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Top 1.3% on pypi.org
Top 0.6% downloads on pypi.org
Top 0.2% dependent packages on pypi.org
Top 0.4% dependent repos on pypi.org
Top 3.2% forks on pypi.org
Top 1.3% docker downloads on pypi.org

pypi.org : python-igraph

High performance graph data structures and algorithms (legacy package)

Registry - Source - Homepage - Documentation - JSON
purl: pkg:pypi/python-igraph
Keywords: graph , network , mathematics , math , graph theory , discrete mathematics , complex-networks , graph-algorithms , graph-theory , network-analysis , network-graph , python
License: GPL-2.0
Latest release: 6 months ago
First release: about 17 years ago
Dependent packages: 114
Dependent repositories: 770
Downloads: 217,573 last month
Stars: 1,301 on GitHub
Forks: 249 on GitHub
Docker dependents: 41
Docker downloads: 2,895
Total Commits: 2602
Committers: 79
Average commits per author: 32.937
Development Distribution Score (DDS): 0.493
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Funding links: https://github.com/sponsors/igraph, https://opencollective.com/igraph
Last synced: 1 day ago

Top 2.9% on pypi.org
graphistry 0.36.1 💰
A visual graph analytics library for extracting, transforming, displaying, and sharing big graphs...
198 versions - Latest release: 2 days ago - 3 dependent packages - 29 dependent repositories - 25.2 thousand downloads last month - 2,238 stars on GitHub - 1 maintainer
Top 7.6% on pypi.org
py4cytoscape 1.12.0
Cytoscape Automation API
21 versions - Latest release: 6 days ago - 3 dependent packages - 8 dependent repositories - 1.71 thousand downloads last month - 80 stars on GitHub - 1 maintainer
convexgating 1.0.0
ConvexGating is a Python tool to infer optimal gating strategies for flow cytometry and cyTOF data.
2 versions - Latest release: 14 days ago - 57 downloads last month - 11 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
cellrank 2.0.7
CellRank: dynamics from multi-view single-cell data
35 versions - Latest release: 17 days ago - 5 dependent packages - 5 dependent repositories - 3.58 thousand downloads last month - 375 stars on GitHub - 3 maintainers
Top 1.2% on pypi.org
scanpy 1.11.1
Single-Cell Analysis in Python.
85 versions - Latest release: 24 days ago - 416 dependent packages - 493 dependent repositories - 221 thousand downloads last month - 1,778 stars on GitHub - 3 maintainers
textnets 0.10.3
Automated text analysis with networks
37 versions - Latest release: 27 days ago - 1 dependent repositories - 8.01 thousand downloads last month - 284 stars on GitHub - 1 maintainer
pegasuspy 1.10.2
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells
45 versions - Latest release: 28 days ago - 1 dependent repositories - 3.36 thousand downloads last month - 86 stars on GitHub - 3 maintainers
spateo-release 1.1.1
Spatiotemporal modeling of molecular holograms
5 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 436 downloads last month - 146 stars on GitHub - 2 maintainers
semibin 2.2.0
Metagenomic binning with siamese neural networks
23 versions - Latest release: about 1 month ago - 1 dependent repositories - 464 downloads last month - 129 stars on GitHub - 1 maintainer
yellowbox 0.8.9
Blackboxing docker containers using Python
45 versions - Latest release: about 1 month ago - 2 dependent packages - 4 dependent repositories - 29.6 thousand downloads last month - 6 stars on GitHub - 2 maintainers
metiforst 0.5
METI: Deep profiling of tumor ecosystems by integrating cell morphology and spatial transcriptomics
5 versions - Latest release: about 1 month ago - 551 downloads last month - 22 stars on GitHub - 1 maintainer
Top 5.4% on pypi.org
scirpy 0.22.0
Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
41 versions - Latest release: about 2 months ago - 4 dependent packages - 6 dependent repositories - 2.96 thousand downloads last month - 212 stars on GitHub - 2 maintainers
Top 5.8% on pypi.org
gcastle 1.0.4
gCastle is the fundamental package for causal structure learning with Python.
9 versions - Latest release: about 2 months ago - 3 dependent repositories - 2.15 thousand downloads last month - 1,025 stars on GitHub - 2 maintainers
pyliger 0.2.4
The Python version of LIGER package.
12 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 637 downloads last month - 29 stars on GitHub - 2 maintainers
Top 1.9% on pypi.org
scvi-tools 1.3.0
Deep probabilistic analysis of single-cell omics data.
89 versions - Latest release: about 2 months ago - 43 dependent packages - 41 dependent repositories - 38.9 thousand downloads last month - 1,362 stars on GitHub - 5 maintainers
Top 4.3% on pypi.org
hypernetx 2.4.0
HyperNetX is a Python library for the creation and study of hypergraphs.
50 versions - Latest release: about 2 months ago - 3 dependent packages - 8 dependent repositories - 8.58 thousand downloads last month - 601 stars on GitHub - 3 maintainers
pimmi 0.4.0
Python IMage MIning
14 versions - Latest release: 3 months ago - 1 dependent repositories - 560 downloads last month - 11 stars on GitHub - 1 maintainer
Top 5.7% on pypi.org
navis 1.10.0
Neuron Analysis and Visualization library
38 versions - Latest release: 3 months ago - 9 dependent packages - 12 dependent repositories - 2.45 thousand downloads last month - 80 stars on GitHub - 1 maintainer
Top 8.4% on pypi.org
explorerscript 0.2.3 💰
ExplorerScript and SSBScript: Script languages for decompiled SSB (Pokémon Mystery Dungeon Explor...
18 versions - Latest release: 3 months ago - 4 dependent packages - 7 dependent repositories - 3.77 thousand downloads last month - 18 stars on GitHub - 1 maintainer
famegui 0.9.0
Graphical user interface to the FAME modelling framework
9 versions - Latest release: 3 months ago - 1 dependent repositories - 169 downloads last month - 2 stars on gitlab.com - 2 maintainers
drive-ibd 2.7.14
cli tool to identify networks of individuals who share IBD segments overlapping loci of interest
48 versions - Latest release: 3 months ago - 1.73 thousand downloads last month - 0 stars on GitHub - 2 maintainers
Top 3.8% on pypi.org
scib 1.1.7
Evaluating single-cell data integration methods
13 versions - Latest release: 3 months ago - 4 dependent packages - 5 dependent repositories - 11.1 thousand downloads last month - 331 stars on GitHub - 1 maintainer
avici 1.0.7
Amortized Inference for Causal Structure Learning
8 versions - Latest release: 4 months ago - 1 dependent repositories - 259 downloads last month - 61 stars on GitHub - 1 maintainer
nismod-snail 0.5.4
The spatial networks impact assessment library
12 versions - Latest release: 4 months ago - 1 dependent repositories - 6.99 thousand downloads last month - 9 stars on GitHub - 2 maintainers
Top 8.9% on pypi.org
snapatac2 2.8.0
SnapATAC2: Single-cell epigenomics analysis pipeline
29 versions - Latest release: 4 months ago - 2 dependent packages - 1 dependent repositories - 5.66 thousand downloads last month - 256 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
netket 3.15.2
Netket : Machine Learning toolbox for many-body quantum systems.
80 versions - Latest release: 4 months ago - 5 dependent repositories - 3.99 thousand downloads last month - 517 stars on GitHub - 2 maintainers
Top 3.0% on pypi.org
scvelo 0.3.3
RNA velocity generalized through dynamical modeling
34 versions - Latest release: 5 months ago - 28 dependent packages - 34 dependent repositories - 7.62 thousand downloads last month - 431 stars on GitHub - 2 maintainers
divexplorer 0.2.6
Analyze Pandas dataframes, and other tabular data (csv), to find subgroups of data with propertie...
8 versions - Latest release: 5 months ago - 1 dependent repositories - 522 downloads last month - 6 stars on GitHub - 3 maintainers
scunagi 0.5.1
UNAGI: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Co...
9 versions - Latest release: 5 months ago - 210 downloads last month - 6 stars on GitHub - 1 maintainer
celloracle 0.20.0
in silico gene perturbation analysis and GRN analysis with single cell data
21 versions - Latest release: 5 months ago - 1 dependent repositories - 1.7 thousand downloads last month - 287 stars on GitHub - 1 maintainer
twitterexplorer 0.7.2
A Python tool for interactive network visualizations of Twitter data.
11 versions - Latest release: 6 months ago - 375 downloads last month - 71 stars on GitHub - 1 maintainer
scfates 1.0.9
scanpy compatible python suite for fast tree inference and advanced pseudotime downstream analysis
27 versions - Latest release: 6 months ago - 1 dependent repositories - 1.48 thousand downloads last month - 52 stars on GitHub - 1 maintainer
scdiffusion 0.3.1
scDiffusion(Single-Cell graph neural Diffusion) is a physics-informed graph generative model to d...
5 versions - Latest release: 6 months ago - 98 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.1% on pypi.org
energyflow 1.4.0
Python package for the Energy Flow suite of particle physics tools
53 versions - Latest release: 6 months ago - 2 dependent packages - 16 dependent repositories - 1.72 thousand downloads last month - 40 stars on GitHub - 3 maintainers
modularitypruning 1.4.1
Pruning tool to identify small subsets of network partitions that are significant from the perspe...
16 versions - Latest release: 6 months ago - 1 dependent repositories - 558 downloads last month - 16 stars on GitHub - 1 maintainer
gplas 1.0.0
Binning plasmid-predicted contigs using short-read graphs
2 versions - Latest release: 6 months ago - 49 downloads last month - 1 stars on gitlab.com - 2 maintainers
pycinema 3.1.0
Cinema scientific toolset.
11 versions - Latest release: 6 months ago - 1 dependent repositories - 182 downloads last month - 1 stars on GitHub - 1 maintainer
besca 2.5.5
Collection of BEDA internal python functions for analysing single cell RNAseq data.
6 versions - Latest release: 7 months ago - 1 dependent repositories - 207 downloads last month - 49 stars on GitHub - 3 maintainers
Top 7.3% on pypi.org
cell2location 0.1.4
cell2location: High-throughput spatial mapping of cell types
5 versions - Latest release: 7 months ago - 3 dependent packages - 1 dependent repositories - 1.53 thousand downloads last month - 327 stars on GitHub - 2 maintainers
protgraph 0.3.11
ProtGraph, a graph generator for proteins.
20 versions - Latest release: 7 months ago - 1 dependent repositories - 434 downloads last month - 12 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
pypath-omnipath 0.16.17
Molecular signaling prior knowledge processing
29 versions - Latest release: 7 months ago - 1 dependent repositories - 952 downloads last month - 140 stars on GitHub - 1 maintainer
pyvia 0.2.4
trajectory inference
103 versions - Latest release: 7 months ago - 1 dependent repositories - 2.39 thousand downloads last month - 73 stars on GitHub - 1 maintainer
elpigraph-python 0.3.2
Python implementation of the ElPiGraph algorithm with cpu and gpu support
15 versions - Latest release: 7 months ago - 2 dependent packages - 4 dependent repositories - 1.06 thousand downloads last month - 17 stars on GitHub - 1 maintainer
graphbin2 1.3.3
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
6 versions - Latest release: 7 months ago - 262 downloads last month - 33 stars on GitHub - 1 maintainer
cellsnap 0.1.0
A package for enhancing single-cell population delineation by integrating cross-domain information.
9 versions - Latest release: 7 months ago - 321 downloads last month - 14 stars on GitHub - 1 maintainer
Top 6.2% on pypi.org
dynamo-release 1.4.1
Mapping Vector Field of Single Cells
18 versions - Latest release: 8 months ago - 1 dependent package - 3 dependent repositories - 1.2 thousand downloads last month - 416 stars on GitHub - 1 maintainer
graphbin 1.7.4
GraphBin: Refined binning of metagenomic contigs using assembly graphs.
7 versions - Latest release: 8 months ago - 1 dependent repositories - 361 downloads last month - 91 stars on GitHub - 1 maintainer
cpa-tools 0.8.8
Compositional Perturbation Autoencoder (CPA)
35 versions - Latest release: 8 months ago - 1 dependent repositories - 1.01 thousand downloads last month - 94 stars on GitHub - 2 maintainers
arcimboldo 1.0.25
a suite of programs for x-ray diffraction structure solution
22 versions - Latest release: 9 months ago - 534 downloads last month - 3 maintainers
biocomet 0.1.11
A brief description of the biocomet package
10 versions - Latest release: 9 months ago - 222 downloads last month - 0 stars on GitHub - 1 maintainer
cell-blast 0.5.1
Single-cell transcriptome querying tool
9 versions - Latest release: 9 months ago - 374 downloads last month - 91 stars on GitHub - 1 maintainer
metachat 0.0.3
Spatial metabolic communication flow of single cells.
3 versions - Latest release: 10 months ago - 138 downloads last month - 2 stars on GitHub - 1 maintainer
samba-metric 0.0.14
14 versions - Latest release: 10 months ago - 1 dependent package - 388 downloads last month - 0 stars on GitHub - 1 maintainer
nngt 2.8.0
Python package to generate and study graphs and detailed spatial or biological networks.
31 versions - Latest release: 10 months ago - 1 dependent repositories - 1.63 thousand downloads last month - 15 stars on GitHub - 2 maintainers
imputehifi 0.1.3
3 versions - Latest release: 11 months ago - 92 downloads last month - 1 maintainer
seekr 2.0.2
Count small kmer frequencies in nucleotide sequences.
27 versions - Latest release: 11 months ago - 1 dependent repositories - 702 downloads last month - 24 stars on GitHub - 4 maintainers
Top 3.4% on pypi.org
giotto-tda 0.6.2
Toolbox for Machine Learning using Topological Data Analysis.
12 versions - Latest release: 11 months ago - 7 dependent packages - 19 dependent repositories - 7.87 thousand downloads last month - 852 stars on GitHub - 1 maintainer
fa2-modified 0.3.10
The fastest ForceAtlas2 algorithm for Python (and NetworkX)
6 versions - Latest release: 11 months ago - 2 dependent packages - 2.82 thousand downloads last month - 11 stars on GitHub - 1 maintainer
parc 0.40
23 versions - Latest release: 11 months ago - 1 dependent package - 2 dependent repositories - 796 downloads last month - 42 stars on GitHub - 1 maintainer
vascpy 0.1.2
Vasculature API
4 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 105 downloads last month - 2 stars on GitHub - 2 maintainers
Top 3.2% on pypi.org
cdlib 0.4.0
Community Discovery Library
20 versions - Latest release: 11 months ago - 8 dependent packages - 27 dependent repositories - 8.28 thousand downloads last month - 339 stars on GitHub - 1 maintainer
mrvi 1.0.1
Multi-resolution Variational Inference
5 versions - Latest release: 12 months ago - 220 downloads last month - 4 stars on GitHub - 3 maintainers
spinqit 0.2.3
SpinQ Quantum Software Development Kit
6 versions - Latest release: about 1 year ago - 584 downloads last month - 1 maintainer
flattableanalysis 0.0.2
Architectural analysis of a flat table. Discovering data from technical point of view.
2 versions - Latest release: about 1 year ago - 101 downloads last month - 1 maintainer
Top 6.2% on pypi.org
skeletor 1.3.0
Python 3 library to extract skeletons from 3D meshes
8 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 2.49 thousand downloads last month - 223 stars on GitHub - 1 maintainer
tpdistance 0.1
Package to compute TP distances between nodes in a network.
1 version - Latest release: about 1 year ago - 66 downloads last month - 1 maintainer
coscst 0.1
Single-cell RNA sequencing data excels in providing high sequencing depth and precision at the si...
1 version - Latest release: about 1 year ago - 57 downloads last month - 0 stars on GitHub - 1 maintainer
small-world-propensity 0.0.19
A small python package designed to calculate the small-world propensity of a weighted, undirected...
19 versions - Latest release: about 1 year ago - 669 downloads last month - 5 stars on GitHub - 1 maintainer
Top 1.3% on pypi.org
louvain 0.8.2
louvain is a general algorithm for methods of community detection in large networks.
16 versions - Latest release: about 1 year ago - 48 dependent packages - 122 dependent repositories - 26 thousand downloads last month - 1 maintainer
sctoolsgw 0.0.4
convenience wrappers around common scanpy functions and workflows
4 versions - Latest release: about 1 year ago - 119 downloads last month - 1 stars on GitHub - 1 maintainer
velovi 0.3.1
Estimation of RNA velocity with variational inference.
6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 328 downloads last month - 36 stars on GitHub - 1 maintainer
graph-express 1.0a3
Python package for the analysis and visualization of network graphs.
6 versions - Latest release: about 1 year ago - 156 downloads last month - 0 stars on GitHub - 1 maintainer
configmodel-mcmc 0.1.1
A tool for sampling networks from the Configuration model
13 versions - Latest release: about 1 year ago - 323 downloads last month - 1 maintainer
uglypty 0.9.4
UglyPTY - A PyQt6-based SSH, Serial Console, Mapping and Automation Tooling.
40 versions - Latest release: about 1 year ago - 864 downloads last month - 4 stars on GitHub - 1 maintainer
Top 1.0% on pypi.org
leidenalg 0.10.2
Leiden is a general algorithm for methods of community detection in large networks.
16 versions - Latest release: over 1 year ago - 153 dependent packages - 206 dependent repositories - 110 thousand downloads last month - 542 stars on GitHub - 1 maintainer
scbean 0.5.6
integration
15 versions - Latest release: over 1 year ago - 2 dependent repositories - 424 downloads last month - 16 stars on GitHub - 1 maintainer
traffic-flow 0.2.4
Macroscopic transport modelling; forecasting traffic flows on roads
4 versions - Latest release: over 1 year ago - 163 downloads last month - 8 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
lingpy 2.6.13
Python library for quantitative tasks in historical linguistics
19 versions - Latest release: over 1 year ago - 7 dependent packages - 147 dependent repositories - 3.5 thousand downloads last month - 121 stars on GitHub - 2 maintainers
pydance 1.0.1
Deep Learning for Single-cell Analysis
4 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 387 downloads last month - 357 stars on GitHub - 2 maintainers
dibs-lib 1.3.3
DiBS: Differentiable Bayesian Structure Learning
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 537 downloads last month - 47 stars on GitHub - 1 maintainer
pyintergraph 1.3.3
Convert Python-Graph-Objects between networkx, python-igraph and graph-tools.
8 versions - Latest release: over 1 year ago - 4 dependent repositories - 752 downloads last month - 9 stars on GitHub - 1 maintainer
pystad 0.2.11
Dimensionality reduction through Simplified Topological Abstraction of Data
14 versions - Latest release: over 1 year ago - 1 dependent repositories - 401 downloads last month - 1 maintainer
orthogram 0.8.2
Draw block diagrams.
23 versions - Latest release: over 1 year ago - 1 dependent repositories - 619 downloads last month - 7 stars on GitHub - 1 maintainer
causalbench 1.1.2
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 202 downloads last month - 1 maintainer
manyworlds 0.5.0
Organize BDD scenarios as hierarchical trees for more concise and expressive feature files
8 versions - Latest release: over 1 year ago - 305 downloads last month - 2 stars on GitHub - 1 maintainer
pcalf 1.2.6
Search calcyanin in a set of amino acid sequences
11 versions - Latest release: over 1 year ago - 512 downloads last month - 1 stars on GitHub - 1 maintainer
nest-analysis 1.0.4
NeST method for identifying nested structure in spatial transcriptomic data
5 versions - Latest release: over 1 year ago - 231 downloads last month - 1 maintainer
stereoalign 0.0.3 💰
A toolkit package of data integration
3 versions - Latest release: over 1 year ago - 63 downloads last month - 13,542 stars on GitHub - 1 maintainer
corankco 7.2.0
Kemeny-Young method for rank aggregation of incomplete rankings with ties
21 versions - Latest release: over 1 year ago - 1 dependent repositories - 398 downloads last month - 4 stars on GitHub - 1 maintainer
stellargraph-mvisani 1.3.1b0
Python library for machine learning on graphs
2 versions - Latest release: over 1 year ago - 73 downloads last month - 2,994 stars on GitHub - 1 maintainer
simpleppt 1.1.4
Python implementation of SimplePPT algorithm, with GPU acceleration
6 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 1.21 thousand downloads last month - 1 stars on GitHub - 1 maintainer
diomindmap 0.1.5
Create Draw.io mind map diagrams with indented text files.
6 versions - Latest release: over 1 year ago - 226 downloads last month - 1 stars on GitHub - 1 maintainer
partition-igraph 0.0.7
Adds ensemble clustering (ecg) and graph-aware measures (gam) to igraph.
6 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 230 downloads last month - 23 stars on GitHub - 1 maintainer
sincei 0.3.1
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data
4 versions - Latest release: almost 2 years ago - 106 downloads last month - 1 stars on GitHub - 1 maintainer
angelcommunity 2.0.0
Community Discovery algorithm
1 version - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 6.42 thousand downloads last month - 7 stars on GitHub - 1 maintainer
hcm-causal 0.2.1
hcm_causal Python Package
5 versions - Latest release: almost 2 years ago - 243 downloads last month - 1 maintainer
meta-matching-tool 1.8.0
An integrated deep learning framework for the interpretation of untargeted metabolomics data
17 versions - Latest release: almost 2 years ago - 54 downloads last month - 0 stars on GitHub - 1 maintainer
pythonabm 0.3.3
Framework for building Agent-Based Models (ABMs) in Python
22 versions - Latest release: almost 2 years ago - 628 downloads last month - 1 stars on GitHub - 1 maintainer
summerepi 3.6.4
Summer is a compartmental disease modelling framework, written in Python. It provides a high-leve...
52 versions - Latest release: almost 2 years ago - 1 dependent repositories - 1.57 thousand downloads last month - 7 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
spagcn 1.2.7
SpaGCN: Integrating gene expression and histology to identify spatial domains and spatially varia...
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 668 downloads last month - 186 stars on GitHub - 1 maintainer
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