hackage.haskell.org "bioinformatics" keyword
View the packages on the hackage.haskell.org package registry that are tagged with the "bioinformatics" keyword.
StockholmAlignment 1.3.0
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent ...10 versions - Latest release: over 5 years ago - 2 dependent repositories - 7.15 thousand downloads total - 1 maintainer
NGLess 1.5.0
NGLess implements a domain-specific language for processing next generation data, particularly me...5 versions - Latest release: almost 3 years ago - 464 downloads total - 150 stars on GitHub - 1 maintainer
integreat 0.2.2.1
Integrate difference data sources and optionally perform differential integration.1 version - Latest release: about 7 years ago - 1 dependent repositories - 849 downloads total - 1 stars on GitHub - 1 maintainer
PDBtools 0.0.3
This is a collection of modules for the analysis of protein coordinates. The suite allows efficie...3 versions - Latest release: about 13 years ago - 1 dependent repositories - 3.25 thousand downloads total - 1 maintainer
sequence-formats 1.7.1
Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file forma...32 versions - Latest release: over 2 years ago - 1 dependent package - 10 dependent repositories - 7.03 thousand downloads total - 1 stars on GitHub - 1 maintainer
bioalign 0.0.5
6 versions - Latest release: about 13 years ago - 133 dependent repositories - 6.8 thousand downloads total - 1 maintainerGenbank 1.0.3
Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Cen...4 versions - Latest release: almost 11 years ago - 16 dependent repositories - 4.43 thousand downloads total - 1 maintainer
sequenceTools 1.5.2
The tools in this package process sequencing Data, in particular from ancient DNA sequencing libr...9 versions - Latest release: over 3 years ago - 1 dependent package - 7 dependent repositories - 2.76 thousand downloads total - 39 stars on GitHub - 1 maintainer
hyraxAbif 0.2.4.5
This library provides functionality for parsing, modifying, writing and generating ABIF files A...16 versions - Latest release: over 1 year ago - 2 dependent packages - 6.12 thousand downloads total - 11 stars on GitHub - 1 maintainer
adp-multi-monadiccp 0.2.1
3 versions - Latest release: about 12 years ago - 2.99 thousand downloads total - 1 maintainerBCMtools 0.1.1
2 versions - Latest release: about 10 years ago - 2.09 thousand downloads total - 1 maintainerFormalGrammars 0.4.0.0
generalized Algebraic Dynamic Programming Context-free grammars in formal language theory are se...10 versions - Latest release: almost 6 years ago - 4 dependent repositories - 8.74 thousand downloads total - 5 stars on GitHub - 1 maintainer
flower 0.7.2
13 versions - Latest release: almost 12 years ago - 9.87 thousand downloads total - 1 maintainerBlastHTTP 1.4.2
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and retur...9 versions - Latest release: about 4 years ago - 134 dependent repositories - 7.79 thousand downloads total - 5 stars on GitHub - 1 maintainer
smiles 0.2.0.0
Full support of OpenSMILES and SMARTS specifications for Haskell4 versions - Latest release: almost 8 years ago - 2.84 thousand downloads total - 6 stars on GitHub - 1 maintainer
blosum 0.1.1.4
BLOSUM matrix generator with the addition of any generic characters for special amino acids4 versions - Latest release: over 8 years ago - 16 dependent repositories - 3.32 thousand downloads total - 1 stars on GitHub - 1 maintainer
ViennaRNA-bindings 0.233.2.0
Bindings to the ViennaRNA package, version 2.3.3. Only a partial set of bindings is provided. If...10 versions - Latest release: over 7 years ago - 1 dependent repositories - 9.39 thousand downloads total - 2 stars on GitHub - 1 maintainer
hemokit 0.6.6
This package allows reading raw data from the Emotiv EPOC EEG devices. It is inspired and based ...12 versions - Latest release: almost 10 years ago - 1 dependent repositories - 8.69 thousand downloads total - 31 stars on GitHub - 2 maintainers
ADPfusion 0.6.0.0
generalized Algebraic Dynamic Programming ADPfusion combines stream-fusion (using the stream int...20 versions - Latest release: almost 6 years ago - 8 dependent repositories - 20 thousand downloads total - 27 stars on GitHub - 1 maintainer
ForestStructures 0.0.1.1
This library provides both static and dynamic tree and forest structures. Once a tree structure i...4 versions - Latest release: about 2 years ago - 15 dependent repositories - 3.49 thousand downloads total - 3 stars on GitHub - 1 maintainer
ADPfusionSet 0.0.0.2
generalized Algebraic Dynamic Programming Extensions of ADPfusion for set-(like) data structures.2 versions - Latest release: almost 8 years ago - 1 dependent repositories - 2.09 thousand downloads total - 2 stars on GitHub - 1 maintainer
BiobaseTypes 0.2.1.0
Types used in a number of bioinformatics libraries. linear indices energies biostring wrappers11 versions - Latest release: about 4 years ago - 12 dependent repositories - 8.59 thousand downloads total - 3 stars on GitHub - 1 maintainer
Biobase 0.3.1.1
6 versions - Latest release: over 14 years ago - 6.26 thousand downloads total - 1 maintainerRNAdraw 0.2.0.1
1 version - Latest release: over 11 years ago - 1.51 thousand downloads total - 1 maintainerflowsim 0.3.5
7 versions - Latest release: over 11 years ago - 6.08 thousand downloads total - 1 maintainersamtools 0.2.4
15 versions - Latest release: over 10 years ago - 1 dependent repositories - 11.5 thousand downloads total - 1 maintainerViennaRNAParser 1.3.3
Currently contains parsers and datatypes for: RNAalifold, RNAcode, RNAdistance, RNAcofold, RNAfol...15 versions - Latest release: almost 8 years ago - 24 dependent repositories - 12.8 thousand downloads total - 1 maintainer
diversity 0.8.1.0
Calculates the diversity of each position in a fasta file.26 versions - Latest release: almost 8 years ago - 2 dependent packages - 18 dependent repositories - 19 thousand downloads total - 1 stars on GitHub - 1 maintainer
xsact 1.7.3
3 versions - Latest release: almost 15 years ago - 2.57 thousand downloads total - 2 maintainersBiobaseDotP 0.1.0.0
1 version - Latest release: almost 14 years ago - 1.53 thousand downloads total - 1 maintainerBiobaseFasta 0.4.0.1
Stream-based handling of FASTA files. The user selects a window size, the library then handles th...10 versions - Latest release: about 4 years ago - 8 dependent repositories - 7.56 thousand downloads total - 4 stars on GitHub - 1 maintainer
birch-beer 0.4.2.1
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.25 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 10.3 thousand downloads total - 6 stars on GitHub - 1 maintainer
gact 0.2
2 versions - Latest release: over 13 years ago - 2.01 thousand downloads total - 1 maintainerClustalParser 1.3.0
Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign Clustal too...14 versions - Latest release: over 5 years ago - 23 dependent repositories - 11.7 thousand downloads total - 1 maintainer
adp-multi 0.2.3
6 versions - Latest release: about 12 years ago - 1 dependent repositories - 5.53 thousand downloads total - 1 maintainerrbr 0.8.6
RBR is a tool for masking EST sequences. It uses a statistical model to identify suspicious seque...3 versions - Latest release: almost 15 years ago - 2.49 thousand downloads total - 2 maintainers
dephd 0.1.6
dephd - A simple tool for base calling and quality appraisal. Reads files in phd-format (phred o...7 versions - Latest release: over 14 years ago - 5.68 thousand downloads total - 2 maintainers
a50 0.5
a50 - a simple tool for graphing genome coverage and fragmentation. Reads files of contigs, and ...3 versions - Latest release: about 12 years ago - 3.94 thousand downloads total - 1 maintainer
cmv 1.0.8
cmv is a collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family ...8 versions - Latest release: over 7 years ago - 5.25 thousand downloads total - 1 maintainer
biostockholm 0.3.4
10 versions - Latest release: about 10 years ago - 7.9 thousand downloads total - 1 maintainerTaxonomy 2.2.0
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the N...6 versions - Latest release: about 4 years ago - 15 dependent repositories - 4.15 thousand downloads total - 1 maintainer
AlignmentAlgorithms 0.1.0.0
generalized Algebraic Dynamic Programming A selection of (sequence) alignment algorithms. Both t...5 versions - Latest release: over 8 years ago - 1 dependent repositories - 4.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
heatitup-complete 0.5.5.0
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the...4 versions - Latest release: over 5 years ago - 1.68 thousand downloads total - 0 stars on GitHub - 1 maintainer
classify-frog 0.2.3
4 versions - Latest release: almost 7 years ago - 2.11 thousand downloads total - 1 maintainerSelectSequencesFromMSA 1.0.5
4 versions - Latest release: over 7 years ago - 2.87 thousand downloads total - 1 maintainerbiophd 0.0.8
Library for reading phd sequence files9 versions - Latest release: about 10 years ago - 97 dependent repositories - 7.52 thousand downloads total - 4 stars on GitHub - 1 maintainer
GrammarProducts 0.2.0.0
generalized Algebraic Dynamic Programming An algebra of linear and context-free grammars. This ...9 versions - Latest release: almost 6 years ago - 1 dependent repositories - 7.55 thousand downloads total - 2 stars on GitHub - 1 maintainer
RNAlien 1.7.0
14 versions - Latest release: almost 6 years ago - 7 dependent repositories - 9.95 thousand downloads total - 1 maintainerForestry 0.0.0.1
Wikipedia on forestry: "the science and craft of creating, managing, using, conserving, and repai...1 version - Latest release: over 7 years ago - 1 dependent repositories - 1.07 thousand downloads total - 2 stars on GitHub - 1 maintainer
vcf 0.9.0
1 version - Latest release: almost 8 years ago - 1 dependent repositories - 963 downloads total - 1 maintainerbiocore 0.3.1
4 versions - Latest release: over 12 years ago - 135 dependent repositories - 6.21 thousand downloads total - 1 maintainerBiobaseBlast 0.3.3.0
This library contains BLAST-related functionality: Parser for tabular NCBI BLAST+ output Parser...6 versions - Latest release: about 4 years ago - 3 dependent repositories - 4.39 thousand downloads total - 3 stars on GitHub - 2 maintainers
mmtf 0.1.3.1
Haskell implementation of MMTF biological structure format.6 versions - Latest release: over 6 years ago - 3.35 thousand downloads total - 4 stars on GitHub - 1 maintainer
BiobaseEnsembl 0.2.0.1
This library contains high through put sequencing and Ensembl-related functionality: - Datastruct...3 versions - Latest release: over 5 years ago - 8 dependent repositories - 1.76 thousand downloads total - 2 stars on GitHub - 1 maintainer
biofastq 0.1
1 version - Latest release: almost 13 years ago - 134 dependent repositories - 1.85 thousand downloads total - 1 maintainerbamstats 0.4
4 versions - Latest release: almost 12 years ago - 4.23 thousand downloads total - 1 maintainerheatitup 0.5.4.0
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spac...2 versions - Latest release: about 6 years ago - 1 dependent repositories - 1.2 thousand downloads total - 2 stars on GitHub - 1 maintainer
sgrep 0.0
1 version - Latest release: almost 15 years ago - 1.11 thousand downloads total - 1 maintainerViennaRNA-extras 0.0.0.1
Extra functionality on top of the ViennaRNA bindings. Please note the special license of the Vien...1 version - Latest release: over 7 years ago - 2 dependent repositories - 1.12 thousand downloads total - 1 stars on GitHub - 1 maintainer
RNAwolf 0.4.0.0
6 versions - Latest release: almost 14 years ago - 5.66 thousand downloads total - 1 maintainerNussinov78 0.1.0.0
5 versions - Latest release: over 12 years ago - 4.68 thousand downloads total - 1 maintainermodularity 0.2.1.1
Find the modularity of a network.5 versions - Latest release: almost 6 years ago - 1 dependent package - 1 dependent repositories - 2.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
bioace 0.0.1
2 versions - Latest release: about 13 years ago - 133 dependent repositories - 2.65 thousand downloads total - 1 maintainerrank-product 0.2.2.0
Collects the functions pertaining to finding the rank product of a data set as well as the associ...10 versions - Latest release: almost 7 years ago - 10 dependent repositories - 5.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
EntrezHTTP 1.0.4
EntrezHTTP provides functions to query the NCBI entrez REST interface. There are multiple differ...5 versions - Latest release: almost 8 years ago - 13 dependent repositories - 4.44 thousand downloads total - 4 stars on GitHub - 1 maintainer
samtools-conduit 0.1.0.1
3 versions - Latest release: over 10 years ago - 1 dependent repositories - 2.27 thousand downloads total - 1 maintainerRNAFoldProgs 0.0.0.3
3 versions - Latest release: almost 15 years ago - 2.89 thousand downloads total - 1 maintainerMC-Fold-DP 0.1.1.0
3 versions - Latest release: over 12 years ago - 2.94 thousand downloads total - 1 maintainerBioHMM 1.2.0
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models...20 versions - Latest release: about 8 years ago - 15.4 thousand downloads total - 1 maintainer
slynx 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...25 versions - Latest release: over 4 years ago - 2 dependent packages - 7 dependent repositories - 4.93 thousand downloads total - 9 stars on GitHub - 1 maintainer
CMCompare 0.0.1.5
4 versions - Latest release: over 12 years ago - 4.16 thousand downloads total - 1 maintainerblastxml 0.3.2
4 versions - Latest release: over 10 years ago - 133 dependent repositories - 4.68 thousand downloads total - 1 maintainerADPfusionForest 0.0.0.1
ADPfusion for formal languages on tree and forest structures. This library connects @ForestStruct...1 version - Latest release: over 7 years ago - 1 dependent repositories - 1.15 thousand downloads total - 1 stars on GitHub - 1 maintainer
tlynx 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...25 versions - Latest release: over 4 years ago - 2 dependent packages - 7 dependent repositories - 4.85 thousand downloads total - 9 stars on GitHub - 1 maintainer
samtools-iteratee 0.2.2
5 versions - Latest release: almost 14 years ago - 1 dependent repositories - 3.87 thousand downloads total - 1 maintainerBiobaseXNA 0.11.1.1
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well ...34 versions - Latest release: about 4 years ago - 12 dependent repositories - 31.7 thousand downloads total - 7 stars on GitHub - 1 maintainer
elynx 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.23 versions - Latest release: over 4 years ago - 6 dependent repositories - 4.14 thousand downloads total - 9 stars on GitHub - 1 maintainer
BiobaseVienna 0.3.0.0
11 versions - Latest release: over 12 years ago - 1 dependent repositories - 10.8 thousand downloads total - 1 maintainerelynx-seq 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...25 versions - Latest release: over 4 years ago - 3 dependent packages - 7 dependent repositories - 5.11 thousand downloads total - 9 stars on GitHub - 1 maintainer
BiobaseNewick 0.0.0.2
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled w...2 versions - Latest release: about 8 years ago - 9 dependent repositories - 2.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
xml2x 0.4.2
xml2x - convert blast output in XML format, either to a (csv) table suitable for e.g. importing i...4 versions - Latest release: almost 16 years ago - 3.81 thousand downloads total - 2 maintainers
subsample 0.1.0.0
Subsample data from a uniform distribution so two different statuses for the same entity have the...1 version - Latest release: about 7 years ago - 788 downloads total - 0 stars on GitHub - 1 maintainer
tex-join-bib 0.1.0.0
Compile separate tex files with the same bibliography.1 version - Latest release: over 5 years ago - 426 downloads total - 0 stars on GitHub - 1 maintainer
clustertools 0.1.5
This is a bunch of stuff I needed at some for manipulating sequence clusters. See the README for ...4 versions - Latest release: about 14 years ago - 3.75 thousand downloads total - 2 maintainers
collapse-duplication 0.4.0.1
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.1 version - Latest release: almost 7 years ago - 1 dependent repositories - 803 downloads total - 0 stars on GitHub - 1 maintainer
elynx-markov 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...23 versions - Latest release: over 4 years ago - 1 dependent package - 6 dependent repositories - 4.03 thousand downloads total - 9 stars on GitHub - 1 maintainer
BiobaseMAF 0.5.0.0
1 version - Latest release: almost 14 years ago - 1.55 thousand downloads total - 1 maintainerelynx-tools 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.25 versions - Latest release: over 4 years ago - 6 dependent packages - 7 dependent repositories - 5.17 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-nexus 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...21 versions - Latest release: over 4 years ago - 1 dependent package - 6 dependent repositories - 3.46 thousand downloads total - 9 stars on GitHub - 1 maintainer
phybin 0.2.11
This package provides a libary and executable for dealing with Newick tree files. It can do simp...9 versions - Latest release: almost 12 years ago - 1 dependent repositories - 6.99 thousand downloads total - 1 maintainer
samtools-enumerator 0.1.2
4 versions - Latest release: almost 14 years ago - 3.18 thousand downloads total - 1 maintainerbiosff 0.3.7
9 versions - Latest release: almost 12 years ago - 93 dependent repositories - 9.17 thousand downloads total - 1 maintainervaran 0.5.1
3 versions - Latest release: over 10 years ago - 2.39 thousand downloads total - 1 maintainerGenussFold 0.0.0.2
generalized Algebraic Dynamic Programming Genus-1 RNA pseudoknot grammars implemented with a mul...2 versions - Latest release: about 10 years ago - 1 dependent repositories - 1.81 thousand downloads total - 4 stars on GitHub - 1 maintainer
biofasta 0.0.3
3 versions - Latest release: over 12 years ago - 134 dependent repositories - 4.48 thousand downloads total - 1 maintainermemexml 0.0.3
Haskell cabal libary for parsing Meme motif finder xml output3 versions - Latest release: almost 10 years ago - 2.75 thousand downloads total - 3 stars on GitHub - 1 maintainer
elynx-tree 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 4 years ago - 4 dependent packages - 7 dependent repositories - 5.18 thousand downloads total - 9 stars on GitHub - 1 maintainer
BiobaseHTTPTools 1.0.0
1 version - Latest release: over 6 years ago - 852 downloads total - 1 maintainerestreps 0.3.1
rselect - select a random set of sequences from a FASTA file, optinally with random orientation (...3 versions - Latest release: almost 16 years ago - 2.8 thousand downloads total - 2 maintainers
hs-samtools 0.10.0.3
11 versions - Latest release: about 1 year ago - 1 dependent repositories - 390 downloads total - 2 stars on GitHub - 1 maintainer
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