Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 1.4% on pypi.org
Top 2.9% downloads on pypi.org
Top 0.3% dependent packages on pypi.org
Top 1.2% dependent repos on pypi.org
Top 1.1% docker downloads on pypi.org
Top 2.9% downloads on pypi.org
Top 0.3% dependent packages on pypi.org
Top 1.2% dependent repos on pypi.org
Top 1.1% docker downloads on pypi.org
pypi.org : scikit-bio
Data structures, algorithms and educational resources for bioinformatics.
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purl: pkg:pypi/scikit-bio
Keywords: bioinformatics, computational-biology
License: BSD-3-Clause
Latest release: 2 months ago
First release: 10 months ago
Dependent packages: 43
Dependent repositories: 166
Downloads: 6,112 last month
Stars: 845 on GitHub
Forks: 266 on GitHub
Docker dependents: 18
Docker downloads: 94,190
Total Commits: 4589
Committers: 82
Average commits per author: 55.963
Development Distribution Score (DDS): 0.74
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 5 days ago
Top 5.4% on pypi.org
33 versions - Latest release: 22 days ago - 4 dependent packages - 6 dependent repositories - 2.99 thousand downloads last month - 200 stars on GitHub - 2 maintainers
scirpy 0.17.0
Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis33 versions - Latest release: 22 days ago - 4 dependent packages - 6 dependent repositories - 2.99 thousand downloads last month - 200 stars on GitHub - 2 maintainers
triglav 1.0.7
Triglav: Iterative Refinement and Selection of Stable Features Using Shapley Values8 versions - Latest release: 25 days ago - 94 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 460 downloads last month - 51 stars on GitHub - 1 maintainer
cell2cell 0.7.4
TBD38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 460 downloads last month - 51 stars on GitHub - 1 maintainer
microview 0.11.0
Generate reports from metagenomics data12 versions - Latest release: about 1 month ago - 55 downloads last month - 0 stars on GitHub - 1 maintainer
abutils 0.4.17
Utilities for analysis of adaptive immune receptor repertoire (AIRR) data37 versions - Latest release: about 1 month ago - 2 dependent packages - 4 dependent repositories - 426 downloads last month - 6 stars on GitHub - 1 maintainer
Top 9.1% on pypi.org
31 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 708 downloads last month - 85 stars on GitHub - 1 maintainer
sc-dandelion 0.3.6
sc-TCR/BCR-seq analysis tool31 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 708 downloads last month - 85 stars on GitHub - 1 maintainer
panpiper 1.0.2
Panpiper: snakemake workflow for bacterial isolate analysis5 versions - Latest release: 2 months ago - 42 downloads last month - 3 stars on GitHub - 1 maintainer
mashpit 0.9.6
A sketch-based surveillance platform9 versions - Latest release: 2 months ago - 1 dependent repositories - 32 downloads last month - 8 stars on GitHub - 1 maintainer
dysgu 1.6.3
Structural variant calling28 versions - Latest release: 2 months ago - 1 dependent repositories - 363 downloads last month - 85 stars on GitHub - 1 maintainer
Top 8.3% on pypi.org
30 versions - Latest release: 3 months ago - 8 dependent packages - 2 dependent repositories - 429 downloads last month - 1 maintainer
toolbiox 0.0.45
a biological toolkit for genome assembly, annotation and analysis that we have accumulated from o...30 versions - Latest release: 3 months ago - 8 dependent packages - 2 dependent repositories - 429 downloads last month - 1 maintainer
hitac 2.2.2
Hierarchical taxonomic classifier.51 versions - Latest release: 3 months ago - 1 dependent repositories - 497 downloads last month - 1 stars on GitLab.com - 1 maintainer
Top 8.5% on pypi.org
51 versions - Latest release: 3 months ago - 2 dependent packages - 3 dependent repositories - 467 downloads last month - 36 stars on GitHub - 1 maintainer
abstar 0.6.4
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of s...51 versions - Latest release: 3 months ago - 2 dependent packages - 3 dependent repositories - 467 downloads last month - 36 stars on GitHub - 1 maintainer
mercat2 1.4.1
versatile k-mer counter and diversity estimator for database independent property analysis (DIPA)...8 versions - Latest release: 3 months ago - 1 dependent repositories - 20 downloads last month - 10 stars on GitHub - 2 maintainers
gtnet 0.1.0
A package for running Genome Taxonomy Network predictions8 versions - Latest release: 3 months ago - 1 dependent repositories - 65 downloads last month - 1 stars on GitHub - 2 maintainers
soothsayer 2024.2.27
High-level package for (bio-)informatics34 versions - Latest release: 3 months ago - 1 dependent repositories - 89 downloads last month - 9 stars on GitHub - 1 maintainer
bacdive 1.0.0
BacDive-API - Programmatic Access to the BacDive Database6 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 159 downloads last month - 2 maintainers
gemelli 0.0.10
Robust Aitchison Tensor Decomposition for sparse count data10 versions - Latest release: 5 months ago - 1 dependent repositories - 143 downloads last month - 66 stars on GitHub - 1 maintainer
ingenannot 0.0.11
InGenAnnot: Inspection of Gene Annotation10 versions - Latest release: 5 months ago - 63 downloads last month - 1 maintainer
flight-genome 1.6.3
flight - metagenomic binner and variant clusterer.19 versions - Latest release: 5 months ago - 1 dependent repositories - 163 downloads last month - 2 stars on GitHub - 1 maintainer
covigator 2.2.3
CoVigator - Monitoring SARS-CoV-2 mutations36 versions - Latest release: 5 months ago - 1 dependent repositories - 270 downloads last month - 11 stars on GitHub - 2 maintainers
dram-bio 1.5.0
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of functio...29 versions - Latest release: 5 months ago - 1 dependent repositories - 243 downloads last month - 236 stars on GitHub - 3 maintainers
dnadb 0.14.0
A library for handling DNA files.50 versions - Latest release: 6 months ago - 222 downloads last month - 0 stars on GitHub - 1 maintainer
pymantra 1.0.2
Reaction-Centred Metabolic Network Analysis4 versions - Latest release: 7 months ago - 500 downloads last month - 4 stars on GitHub - 1 maintainer
strainge 1.3.9
Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.21 versions - Latest release: 7 months ago - 533 downloads last month - 6,279 stars on GitHub - 1 maintainer
birdman 0.2.0
Framework for differential microbiome abundance using Bayesian inference6 versions - Latest release: 7 months ago - 88 downloads last month - 22 stars on GitHub - 1 maintainer
moonstone 1.0.0
Utilities for metagenomics data analysis using machine learning.8 versions - Latest release: 8 months ago - 1 dependent repositories - 68 downloads last month - 2 maintainers
pyllelic 0.4.8
Analysis of allele-specific methylation in bisulfite DNA sequencing.24 versions - Latest release: 9 months ago - 1 dependent repositories - 101 downloads last month - 6 stars on GitHub - 1 maintainer
biotext 3.0.1.0
The biotext library offers resources for natural language processing based on bioinformatics tools14 versions - Latest release: 9 months ago - 1 dependent repositories - 50 downloads last month - 0 stars on GitHub - 1 maintainer
phylotypes 1.0.0
Group phylogenetically placed sequence variants into phylotypes7 versions - Latest release: 10 months ago - 1 dependent repositories - 21 downloads last month - 1 stars on GitHub - 1 maintainer
pymgpipe 0.16.10
Community level microbiome metabolic modeling in Python5 versions - Latest release: 11 months ago - 42 downloads last month - 6 stars on GitHub - 1 maintainer
cami-opal 1.0.12
OPAL: Open-community Profiling Assessment tooL14 versions - Latest release: 12 months ago - 173 downloads last month - 1 maintainer
pygenprop 1.3
A python library for programmatic usage of EBI InterPro Genome Properties.5 versions - Latest release: about 1 year ago - 1 dependent repositories - 20 downloads last month - 9 stars on GitHub - 1 maintainer
tcrcloud 1.4.1
TCRcloud is an AIRR visualization and comparison tool10 versions - Latest release: about 1 year ago - 1 dependent repositories - 72 downloads last month - 4 stars on GitHub - 1 maintainer
thoraxe 0.8.0
Disentangle homology relationships between exons.15 versions - Latest release: over 1 year ago - 1 dependent repositories - 90 downloads last month - 10 stars on GitHub - 1 maintainer
sccoda 0.1.9
A Dirichlet-Multinomial approach to identify compositional changes in count data.11 versions - Latest release: over 1 year ago - 1 dependent repositories - 280 downloads last month - 117 stars on GitHub - 1 maintainer
taxontabletools 1.4.8
TaxonTableTools - A comprehensive, platform-independent graphical user interface software to expl...27 versions - Latest release: over 1 year ago - 1 dependent repositories - 258 downloads last month - 1 maintainer
gfpa 1.1.0
Gene function and cell surface protein association analysis based on single-cell multiomics data.2 versions - Latest release: over 1 year ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
10 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 282 downloads last month - 43 stars on GitHub - 1 maintainer
redbiom 0.3.9
Sample search by metadata and features10 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 282 downloads last month - 43 stars on GitHub - 1 maintainer
genomics-data-index 0.9.2
Indexes genomics data (nucleotide variants, kmers, MLST) for fast querying of features.13 versions - Latest release: over 1 year ago - 1 dependent repositories - 64 downloads last month - 12 stars on GitHub - 1 maintainer
qurro 0.8.0
Visualizes differentially ranked features and log-ratios of their sample abundances10 versions - Latest release: over 1 year ago - 1 dependent repositories - 57 downloads last month - 30 stars on GitHub - 1 maintainer
metagenomix 2.6.0
metagenomix is a pipeline of pipelines to conduct metagenomic analyses on Slurm/Torque15 versions - Latest release: over 1 year ago - 115 downloads last month - 6 stars on GitHub - 1 maintainer
treecl 0.1.38
Phylogenetic Clustering Package38 versions - Latest release: over 3 years ago - 1 dependent repositories - 208 downloads last month - 24 stars on GitHub - 1 maintainer
gneiss 0.4.6
Compositional data analysis tools and visualizations11 versions - Latest release: over 4 years ago - 7 dependent repositories - 65 downloads last month - 55 stars on GitHub - 1 maintainer