Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "electrophysiology" keyword
axographio 0.3.2
A Python package for reading and writing AxoGraph data files6 versions - Latest release: about 3 years ago - 4 dependent repositories - 103 downloads last month - 2 stars on GitHub - 2 maintainers
Top 3.8% on pypi.org
367 versions - Latest release: about 1 month ago - 8 dependent packages - 17 dependent repositories - 3.63 thousand downloads last month - 190 stars on GitHub - 3 maintainers
bluepyopt 1.14.12
Bluebrain Python Optimisation Library (bluepyopt)367 versions - Latest release: about 1 month ago - 8 dependent packages - 17 dependent repositories - 3.63 thousand downloads last month - 190 stars on GitHub - 3 maintainers
Top 3.0% on pypi.org
26 versions - Latest release: about 2 months ago - 9 dependent packages - 50 dependent repositories - 23.6 thousand downloads last month - 184 stars on GitHub - 5 maintainers
elephant 1.1.0
Elephant is a package for analysis of electrophysiology data in Python26 versions - Latest release: about 2 months ago - 9 dependent packages - 50 dependent repositories - 23.6 thousand downloads last month - 184 stars on GitHub - 5 maintainers
spikeinterface-pipelines 0.0.11
Collection of standardized analysis pipelines based on SpikeInterfacee.10 versions - Latest release: about 1 month ago - 99 downloads last month - 3 stars on GitHub - 2 maintainers
kilosort 4.0.7
spike sorting pipeline9 versions - Latest release: 17 days ago - 1.5 thousand downloads last month - 393 stars on GitHub - 2 maintainers
binconverter 1.0.4
BinConverter - GUI that will allow the user to convert the raw (.bin) files from Axona's Tint sof...5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 42 downloads last month - 5 stars on GitHub - 1 maintainer
phycontrib 1.0.15
Spike sorting and ephys data analysis for 1000 channels and beyond16 versions - Latest release: over 7 years ago - 2 dependent repositories - 112 downloads last month - 293 stars on GitHub - 2 maintainers
hs-detection 0.3.0
Spike detection from HS2, used for integration in SpikeInterface4 versions - Latest release: almost 2 years ago - 12 downloads last month - 0 stars on GitHub - 2 maintainers
elecphys 0.0.56
Electrophysiology data processing13 versions - Latest release: 3 months ago - 57 downloads last month - 1 stars on GitHub - 1 maintainer
fenics-beat 0.0.5
Library to run cardiac EP simulations5 versions - Latest release: 13 days ago - 231 downloads last month - 3 stars on GitHub - 1 maintainer
spikewidgets 0.5.4
Python widgets for spike sorting and electrophysiology33 versions - Latest release: almost 3 years ago - 1 dependent package - 7 dependent repositories - 97 downloads last month - 6 stars on GitHub - 2 maintainers
ephys-link 1.3.0
A Python Socket.IO server that allows any Socket.IO-compliant application to communicate with man...46 versions - Latest release: 18 days ago - 1 dependent repositories - 442 downloads last month - 1 stars on GitHub - 2 maintainers
cleosim 0.14.3
Cleo: the Closed-Loop, Electrophysiology, and Optogenetics experiment simulation testbed22 versions - Latest release: 19 days ago - 2 dependent repositories - 232 downloads last month - 9 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
9 versions - Latest release: almost 2 years ago - 2 dependent packages - 8 dependent repositories - 85 downloads last month - 26 stars on GitHub - 3 maintainers
herdingspikes 0.3.102
Efficient spike detection and sorting for dense MEA9 versions - Latest release: almost 2 years ago - 2 dependent packages - 8 dependent repositories - 85 downloads last month - 26 stars on GitHub - 3 maintainers
musclebeachtools 1.2.1
This package used to analyze neuron data, from basic plotting (ISI histograms, firi...2 versions - Latest release: about 1 year ago - 18 downloads last month - 4 stars on GitHub - 1 maintainer
shybrid 0.4.3
A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting per...6 versions - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 66 downloads last month - 9 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
370 versions - Latest release: 14 days ago - 9 dependent packages - 27 dependent repositories - 20.1 thousand downloads last month - 63 stars on GitHub - 3 maintainers
efel 5.6.24
Electrophys Feature Extract Library (eFEL)370 versions - Latest release: 14 days ago - 9 dependent packages - 27 dependent repositories - 20.1 thousand downloads last month - 63 stars on GitHub - 3 maintainers
spikesorters 0.4.5
Python wrappers for popular spike sorters25 versions - Latest release: almost 3 years ago - 1 dependent package - 7 dependent repositories - 146 downloads last month - 19 stars on GitHub - 1 maintainer
simcardems 2023.7.1
Simula Cardiac electromechanics solver35 versions - Latest release: 7 months ago - 1 dependent repositories - 404 downloads last month - 9 stars on GitHub - 1 maintainer
fairgraph 0.12.0
Python API for the EBRAINS Knowledge Graph17 versions - Latest release: about 1 month ago - 1 dependent repositories - 146 downloads last month - 10 stars on GitHub - 1 maintainer
spyglass-neuro 0.5.2
Neuroscience data analysis framework for reproducible research23 versions - Latest release: about 1 month ago - 1 dependent repositories - 489 downloads last month - 78 stars on GitHub - 3 maintainers
tdms2axg 0.2.0
A simple script for converting LabVIEW TDMS files to AxoGraph files4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 52 downloads last month - 0 stars on GitHub - 1 maintainer
pydapsys 0.2.1
Read recordings made with DAPSYS6 versions - Latest release: about 1 year ago - 45 downloads last month - 0 stars on GitHub - 2 maintainers
physion 0.1.1
Vision Physiology Software4 versions - Latest release: over 1 year ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
spiketools 0.2.0
Module for analyzing spiking data.5 versions - Latest release: 7 months ago - 1 dependent repositories - 14 downloads last month - 13 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
5 versions - Latest release: about 3 years ago - 7 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 27 stars on GitHub - 3 maintainers
mtscomp 1.0.2
Lossless compression for electrophysiology time-series5 versions - Latest release: about 3 years ago - 7 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 27 stars on GitHub - 3 maintainers
ephysvibe 0.0.2
.2 versions - Latest release: over 1 year ago - 28 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
10 versions - Latest release: 9 days ago - 3 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 10 stars on GitHub - 3 maintainers
phylib 2.5.0
Ephys data analysis for thousands of channels10 versions - Latest release: 9 days ago - 3 dependent packages - 8 dependent repositories - 55.8 thousand downloads last month - 10 stars on GitHub - 3 maintainers
clampsuite 0.0.4
Slice electrophysiology analysis package for analyzing mEPSCs, o/eEPSCs and current clamp data.3 versions - Latest release: 2 months ago - 18 downloads last month - 2 stars on GitHub - 1 maintainer
unitmatchpy 1.5b0
Description of the package3 versions - Latest release: 10 days ago - 27 stars on GitHub - 1 maintainer
jagular 0.0.2
Out-of-core pre-processing of big-ish electrophysiology data.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 3 stars on GitHub - 1 maintainer
odesolver 0.0.1
General suite of ODE solvers1 version - Latest release: about 1 year ago - 30 downloads last month - 0 stars on GitHub - 1 maintainer
mef-tools 1.2.3
Tools for easy and efficient handling of Multiscale Eleptrophysiology Format (MEF3).15 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 285 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
30 versions - Latest release: 26 days ago - 15 dependent packages - 21 dependent repositories - 78.2 thousand downloads last month - 419 stars on GitHub - 2 maintainers
spikeinterface 0.100.6
Python toolkit for analysis, visualization, and comparison of spike sorting output30 versions - Latest release: 26 days ago - 15 dependent packages - 21 dependent repositories - 78.2 thousand downloads last month - 419 stars on GitHub - 2 maintainers
neuraltoolkit 0.3.1
A powerful and fast set of tools for loading data, filtering, processing, working ...2 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 36 downloads last month - 8 stars on GitHub - 1 maintainer
Top 4.0% on pypi.org
11 versions - Latest release: over 1 year ago - 3 dependent packages - 11 dependent repositories - 3.84 thousand downloads last month - 275 stars on GitHub - 3 maintainers
neurodsp 2.2.1
Digital signal processing for neural time series.11 versions - Latest release: over 1 year ago - 3 dependent packages - 11 dependent repositories - 3.84 thousand downloads last month - 275 stars on GitHub - 3 maintainers
nelpy 0.2.1
Neuroelectrophysiology object model and data analysis in Python.14 versions - Latest release: over 5 years ago - 1 dependent repositories - 85 downloads last month - 45 stars on GitHub - 1 maintainer
neuro-analysis-py 0.0.2
Analysis of neuroelectrophysiology data in Python.2 versions - Latest release: about 1 year ago - 13 downloads last month - 1 stars on GitHub - 1 maintainer
hsmm-mvpy 0.3.1
DEPRECATED new name under HMP, see https://pypi.org/project/hmp/66 versions - Latest release: 3 months ago - 558 downloads last month - 30 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
16 versions - Latest release: 10 months ago - 3 dependent packages - 3 dependent repositories - 588 downloads last month - 117 stars on GitHub - 1 maintainer
spectral-connectivity 1.1.2
Frequency domain functional and directedconnectivity analysis tools for electrophysiologicaldata16 versions - Latest release: 10 months ago - 3 dependent packages - 3 dependent repositories - 588 downloads last month - 117 stars on GitHub - 1 maintainer
pyparrm 1.1.0
A Python port of the PARRM algorithm2 versions - Latest release: 12 months ago - 1 dependent package - 335 downloads last month - 4 stars on GitHub - 1 maintainer
mcspydatatools 0.4.3
Handling data recorded and provided by Multi Channel Systems MCS GmbH systems6 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 120 downloads last month - 8 stars on GitHub - 3 maintainers
ezephys 0.4.3
Tools for working with electrophysiological data.4 versions - Latest release: about 2 years ago - 1 dependent repositories - 50 downloads last month - 4 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
13 versions - Latest release: 8 months ago - 10 dependent packages - 21 dependent repositories - 8.04 thousand downloads last month - 340 stars on GitHub - 1 maintainer
fooof 1.1.0
fitting oscillations & one-over f13 versions - Latest release: 8 months ago - 10 dependent packages - 21 dependent repositories - 8.04 thousand downloads last month - 340 stars on GitHub - 1 maintainer
Top 4.2% on pypi.org
48 versions - Latest release: over 1 year ago - 3 dependent packages - 23 dependent repositories - 5.41 thousand downloads last month - 117 stars on GitHub - 2 maintainers
spikeextractors 0.9.11
Python module for extracting recorded and spike sorted extracellular data from different file typ...48 versions - Latest release: over 1 year ago - 3 dependent packages - 23 dependent repositories - 5.41 thousand downloads last month - 117 stars on GitHub - 2 maintainers
hmp 0.3.2
Package for fitting Hidden Multivariate pattern model to time-series3 versions - Latest release: 3 months ago - 66 downloads last month - 30 stars on GitHub - 1 maintainer
pykilosort 1.4.6
Python port of KiloSort 21 version - Latest release: 8 months ago - 1 dependent repositories - 31 downloads last month - 50 stars on GitHub - 1 maintainer
ephyspy 0.0.5
Package to extract summary statistics from electrophysiological data.3 versions - Latest release: 9 months ago - 14 downloads last month - 3 stars on GitHub - 1 maintainer
specparam 2.0.0rc2
Spectral parameterization.3 versions - Latest release: about 2 months ago - 250 downloads last month - 340 stars on GitHub - 1 maintainer
forked-ecephys-spike-sorting 0.1.1
Tools for spike-sorting Allen Institute Neuropixels data2 versions - Latest release: 10 months ago - 1 dependent package - 36 downloads last month - 96 stars on GitHub - 1 maintainer
tissue-detection 0.0.2
General suite of ODE solvers2 versions - Latest release: 11 months ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
sanpy-ephys 0.2.3
Whole cell current-clamp analysis.8 versions - Latest release: 6 months ago - 65 downloads last month - 13 stars on GitHub - 1 maintainer
invian 0.0.3
Package to analyze in vivo neural data2 versions - Latest release: 8 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
kilosort4 0.0.1 removed
A small example package1 version - Latest release: over 1 year ago - 28 downloads last month - 325 stars on GitHub - 2 maintainers
pte-xdf 0.1.0
A package for loading XDF files recorded with TMSi amplifiers.2 versions - Latest release: over 1 year ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
4 versions - Latest release: 7 months ago - 1 dependent package - 10 dependent repositories - 220 downloads last month - 19 stars on GitHub - 3 maintainers
viziphant 0.4.0
Viziphant is a package for the visualization of the analysisresults of electrophysiology data in ...4 versions - Latest release: 7 months ago - 1 dependent package - 10 dependent repositories - 220 downloads last month - 19 stars on GitHub - 3 maintainers
simplyfire 0.6.1
Customizable electrophysiology analysis software8 versions - Latest release: 6 months ago - 1 dependent repositories - 66 downloads last month - 1 stars on GitHub - 2 maintainers
pysiology 0.0.9.6 💰
Physiological signal processing in Python5 versions - Latest release: about 2 years ago - 1 dependent repositories - 116 downloads last month - 56 stars on GitHub - 2 maintainers
pyret 0.6.0
Tools for the analysis of neural electrophysiology data13 versions - Latest release: almost 6 years ago - 2 dependent repositories - 112 downloads last month - 35 stars on GitHub - 2 maintainers
pydread 0.0a1
Wrapper of C library for .d file reading7 versions - Latest release: over 2 years ago - 2 dependent repositories - 233 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
63 versions - Latest release: 10 months ago - 7 dependent packages - 19 dependent repositories - 1.73 thousand downloads last month - 95 stars on GitHub - 1 maintainer
pyabf 2.3.8
Python library for reading files in Axon Binary Format (ABF)63 versions - Latest release: 10 months ago - 7 dependent packages - 19 dependent repositories - 1.73 thousand downloads last month - 95 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
22 versions - Latest release: over 7 years ago - 2 dependent packages - 9 dependent repositories - 319 downloads last month - 2 maintainers
phy 1.0.9
Spike sorting and ephys data analysis for 1000 channels and beyond22 versions - Latest release: over 7 years ago - 2 dependent packages - 9 dependent repositories - 319 downloads last month - 2 maintainers
orange3-mne 1.0.13
Electrophysiological data processing widgets for Orange 3 based on the MNE for Python library.12 versions - Latest release: over 1 year ago - 1 dependent repositories - 95 downloads last month - 0 stars on GitLab.com - 1 maintainer
nwb-datajoint 0.2.6
Neuroscience data pipeline for reproducible research used by Loren Frank Lab, UCSF3 versions - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 74 stars on GitHub - 1 maintainer
npyx 4.0.6
Python routines dealing with Neuropixels data.72 versions - Latest release: 17 days ago - 2 dependent repositories - 876 downloads last month - 98 stars on GitHub - 1 maintainer
neurotic 1.5.0
Curate, visualize, annotate, and share your behavioral ephys data using Python20 versions - Latest release: over 3 years ago - 1 dependent repositories - 180 downloads last month - 29 stars on GitHub - 1 maintainer
neuroglia 0.1.0
scikit-learn compatible transformers for neural data science1 version - Latest release: over 6 years ago - 1 dependent repositories - 31 downloads last month - 36 stars on GitHub - 2 maintainers
neural-activity-resource 0.1.0
Python API for the Human Brain Project Neural Activity Resource1 version - Latest release: about 6 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
mselair-aisc 0.1.4 removed
Python package for EEG sleep classification and analysis.11 versions - Latest release: about 3 years ago - 1 dependent package - 42 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
12 versions - Latest release: almost 5 years ago - 1 dependent package - 10 dependent repositories - 207 downloads last month - 28 stars on GitHub - 4 maintainers
klustakwik2 0.2.7
Clustering for high dimensional neural data12 versions - Latest release: almost 5 years ago - 1 dependent package - 10 dependent repositories - 207 downloads last month - 28 stars on GitHub - 4 maintainers
gebaspike 1.1.0
gebaSpike - GUI designed to improve manual spike sorting of in-vivo electrophysiology data.12 versions - Latest release: almost 4 years ago - 1 dependent repositories - 120 downloads last month - 1 stars on GitHub - 1 maintainer
egegsignals 1.0.6
Package for processing EGG/EGEG signals7 versions - Latest release: over 5 years ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
egegrouper 0.7.1
Tool for grouping EGEG examinations11 versions - Latest release: about 6 years ago - 1 dependent repositories - 112 downloads last month - 1 maintainer
ebosc 0.10.dev0
extended Better Oscillation Detection, implemented in python31 version - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 4 stars on GitHub - 1 maintainer
dopltech-sdk 1.0.2
Dopl Technologies SDK5 versions - Latest release: over 3 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
demounit 0.0.5
A SciUnit library for data-driven testing of neurons.4 versions - Latest release: over 4 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
demotestunit 1.2.0
A SciUnit library for data-driven testing of neurons.1 version - Latest release: about 3 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
emodel-generalisation 0.2.10
Generalisation of neuronal electrical models with MCMC12 versions - Latest release: 2 months ago - 73 downloads last month - 3 stars on GitHub - 1 maintainer
bycycle 1.1.0
Cycle-by-cycle analyses of neural oscillations.9 versions - Latest release: about 1 year ago - 2 dependent repositories - 203 downloads last month - 78 stars on GitHub - 2 maintainers
blechpy 2.2.14
Package for exrtacting, processing and analyzing Intan and OpenEphys data157 versions - Latest release: 26 days ago - 2 dependent repositories - 1.24 thousand downloads last month - 10 stars on GitHub - 2 maintainers
biosimulations-modeldb 0.0.4
Command-line program for publishing the ModelDB model repository to BioSimulations.3 versions - Latest release: about 2 years ago - 37 downloads last month - 0 stars on GitHub - 1 maintainer
biopeaks 1.4.4
A graphical user interface for feature extraction from heart- and breathing biosignals.19 versions - Latest release: over 2 years ago - 1 dependent repositories - 230 downloads last month - 56 stars on GitHub - 1 maintainer
binmsgui 1.0.4
BinMSGUI, sorts .bin data through MountainSort and exports as Tint format.5 versions - Latest release: almost 5 years ago - 74 downloads last month - 1 stars on GitHub - 2 maintainers
axopy 0.2.3
Human-computer interface experimentation library7 versions - Latest release: over 5 years ago - 2 dependent repositories - 72 downloads last month - 23 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
27 versions - Latest release: 4 months ago - 3 dependent repositories - 488 downloads last month - 222 stars on GitHub - 1 maintainer
mnelab 0.9.0
A graphical user interface for MNE27 versions - Latest release: 4 months ago - 3 dependent repositories - 488 downloads last month - 222 stars on GitHub - 1 maintainer
miv-os 0.2.4
Python software for analysis and computing framework used in MiV project.24 versions - Latest release: over 1 year ago - 1 dependent repositories - 181 downloads last month - 12 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
151 versions - Latest release: about 4 years ago - 3 dependent repositories - 1.75 thousand downloads last month - 149 stars on GitHub - 1 maintainer
neurora 1.1.1
A Python Toolbox for Multimodal Neural Data Representation Analysis151 versions - Latest release: about 4 years ago - 3 dependent repositories - 1.75 thousand downloads last month - 149 stars on GitHub - 1 maintainer
element-array-ephys 0.2.11
DataJoint Element for Extracellular Array Electrophysiology14 versions - Latest release: 11 months ago - 2 dependent repositories - 187 downloads last month - 3 stars on GitHub - 1 maintainer
openmnglab 0.3.0
A Python framework for microneurography analysis6 versions - Latest release: 7 months ago - 46 downloads last month - 0 stars on GitHub - 2 maintainers
swc-ephys 0.0.0
Manage extracellular electrophysiology analysis1 version - Latest release: 10 months ago - 14 downloads last month - 8 stars on GitHub - 1 maintainer
efelunit 2.0.3
A SciUnit library for data-driven testing of neuronal morphologies.11 versions - Latest release: over 1 year ago - 1 dependent repositories - 48 downloads last month - 0 stars on GitHub - 1 maintainer
ephypype 0.5
Python package providing pipelines for electrophysiological (EEG/MEG) data within nipype framework.8 versions - Latest release: over 1 year ago - 1 dependent repositories - 65 downloads last month - 23 stars on GitHub - 2 maintainers
brainspike 1.0.31 removed
Python toolbox for high-throughput patch-clamp analysis27 versions - Latest release: over 1 year ago - 656 downloads last month - 1 maintainer
Related Keywords
neuroscience
52
python
28
neurophysiology
9
eeg
8
spike-sorting
8
data-analysis
8
meg
6
data analysis
6
signal-processing
6
analysis
5
EEG
5
phy
4
gui
4
spikes
4
neuron
4
data
4
ecg
4
neural oscillations
4
visualization
3
ephys
3
cardiac
3
mne
3
datajoint
3
nwb
3
ecog
3
sorting
3
patch-clamp
3
computational-neuroscience
3
spikeinterface
3
spike sorting
3
axona
3
python3
3
physiology
3
electrogastroenterography
2
MEG
2
power-spectral-density
2
oscillations
2
kilosort
2
hbp
2
metadata
2
local-field-potential
2
kachery
2
neuropixels
2
lfp
2
research
2
sortingview
2
1/f
2
power spectra
2
GUI
2
microneurography
2
electrical
2
compression
2
numpy
2
zlib
2
testing
2
validation framework
2
BlueBrainProject
2
mef
2
chronometry
2
ECG
2
statistics
2
open-science
2
spike-detection
2
hacktoberfest
2
neural-recording
2
multi-electrode-array
2
detection
2
neurons
2
electrogastrography
2
tint
2
bin
2
biomedical
1
telerobotics
1
sdk
1
medicine
1
calcium-imaging
1
python-neo
1
download-manager
1
annotation-tool
1
orange3 add-on
1
abf
1
katz_lab
1
blech
1
shape
1
generalisation
1
mcmc
1
waveform
1
hacktoberfest2022
1
spike
1
signal
1
processing
1
clustering
1
klustakwik2
1
sleep-staging
1
eeg-classification
1
video-sync
1
shacl
1
nexus
1
data-management
1
data-sharing
1