
4 versions - Latest release: over 9 years ago - 133 dependent repositories - 4.56 thousand downloads total - 1 maintainerrbr 0.8.6
RBR is a tool for masking EST sequences. It uses a statistical model to identify suspicious seque...3 versions - Latest release: over 13 years ago - 2.4 thousand downloads total - 2 maintainers
samtools-enumerator 0.1.2
4 versions - Latest release: over 12 years ago - 3.07 thousand downloads total - 1 maintainerflowsim 0.3.5
7 versions - Latest release: over 10 years ago - 5.87 thousand downloads total - 1 maintainerxsact 1.7.3
3 versions - Latest release: over 13 years ago - 2.48 thousand downloads total - 2 maintainersdephd 0.1.6
dephd - A simple tool for base calling and quality appraisal. Reads files in phd-format (phred o...7 versions - Latest release: about 13 years ago - 5.49 thousand downloads total - 2 maintainers
trimpolya 0
1 version - Latest release: over 14 years ago - 1.17 thousand downloads total - 1 maintainerxml2x 0.4.2
xml2x - convert blast output in XML format, either to a (csv) table suitable for e.g. importing i...4 versions - Latest release: over 14 years ago - 3.66 thousand downloads total - 2 maintainers
varan 0.5.1
3 versions - Latest release: over 9 years ago - 2.29 thousand downloads total - 1 maintainerBiobaseHTTP 1.2.0
BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl NC...2 versions - Latest release: over 4 years ago - 1 dependent repositories - 1.2 thousand downloads total - 4 stars on GitHub - 1 maintainer
EntrezHTTP 1.0.4
EntrezHTTP provides functions to query the NCBI entrez REST interface. There are multiple differ...5 versions - Latest release: over 6 years ago - 13 dependent repositories - 4.27 thousand downloads total - 4 stars on GitHub - 1 maintainer
simseq 0.0
This is a simulator that can generate simulated sequences -- primarily EST type sequences, but qu...1 version - Latest release: about 16 years ago - 1.19 thousand downloads total - 1 maintainer
TaxonomyTools 1.0.1
2 versions - Latest release: over 7 years ago - 2 dependent repositories - 1.75 thousand downloads total - 1 maintainerkorfu 0.1.1
3 versions - Latest release: over 14 years ago - 2.42 thousand downloads total - 1 maintainerTaxonomy 2.2.0
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the N...6 versions - Latest release: almost 3 years ago - 15 dependent repositories - 3.97 thousand downloads total - 1 maintainer
vcf 0.9.0
1 version - Latest release: over 6 years ago - 1 dependent repositories - 912 downloads total - 1 maintainerestreps 0.3.1
rselect - select a random set of sequences from a FASTA file, optinally with random orientation (...3 versions - Latest release: over 14 years ago - 2.71 thousand downloads total - 2 maintainers
cmv 1.0.8
cmv is a collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family ...8 versions - Latest release: over 6 years ago - 4.99 thousand downloads total - 1 maintainer
biocore 0.3.1
4 versions - Latest release: over 11 years ago - 135 dependent repositories - 6.06 thousand downloads total - 1 maintainerclustertools 0.1.5
This is a bunch of stuff I needed at some for manipulating sequence clusters. See the README for ...4 versions - Latest release: almost 13 years ago - 3.63 thousand downloads total - 2 maintainers
biofasta 0.0.3
3 versions - Latest release: over 11 years ago - 134 dependent repositories - 4.38 thousand downloads total - 1 maintainerbioace 0.0.1
2 versions - Latest release: almost 12 years ago - 133 dependent repositories - 2.57 thousand downloads total - 1 maintainerbioalign 0.0.5
6 versions - Latest release: almost 12 years ago - 133 dependent repositories - 6.65 thousand downloads total - 1 maintainerclassify-frog 0.2.3
4 versions - Latest release: over 5 years ago - 2 thousand downloads total - 1 maintainera50 0.5
a50 - a simple tool for graphing genome coverage and fragmentation. Reads files of contigs, and ...3 versions - Latest release: almost 11 years ago - 3.82 thousand downloads total - 1 maintainer
Related Keywords
library
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program
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gpl
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bsd3
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haskell
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mit
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formal-languages
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phylogenetics
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data-structures
6
algorithms
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bioinformatics-pipeline
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lgpl
1
mmtf
1
visualization
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protein-structure
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structural-biology
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single-cell-rna-seq
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single-cell-analysis
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domain-specific-language
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chemoinformatics
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parser
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smiles
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deprecated
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logic
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theorem-provers
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automated-deduction
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linear-logic
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molecular-biology
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theorem-proving
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bwa
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fastq
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fastq-format
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genomics
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haskell-language
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metagenomics
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next-generation-sequencing
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ngs
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samtools
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science
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linguistics
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bindings
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ffi
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ab1
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abif
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bioinformatics-algorithms
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single-cell
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