An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "electrophysiology" keyword

View the packages on the pypi.org package registry that are tagged with the "electrophysiology" keyword.

miv-os 0.3.2
Python software for analysis and computing framework used in MiV project.
29 versions - Latest release: about 8 hours ago - 1 dependent repositories - 798 downloads last month - 13 stars on GitHub - 1 maintainer
physion 1.2.1
Vision Physiology Software
7 versions - Latest release: 3 months ago - 347 downloads last month - 3 stars on GitHub - 1 maintainer
kilosort 4.0.32
spike sorting pipeline
33 versions - Latest release: 3 days ago - 5.16 thousand downloads last month - 521 stars on GitHub - 2 maintainers
clampsuite 0.0.4
Slice electrophysiology analysis package for analyzing mEPSCs, o/eEPSCs and current clamp data.
3 versions - Latest release: about 1 year ago - 108 downloads last month - 2 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
spikeinterface 0.102.2
Python toolkit for analysis, visualization, and comparison of spike sorting output
40 versions - Latest release: 17 days ago - 15 dependent packages - 21 dependent repositories - 56.2 thousand downloads last month - 588 stars on GitHub - 2 maintainers
fenicsx-beat 0.1.2
Library to run cardiac EP simulations
4 versions - Latest release: 1 day ago - 335 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
klustakwik2 0.2.7
Clustering for high dimensional neural data
12 versions - Latest release: almost 6 years ago - 1 dependent package - 10 dependent repositories - 567 downloads last month - 32 stars on GitHub - 4 maintainers
binconverter 1.0.4
BinConverter - GUI that will allow the user to convert the raw (.bin) files from Axona's Tint sof...
5 versions - Latest release: over 5 years ago - 1 dependent repositories - 222 downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
herdingspikes 0.4.6
Efficient spike detection and sorting for dense MEA
18 versions - Latest release: 5 months ago - 2 dependent packages - 8 dependent repositories - 519 downloads last month - 26 stars on GitHub - 3 maintainers
Top 7.3% on pypi.org
phy 1.0.9
Spike sorting and ephys data analysis for 1000 channels and beyond
22 versions - Latest release: over 8 years ago - 2 dependent packages - 9 dependent repositories - 792 downloads last month - 345 stars on GitHub - 2 maintainers
ephys-link 2.0.2
A Python Socket.IO server that allows any Socket.IO-compliant application to communicate with man...
57 versions - Latest release: 10 days ago - 1 dependent repositories - 1.57 thousand downloads last month - 1 stars on GitHub - 2 maintainers
spikesorters 0.4.5
Python wrappers for popular spike sorters
25 versions - Latest release: over 3 years ago - 1 dependent package - 7 dependent repositories - 615 downloads last month - 20 stars on GitHub - 1 maintainer
gebaspike 1.1.0
gebaSpike - GUI designed to improve manual spike sorting of in-vivo electrophysiology data.
12 versions - Latest release: over 4 years ago - 1 dependent repositories - 334 downloads last month - 2 stars on GitHub - 1 maintainer
ephysvibe 0.0.2
.
2 versions - Latest release: over 2 years ago - 99 downloads last month - 2 stars on GitHub - 1 maintainer
neurotic 1.5.0
Curate, visualize, annotate, and share your behavioral ephys data using Python
20 versions - Latest release: over 4 years ago - 1 dependent repositories - 499 downloads last month - 33 stars on GitHub - 1 maintainer
pyrasa 1.0.0
Spectral parametrization based on IRASA
1 version - Latest release: 6 months ago - 67 downloads last month - 9 stars on GitHub - 2 maintainers
fenicsx-ldrb 0.1.9
Laplace-Dirichlet Rule-based algorithm for assigning myocardial fiber orientations.
10 versions - Latest release: 2 months ago - 468 downloads last month - 1 stars on GitHub - 1 maintainer
simcardems 2023.7.1
Simula Cardiac electromechanics solver
35 versions - Latest release: over 1 year ago - 1 dependent repositories - 1.08 thousand downloads last month - 11 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
mnelab 1.0.0
A graphical user interface for MNE
30 versions - Latest release: 2 months ago - 3 dependent repositories - 1.1 thousand downloads last month - 254 stars on GitHub - 1 maintainer
spiketools 0.2.0
Module for analyzing spiking data.
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 206 downloads last month - 13 stars on GitHub - 1 maintainer
fenics-beat 0.1.1
Library to run cardiac EP simulations
10 versions - Latest release: 8 months ago - 286 downloads last month - 7 stars on GitHub - 1 maintainer
eeg-positions 2.1.2
Compute and plot standard EEG electrode positions.
4 versions - Latest release: 4 months ago - 1 dependent repositories - 347 downloads last month - 67 stars on GitHub - 1 maintainer
mcspydatatools 0.4.3
Handling data recorded and provided by Multi Channel Systems MCS GmbH systems
6 versions - Latest release: almost 3 years ago - 1 dependent package - 1 dependent repositories - 336 downloads last month - 10 stars on GitHub - 3 maintainers
spikeinterface-pipelines 0.0.11
Collection of standardized analysis pipelines based on SpikeInterfacee.
10 versions - Latest release: 12 months ago - 370 downloads last month - 3 stars on GitHub - 2 maintainers
neuro-analysis-py 0.0.2
Analysis of neuroelectrophysiology data in Python.
2 versions - Latest release: about 2 years ago - 46 downloads last month - 10 stars on GitHub - 1 maintainer
egegrouper 0.7.1
Tool for grouping EGEG examinations
11 versions - Latest release: about 7 years ago - 1 dependent repositories - 366 downloads last month - 1 maintainer
specparam 2.0.0rc3
Spectral parameterization.
4 versions - Latest release: about 1 month ago - 499 downloads last month - 384 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
fooof 1.1.0
fitting oscillations & one-over f
13 versions - Latest release: over 1 year ago - 10 dependent packages - 21 dependent repositories - 6.07 thousand downloads last month - 384 stars on GitHub - 1 maintainer
spyglass-neuro 0.5.4
Neuroscience data analysis framework for reproducible research
25 versions - Latest release: 4 months ago - 1 dependent repositories - 806 downloads last month - 87 stars on GitHub - 3 maintainers
ephypype 0.5
Python package providing pipelines for electrophysiological (EEG/MEG) data within nipype framework.
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 310 downloads last month - 23 stars on GitHub - 2 maintainers
unitmatchpy 2.41
Multichannel time series lossless compression in pure Python based on NumPy and zlib
21 versions - Latest release: 5 months ago - 806 downloads last month - 39 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
mtscomp 1.0.2
Lossless compression for electrophysiology time-series
5 versions - Latest release: almost 4 years ago - 7 dependent packages - 8 dependent repositories - 45.2 thousand downloads last month - 39 stars on GitHub - 3 maintainers
bycycle 1.1.0
Cycle-by-cycle analyses of neural oscillations.
9 versions - Latest release: about 2 years ago - 2 dependent repositories - 434 downloads last month - 84 stars on GitHub - 2 maintainers
Top 7.9% on pypi.org
neurora 1.1.1
A Python Toolbox for Multimodal Neural Data Representation Analysis
151 versions - Latest release: almost 5 years ago - 3 dependent repositories - 2.89 thousand downloads last month - 179 stars on GitHub - 1 maintainer
elecphys 0.0.57
Electrophysiology data processing
13 versions - Latest release: 11 months ago - 401 downloads last month - 1 stars on GitHub - 1 maintainer
emodel-generalisation 0.2.14
Generalisation of neuronal electrical models with MCMC
16 versions - Latest release: 6 months ago - 327 downloads last month - 4 stars on GitHub - 2 maintainers
pyret 0.6.0
Tools for the analysis of neural electrophysiology data
13 versions - Latest release: almost 7 years ago - 2 dependent repositories - 262 downloads last month - 36 stars on GitHub - 2 maintainers
axopy 0.2.3
Human-computer interface experimentation library
7 versions - Latest release: about 6 years ago - 2 dependent repositories - 280 downloads last month - 24 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
neurodsp 2.3.0
Digital signal processing for neural time series.
12 versions - Latest release: 2 months ago - 3 dependent packages - 11 dependent repositories - 3.31 thousand downloads last month - 279 stars on GitHub - 3 maintainers
biopeaks 1.4.4
A graphical user interface for feature extraction from heart- and breathing biosignals.
19 versions - Latest release: over 3 years ago - 1 dependent repositories - 495 downloads last month - 67 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
spectral-connectivity 1.1.2
Frequency domain functional and directedconnectivity analysis tools for electrophysiologicaldata
16 versions - Latest release: almost 2 years ago - 3 dependent packages - 3 dependent repositories - 714 downloads last month - 127 stars on GitHub - 1 maintainer
neuroglia 0.1.0
scikit-learn compatible transformers for neural data science
1 version - Latest release: about 7 years ago - 1 dependent repositories - 77 downloads last month - 36 stars on GitHub - 2 maintainers
neural-activity-resource 0.1.0
Python API for the Human Brain Project Neural Activity Resource
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 1 maintainer
mef-tools 1.2.3
Tools for easy and efficient handling of Multiscale Eleptrophysiology Format (MEF3).
15 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 422 downloads last month - 0 stars on GitHub - 1 maintainer
efelunit 2.0.3
A SciUnit library for data-driven testing of neuronal morphologies.
11 versions - Latest release: over 2 years ago - 1 dependent repositories - 210 downloads last month - 0 stars on GitHub - 1 maintainer
pyparrm 1.1.1
A Python port of the PARRM algorithm
3 versions - Latest release: 4 months ago - 1 dependent package - 699 downloads last month - 5 stars on GitHub - 1 maintainer
hsmm-mvpy 0.3.1
DEPRECATED new name under HMP, see https://pypi.org/project/hmp/
66 versions - Latest release: about 1 year ago - 2.06 thousand downloads last month - 32 stars on GitHub - 1 maintainer
element-array-ephys 0.2.11
DataJoint Element for Extracellular Array Electrophysiology
14 versions - Latest release: almost 2 years ago - 2 dependent repositories - 460 downloads last month - 5 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
pyabf 2.3.8
Python library for reading files in Axon Binary Format (ABF)
63 versions - Latest release: over 1 year ago - 7 dependent packages - 19 dependent repositories - 3.41 thousand downloads last month - 98 stars on GitHub - 1 maintainer
phycontrib 1.0.15
Spike sorting and ephys data analysis for 1000 channels and beyond
16 versions - Latest release: over 8 years ago - 2 dependent repositories - 485 downloads last month - 340 stars on GitHub - 2 maintainers
hs-detection 0.3.0
Spike detection from HS2, used for integration in SpikeInterface
4 versions - Latest release: over 2 years ago - 98 downloads last month - 0 stars on GitHub - 2 maintainers
pte-xdf 0.1.0
A package for loading XDF files recorded with TMSi amplifiers.
2 versions - Latest release: over 2 years ago - 77 downloads last month - 0 stars on GitHub - 1 maintainer
forked-ecephys-spike-sorting 0.1.1
Tools for spike-sorting Allen Institute Neuropixels data
2 versions - Latest release: over 1 year ago - 1 dependent package - 97 downloads last month - 114 stars on GitHub - 1 maintainer
fairgraph 0.12.2
Python API for the EBRAINS Knowledge Graph
19 versions - Latest release: 4 months ago - 1 dependent repositories - 463 downloads last month - 11 stars on GitHub - 1 maintainer
ezephys 0.4.3
Tools for working with electrophysiological data.
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 149 downloads last month - 4 stars on GitHub - 1 maintainer
demounit 0.0.5
A SciUnit library for data-driven testing of neurons.
4 versions - Latest release: over 5 years ago - 1 dependent repositories - 122 downloads last month - 0 stars on GitHub - 1 maintainer
sanpy-ephys 0.2.3
Whole cell current-clamp analysis.
8 versions - Latest release: over 1 year ago - 259 downloads last month - 13 stars on GitHub - 1 maintainer
nwb-datajoint 0.2.6
Neuroscience data pipeline for reproducible research used by Loren Frank Lab, UCSF
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 112 downloads last month - 93 stars on GitHub - 1 maintainer
npyx 4.1.3
Utilities to load, process, and plot Neuropixels data in Python.
75 versions - Latest release: 3 months ago - 2 dependent repositories - 1.58 thousand downloads last month - 115 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
elephant 1.1.1
Elephant is a package for analysis of electrophysiology data in Python
27 versions - Latest release: 6 months ago - 9 dependent packages - 50 dependent repositories - 19 thousand downloads last month - 184 stars on GitHub - 5 maintainers
invian 0.0.3
Package to analyze in vivo neural data
2 versions - Latest release: over 1 year ago - 82 downloads last month - 0 stars on GitHub - 1 maintainer
pynamicgain 0.0.9
Dynamic Gain input generation for distributed PClamp setups.
1 version - Latest release: 11 months ago - 43 downloads last month - 0 stars on GitHub - 1 maintainer
blechpy 2.2.14
Package for exrtacting, processing and analyzing Intan and OpenEphys data
157 versions - Latest release: 12 months ago - 2 dependent repositories - 3.25 thousand downloads last month - 11 stars on GitHub - 2 maintainers
nelpy 0.2.1
Neuroelectrophysiology object model and data analysis in Python.
14 versions - Latest release: about 6 years ago - 1 dependent repositories - 273 downloads last month - 50 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
phylib 2.6.0
Ephys data analysis for thousands of channels
11 versions - Latest release: 10 months ago - 3 dependent packages - 8 dependent repositories - 52.1 thousand downloads last month - 13 stars on GitHub - 3 maintainers
jagular 0.0.2
Out-of-core pre-processing of big-ish electrophysiology data.
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 87 downloads last month - 3 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
bluepyopt 1.14.18
Blue Brain Python Optimisation Library (bluepyopt)
373 versions - Latest release: 3 months ago - 8 dependent packages - 17 dependent repositories - 6.8 thousand downloads last month - 190 stars on GitHub - 4 maintainers
cleosim 0.17.0
Cleo: the Closed-Loop, Electrophysiology, and Optogenetics experiment simulation testbed
26 versions - Latest release: about 1 month ago - 2 dependent repositories - 744 downloads last month - 16 stars on GitHub - 1 maintainer
pydapsys 0.2.1
Read recordings made with DAPSYS
6 versions - Latest release: almost 2 years ago - 206 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.7% on pypi.org
viziphant 0.4.0
Viziphant is a package for the visualization of the analysisresults of electrophysiology data in ...
4 versions - Latest release: over 1 year ago - 1 dependent package - 10 dependent repositories - 166 downloads last month - 22 stars on GitHub - 3 maintainers
spikewidgets 0.5.4
Python widgets for spike sorting and electrophysiology
33 versions - Latest release: over 3 years ago - 1 dependent package - 7 dependent repositories - 547 downloads last month - 6 stars on GitHub - 2 maintainers
Top 4.2% on pypi.org
spikeextractors 0.9.11
Python module for extracting recorded and spike sorted extracellular data from different file typ...
48 versions - Latest release: over 2 years ago - 3 dependent packages - 23 dependent repositories - 1.61 thousand downloads last month - 116 stars on GitHub - 2 maintainers
neuraltoolkit 0.4.0
A powerful and fast set of tools for loading data, filtering, processing, working ...
3 versions - Latest release: 6 months ago - 2 dependent packages - 1 dependent repositories - 106 downloads last month - 8 stars on GitHub - 1 maintainer
tdms2axg 0.2.0
A simple script for converting LabVIEW TDMS files to AxoGraph files
4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 207 downloads last month - 0 stars on GitHub - 1 maintainer
egegsignals 1.0.6
Package for processing EGG/EGEG signals
7 versions - Latest release: over 6 years ago - 1 dependent repositories - 201 downloads last month - 1 maintainer
binmsgui 1.0.4
BinMSGUI, sorts .bin data through MountainSort and exports as Tint format.
5 versions - Latest release: over 5 years ago - 186 downloads last month - 1 stars on GitHub - 2 maintainers
tissue-detection 0.0.2
General suite of ODE solvers
2 versions - Latest release: almost 2 years ago - 71 downloads last month - 0 stars on GitHub - 1 maintainer
odesolver 0.0.1
General suite of ODE solvers
1 version - Latest release: almost 2 years ago - 63 downloads last month - 0 stars on GitHub - 1 maintainer
orange3-mne 1.0.13
Electrophysiological data processing widgets for Orange 3 based on the MNE for Python library.
12 versions - Latest release: over 2 years ago - 1 dependent repositories - 310 downloads last month - 0 stars on gitlab.com - 1 maintainer
synapticonn 0.0.1rc4
Inferring monosynaptic connections in neural circuits.
4 versions - Latest release: 3 months ago - 145 downloads last month - 1 stars on GitHub - 1 maintainer
pykilosort 1.4.6
Python port of KiloSort 2
1 version - Latest release: over 1 year ago - 1 dependent repositories - 51 downloads last month - 50 stars on GitHub - 1 maintainer
musclebeachtools 1.4.1
This package used to analyze neuron data, from basic plotting (ISI histograms, firi...
3 versions - Latest release: 6 months ago - 118 downloads last month - 4 stars on GitHub - 1 maintainer
shybrid 0.4.3
A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting per...
6 versions - Latest release: over 3 years ago - 2 dependent packages - 1 dependent repositories - 79 downloads last month - 9 stars on GitHub - 1 maintainer
openmnglab 0.3.0
A Python framework for microneurography analysis
6 versions - Latest release: over 1 year ago - 157 downloads last month - 0 stars on GitHub - 2 maintainers
pydread 0.0a1
Wrapper of C library for .d file reading
7 versions - Latest release: over 3 years ago - 2 dependent repositories - 292 downloads last month - 0 stars on GitHub - 1 maintainer
hmp 0.5.0
Package for fitting Hidden Multivariate pattern model to time-series
7 versions - Latest release: 4 months ago - 188 downloads last month - 32 stars on GitHub - 1 maintainer
ebosc 0.10.dev0
extended Better Oscillation Detection, implemented in python3
1 version - Latest release: about 3 years ago - 1 dependent repositories - 57 downloads last month - 6 stars on GitHub - 1 maintainer
escope 3.3.1
A software oscilloscope for electrophysiology
5 versions - Latest release: 6 months ago - 185 downloads last month - 0 stars on GitHub - 1 maintainer
swc-ephys 0.0.0
Manage extracellular electrophysiology analysis
1 version - Latest release: over 1 year ago - 36 downloads last month - 8 stars on GitHub - 1 maintainer
ephyspy 0.0.5
Package to extract summary statistics from electrophysiological data.
3 versions - Latest release: over 1 year ago - 93 downloads last month - 3 stars on GitHub - 1 maintainer
axographio 0.3.2
A Python package for reading and writing AxoGraph data files
6 versions - Latest release: about 4 years ago - 4 dependent repositories - 316 downloads last month - 2 stars on GitHub - 2 maintainers
pysiology 0.0.9.6 💰
Physiological signal processing in Python
5 versions - Latest release: about 3 years ago - 1 dependent repositories - 273 downloads last month - 62 stars on GitHub - 2 maintainers
biosimulations-modeldb 0.0.4
Command-line program for publishing the ModelDB model repository to BioSimulations.
3 versions - Latest release: about 3 years ago - 119 downloads last month - 0 stars on GitHub - 1 maintainer
simplyfire 0.6.1
Customizable electrophysiology analysis software
8 versions - Latest release: over 1 year ago - 1 dependent repositories - 194 downloads last month - 1 stars on GitHub - 2 maintainers
dopltech-sdk 1.0.2
Dopl Technologies SDK
5 versions - Latest release: about 4 years ago - 1 dependent repositories - 148 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
efel 5.7.16
Electrophys Feature Extract Library (eFEL)
391 versions - Latest release: 3 months ago - 9 dependent packages - 27 dependent repositories - 44.1 thousand downloads last month - 1 stars on GitHub - 4 maintainers
demotestunit 1.2.0
A SciUnit library for data-driven testing of neurons.
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 67 downloads last month - 1 stars on GitHub - 1 maintainer
kilosort4 0.0.1 removed
A small example package
1 version - Latest release: over 2 years ago - 28 downloads last month - 325 stars on GitHub - 2 maintainers
mselair-aisc 0.1.4 removed
Python package for EEG sleep classification and analysis.
11 versions - Latest release: about 4 years ago - 1 dependent package - 42 downloads last month - 0 stars on GitHub - 1 maintainer
brainspike 1.0.31 removed
Python toolbox for high-throughput patch-clamp analysis
27 versions - Latest release: about 2 years ago - 656 downloads last month - 1 maintainer