Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 2.7% on pypi.org
Top 1.5% downloads on pypi.org
Top 0.3% dependent packages on pypi.org
Top 1.2% dependent repos on pypi.org
Top 5.0% forks on pypi.org
Top 2.8% docker downloads on pypi.org
Top 1.5% downloads on pypi.org
Top 0.3% dependent packages on pypi.org
Top 1.2% dependent repos on pypi.org
Top 5.0% forks on pypi.org
Top 2.8% docker downloads on pypi.org
pypi.org : pynwb
Package for working with Neurodata stored in the NWB format.
Registry
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Source
- Documentation
- JSON
purl: pkg:pypi/pynwb
Keywords: cross-platform, data-format, hdf, hdf5, neurodata-without-borders, neuroscience, nwb, nwb-n, open-data, open-science, open-source, pynwb, python, reproducible-research
License: BSD-3-Clause
Latest release: 23 days ago
First release: over 6 years ago
Dependent packages: 68
Dependent repositories: 150
Downloads: 68,657 last month
Stars: 168 on GitHub
Forks: 79 on GitHub
Docker dependents: 4
Docker downloads: 36
Total Commits: 2777
Committers: 45
Average commits per author: 61.711
Development Distribution Score (DDS): 0.413
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 23 days ago
falcon-challenge 0.3.8
27 versions - Latest release: 9 days ago - 1.01 thousand downloads last month - 1 stars on GitHub - 1 maintainerkyutils 0.1.76
kyu's utils78 versions - Latest release: 9 days ago - 938 downloads last month - 1 maintainer
pynapple 0.6.5
PYthon Neural Analysis Package Pour Laboratoires d’Excellence27 versions - Latest release: 11 days ago - 5 dependent packages - 1 dependent repositories - 712 downloads last month - 225 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
370 versions - Latest release: 13 days ago - 9 dependent packages - 27 dependent repositories - 20.1 thousand downloads last month - 63 stars on GitHub - 3 maintainers
efel 5.6.24
Electrophys Feature Extract Library (eFEL)370 versions - Latest release: 13 days ago - 9 dependent packages - 27 dependent repositories - 20.1 thousand downloads last month - 63 stars on GitHub - 3 maintainers
np-tools 0.1.22
General-purpose tools for common tasks encountered in Mindscope Neuropixels workflows.22 versions - Latest release: 16 days ago - 7 dependent packages - 1 dependent repositories - 533 downloads last month - 0 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
27 versions - Latest release: 18 days ago - 32 dependent packages - 170 dependent repositories - 104 thousand downloads last month - 306 stars on GitHub - 5 maintainers
neo 0.13.1
Neo is a package for representing electrophysiology data in Python, together with support for rea...27 versions - Latest release: 18 days ago - 32 dependent packages - 170 dependent repositories - 104 thousand downloads last month - 306 stars on GitHub - 5 maintainers
Top 8.2% on pypi.org
35 versions - Latest release: 22 days ago - 11 dependent packages - 10 dependent repositories - 29.5 thousand downloads last month - 13 stars on GitHub - 3 maintainers
nwbinspector 0.4.35
Tool to inspect NWB files for best practices compliance.35 versions - Latest release: 22 days ago - 11 dependent packages - 10 dependent repositories - 29.5 thousand downloads last month - 13 stars on GitHub - 3 maintainers
Top 5.5% on pypi.org
117 versions - Latest release: 22 days ago - 13 dependent packages - 22 dependent repositories - 30.5 thousand downloads last month - 17 stars on GitHub - 4 maintainers
dandi 0.62.0
Command line client for interaction with DANDI archive elements117 versions - Latest release: 22 days ago - 13 dependent packages - 22 dependent repositories - 30.5 thousand downloads last month - 17 stars on GitHub - 4 maintainers
npc_sessions 0.0.222
Tools and interfaces for working with behavior and epyhys sessions from the Mindscope Neuropixels...221 versions - Latest release: 23 days ago - 1.76 thousand downloads last month - 1 stars on GitHub - 1 maintainer
naplib 2.0.0
Tools and functions for neural data processing and analysis in python25 versions - Latest release: 23 days ago - 1 dependent repositories - 167 downloads last month - 17 stars on GitHub - 1 maintainer
hdmf-zarr 0.7.0
A package defining a Zarr I/O backend for HDMF12 versions - Latest release: 23 days ago - 6 dependent packages - 30.8 thousand downloads last month - 7 stars on GitHub - 2 maintainers
ndx-dynamic-routing-metadata 0.1.5
Type to store metadata for dynamic routing experiments at Allen Institute5 versions - Latest release: 25 days ago - 478 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.4% on pypi.org
30 versions - Latest release: 25 days ago - 15 dependent packages - 21 dependent repositories - 78.2 thousand downloads last month - 419 stars on GitHub - 2 maintainers
spikeinterface 0.100.6
Python toolkit for analysis, visualization, and comparison of spike sorting output30 versions - Latest release: 25 days ago - 15 dependent packages - 21 dependent repositories - 78.2 thousand downloads last month - 419 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
122 versions - Latest release: 29 days ago - 5 dependent packages - 3 dependent repositories - 1.54 thousand downloads last month - 23 stars on GitHub - 1 maintainer
sortingview 0.13.3
Web app for viewing results of ephys spike sorting122 versions - Latest release: 29 days ago - 5 dependent packages - 3 dependent repositories - 1.54 thousand downloads last month - 23 stars on GitHub - 1 maintainer
bnpm 0.5.3
A library of useful modules for data analysis.18 versions - Latest release: about 1 month ago - 289 downloads last month - 2 stars on GitHub - 1 maintainer
spyglass-neuro 0.5.2
Neuroscience data analysis framework for reproducible research23 versions - Latest release: about 1 month ago - 1 dependent repositories - 489 downloads last month - 78 stars on GitHub - 3 maintainers
Top 9.9% on pypi.org
17 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 18 thousand downloads last month - 11 stars on GitHub - 4 maintainers
roiextractors 0.5.8
Python module for extracting optical physiology ROIs and traces for various file types and formats17 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 18 thousand downloads last month - 11 stars on GitHub - 4 maintainers
optinist 1.2.1
Calcium Imaging Pipeline Tool14 versions - Latest release: about 1 month ago - 177 downloads last month - 33 stars on GitHub - 1 maintainer
sleap-io 0.1.0
Standalone utilities for working with pose data from SLEAP and other tools.18 versions - Latest release: about 1 month ago - 4 dependent packages - 19.8 thousand downloads last month - 11 stars on GitHub - 1 maintainer
astrocast 0.4.2
Package to analyze calcium fluorescence events in astrocytes33 versions - Latest release: about 1 month ago - 242 downloads last month - 1 maintainer
lincbrain-cli 0.8.5
Command line client for interaction with LINC Brain archive elements16 versions - Latest release: about 2 months ago - 128 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
65 versions - Latest release: about 2 months ago - 2 dependent repositories - 1.08 thousand downloads last month - 377 stars on GitHub - 2 maintainers
sleap 1.4.0
SLEAP (Social LEAP Estimates Animal Poses) is a deep learning framework for animal pose tracking.65 versions - Latest release: about 2 months ago - 2 dependent repositories - 1.08 thousand downloads last month - 377 stars on GitHub - 2 maintainers
systems-neuro-browser 0.1.1
Systems Neuro Browser12 versions - Latest release: about 2 months ago - 40 downloads last month - 23 stars on GitHub - 1 maintainer
nwb4fp 0.5.7
Description of my package124 versions - Latest release: about 2 months ago - 1 dependent package - 4.25 thousand downloads last month - 1 stars on GitHub - 1 maintainer
ndx-photometry 0.4.0
extension for fiber photometry data3 versions - Latest release: about 2 months ago - 1 dependent package - 88 downloads last month - 0 stars on GitHub - 3 maintainers
suite2p-haisslab 0.14.12
Pipeline for calcium imaging9 versions - Latest release: about 2 months ago - 1 dependent package - 632 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.0% on pypi.org
17 versions - Latest release: 2 months ago - 6 dependent packages - 8 dependent repositories - 5.44 thousand downloads last month - 41 stars on GitHub - 2 maintainers
neuroconv 0.4.8
Convert data from proprietary formats to NWB format.17 versions - Latest release: 2 months ago - 6 dependent packages - 8 dependent repositories - 5.44 thousand downloads last month - 41 stars on GitHub - 2 maintainers
trodes-to-nwb 0.1.4
A python package to convert SpikeGadgets data to NWB5 versions - Latest release: 2 months ago - 56 downloads last month - 2 stars on GitHub - 2 maintainers
Top 5.2% on pypi.org
90 versions - Latest release: 2 months ago - 1 dependent package - 15 dependent repositories - 1.84 thousand downloads last month - 306 stars on GitHub - 2 maintainers
suite2p 0.14.4
Pipeline for calcium imaging90 versions - Latest release: 2 months ago - 1 dependent package - 15 dependent repositories - 1.84 thousand downloads last month - 306 stars on GitHub - 2 maintainers
ndx-turner-metadata 0.1.0
The NWB extension for storing Turner lab specific metadata1 version - Latest release: 3 months ago - 31 downloads last month - 5 stars on GitHub - 2 maintainers
nwb4fprobe 0.1.9
Description of my package11 versions - Latest release: 3 months ago - 1 dependent package - 72 downloads last month - 0 stars on GitHub - 1 maintainer
ndx-photostim 0.0.4
Holographic photostimulation extension to NWB standard4 versions - Latest release: 3 months ago - 33 downloads last month - 0 stars on GitHub - 1 maintainer
expipe-plugin-cinpla 0.1.5
Expipe plugins for the CINPLA lab.6 versions - Latest release: 3 months ago - 72 downloads last month - 1 stars on GitHub - 1 maintainer
jnormcorre 1.0.0
Jax-accelerated implementation of normcorre8 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 48 downloads last month - 1 maintainer
ethome-ml 0.6.2
Tools for machine learning of animal behavior.10 versions - Latest release: 4 months ago - 59 downloads last month - 11 stars on GitHub - 1 maintainer
ndx-multichannel-volume 0.1.12
extension to allow use of multichannel volumetric images13 versions - Latest release: 4 months ago - 1 dependent repositories - 81 downloads last month - 0 stars on GitHub - 1 maintainer
simply-nwb 0.6.2
Common NWB use cases and simplified interface for common usage23 versions - Latest release: 4 months ago - 1 dependent repositories - 168 downloads last month - 1 stars on GitHub - 2 maintainers
auto-pi-lot 0.5.0
Distributed behavioral experiments14 versions - Latest release: 4 months ago - 1 dependent repositories - 76 downloads last month - 87 stars on GitHub - 1 maintainer
nlb-tools 0.0.3
Python tools for participating in Neural Latents Benchmark '213 versions - Latest release: 4 months ago - 1 dependent package - 178 downloads last month - 52 stars on GitHub - 1 maintainer
lincbrain 1.0.4 removed
Command line client for interaction with LINC Brain archive elements16 versions - Latest release: 5 months ago - 267 downloads last month - 0 stars on GitHub - 1 maintainer
ndx-pinto-metadata 0.1.2
The NWB extension for storing ViRMEN experimental metadata for the Pinto lab.2 versions - Latest release: 6 months ago - 31 downloads last month - 5 stars on GitHub - 3 maintainers
Top 3.2% on pypi.org
80 versions - Latest release: 6 months ago - 21 dependent packages - 40 dependent repositories - 3.27 thousand downloads last month - 327 stars on GitHub - 1 maintainer
allensdk 2.16.2
core libraries for the allensdk.80 versions - Latest release: 6 months ago - 21 dependent packages - 40 dependent repositories - 3.27 thousand downloads last month - 327 stars on GitHub - 1 maintainer
cagraph 0.0.12
A package to generate graphs from calcium imaging data of neural activity.8 versions - Latest release: 7 months ago - 68 downloads last month - 5 stars on GitHub - 1 maintainer
esi-oephys2nwb 0.5
Export binary Open Ephys data to NWB 2.x2 versions - Latest release: 7 months ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
nwbmatic 0.1.2
NWB creator from various data streams3 versions - Latest release: 7 months ago - 28 downloads last month - 2 stars on GitHub - 1 maintainer
esi-syncopy 2023.9
A toolkit for user-friendly large-scale electrophysiology data analysis. Syncopy is compatible wi...9 versions - Latest release: 8 months ago - 1 dependent repositories - 107 downloads last month - 37 stars on GitHub - 1 maintainer
ndx-depth-moseq 0.1.1
Extension for MoSeq-extract output2 versions - Latest release: 9 months ago - 1 dependent package - 44 downloads last month - 5 stars on GitHub - 2 maintainers
ndx-whisk 0.1.1
NWB extension to store whisker tracking measurements computed with Whisk (Janelia Whisker Tracker...1 version - Latest release: 10 months ago - 18 downloads last month - 5 stars on GitHub - 1 maintainer
simuran 23.8.0
Simultaneous Multi-region Analysis supported with a network style2 versions - Latest release: 10 months ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
ndx-probeinterface 0.1.0
Extension for defining neural probes in the probeinterface format1 version - Latest release: 10 months ago - 13 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.3% on pypi.org
28 versions - Latest release: 10 months ago - 5 dependent packages - 20 dependent repositories - 4.41 thousand downloads last month - 48 stars on GitHub - 3 maintainers
nwbwidgets 0.11.3
This is nwbwidgets, widgets for viewing the contents of a NWB-file in Jupyter Notebooks using ipy...28 versions - Latest release: 10 months ago - 5 dependent packages - 20 dependent repositories - 4.41 thousand downloads last month - 48 stars on GitHub - 3 maintainers
np-nwb 0.1.2
Tools for quickly generating `.nwb` files from non-standard Mindscope Neuropixels experiments.2 versions - Latest release: 11 months ago - 23 downloads last month - 1 maintainer
element-array-ephys 0.2.11
DataJoint Element for Extracellular Array Electrophysiology14 versions - Latest release: 11 months ago - 2 dependent repositories - 187 downloads last month - 3 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
10 versions - Latest release: 11 months ago - 1 dependent package - 7 dependent repositories - 161 downloads last month - 24 stars on GitHub - 1 maintainer
ipfx 1.0.8
Intrinsic Physiology Feature Extractor (IPFX) - tool for computing neuronal features from the int...10 versions - Latest release: 11 months ago - 1 dependent package - 7 dependent repositories - 161 downloads last month - 24 stars on GitHub - 1 maintainer
ndx-miniscope 0.5.1
Represent metadata for Miniscope acquisition system.7 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 17.1 thousand downloads last month - 3 stars on GitHub - 3 maintainers
eats-worm 0.0.3
Method for extracting GCaMP signal from volumetric imaging recordings1 version - Latest release: 11 months ago - 23 downloads last month - 1 stars on GitHub - 1 maintainer
foco-improc 0.0.0
standalone repository for image processing algorithm implementations1 version - Latest release: 11 months ago - 2 dependent packages - 14 downloads last month - 1 maintainer
element-animal 0.1.8
DataJoint Element for Animal Management7 versions - Latest release: 11 months ago - 1 dependent package - 14 dependent repositories - 203 downloads last month - 2 stars on GitHub - 1 maintainer
ndx-odor-metadata 0.1.1
NWB Extension for documenting odor stimulus metadata2 versions - Latest release: about 1 year ago - 12 downloads last month - 1 maintainer
carnn 0.0.1
A package to generate recurrent neural networks from calcium imaging data of neural activity.1 version - Latest release: about 1 year ago - 5 downloads last month - 0 stars on GitHub - 1 maintainer
ndx-acquisition-module 0.1.2
NWB extension to add acquisition module5 versions - Latest release: about 1 year ago - 6 downloads last month - 1 maintainer
spikeinterface-poetry 4.1.0 💰
Poetry packaging with extras for working with spikeinterface11 versions - Latest release: over 1 year ago - 92 downloads last month - 1 stars on GitHub - 1 maintainer
ndx-ibl 0.1.0
IBL sessions specific metadata1 version - Latest release: over 1 year ago - 14 downloads last month - 1 maintainer
physion 0.1.1
Vision Physiology Software4 versions - Latest release: over 1 year ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.2% on pypi.org
48 versions - Latest release: over 1 year ago - 3 dependent packages - 23 dependent repositories - 5.41 thousand downloads last month - 117 stars on GitHub - 2 maintainers
spikeextractors 0.9.11
Python module for extracting recorded and spike sorted extracellular data from different file typ...48 versions - Latest release: over 1 year ago - 3 dependent packages - 23 dependent repositories - 5.41 thousand downloads last month - 117 stars on GitHub - 2 maintainers
ndx-hierarchical-behavioral-data 0.1.2
NWB extensions for storing hierarchical behavioral data3 versions - Latest release: over 1 year ago - 2 dependent repositories - 44 downloads last month - 0 stars on GitHub - 3 maintainers
ndx-extract 0.2.0
NWB extension for storage of parameters and output of EXTRACT pipeline.2 versions - Latest release: over 1 year ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.0% on pypi.org
2 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 17.3 thousand downloads last month - 5 stars on GitHub - 3 maintainers
ndx-sound 0.2.0
Represent acoustic stimuli and responses2 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 17.3 thousand downloads last month - 5 stars on GitHub - 3 maintainers