Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 1.9% on pypi.org
Top 2.2% downloads on pypi.org
Top 0.4% dependent packages on pypi.org
Top 2.3% dependent repos on pypi.org
Top 2.9% forks on pypi.org
Top 1.5% docker downloads on pypi.org
Top 2.2% downloads on pypi.org
Top 0.4% dependent packages on pypi.org
Top 2.3% dependent repos on pypi.org
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pypi.org : scvi-tools
Deep probabilistic analysis of single-cell omics data.
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purl: pkg:pypi/scvi-tools
Keywords: cite-seq, deep-generative-model, deep-learning, human-cell-atlas, scrna-seq, scverse, single-cell-genomics, single-cell-rna-seq, variational-autoencoder, variational-bayes
License: Other
Latest release: 3 months ago
First release: over 3 years ago
Dependent packages: 43
Dependent repositories: 41
Downloads: 23,077 last month
Stars: 1,113 on GitHub
Forks: 336 on GitHub
Docker dependents: 10
Docker downloads: 2,965
Total Commits: 3299
Committers: 74
Average commits per author: 44.581
Development Distribution Score (DDS): 0.488
More commit stats: commits.ecosyste.ms
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Last synced: 3 days ago
hiclip 0.0.4
3 versions - Latest release: 10 days ago - 275 downloads last month - 1 maintainer
Top 8.9% on pypi.org
25 versions - Latest release: 11 days ago - 2 dependent packages - 1 dependent repositories - 2.35 thousand downloads last month - 177 stars on GitHub - 1 maintainer
snapatac2 2.6.3
SnapATAC2: Single-cell epigenomics analysis pipeline25 versions - Latest release: 11 days ago - 2 dependent packages - 1 dependent repositories - 2.35 thousand downloads last month - 177 stars on GitHub - 1 maintainer
mrvi 1.0.1
Multi-resolution Variational Inference5 versions - Latest release: 13 days ago - 344 downloads last month - 4 stars on GitHub - 3 maintainers
omicverse 1.5.9
OmicVerse: A single pipeline for exploring the entire transcriptome universe32 versions - Latest release: 19 days ago - 1 dependent repositories - 974 downloads last month - 133 stars on GitHub - 1 maintainer
panpipes 0.5.0
Panpipes - multimodal single cell pipelines7 versions - Latest release: 26 days ago - 120 downloads last month - 35 stars on GitHub - 2 maintainers
sttransfer 1.0.20
Transfer learning for spatial transcriptomics data and single-cell RNA-seq data.21 versions - Latest release: 28 days ago - 927 downloads last month - 0 stars on GitHub - 1 maintainer
pertpy 0.7.0
Perturbation Analysis in the scverse ecosystem.7 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 773 downloads last month - 67 stars on GitHub - 2 maintainers
scbutterfly 0.0.8
A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders8 versions - Latest release: about 2 months ago - 71 downloads last month - 12 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
11 versions - Latest release: about 2 months ago - 4 dependent packages - 5 dependent repositories - 11.6 thousand downloads last month - 274 stars on GitHub - 1 maintainer
scib 1.1.5
Evaluating single-cell data integration methods11 versions - Latest release: about 2 months ago - 4 dependent packages - 5 dependent repositories - 11.6 thousand downloads last month - 274 stars on GitHub - 1 maintainer
cpa-tools 0.8.7
Compositional Perturbation Autoencoder (CPA)34 versions - Latest release: about 2 months ago - 1 dependent repositories - 265 downloads last month - 76 stars on GitHub - 2 maintainers
sclift 0.0.47
File read and write operations5 versions - Latest release: 2 months ago - 13 downloads last month - 1 maintainer
Top 3.0% on pypi.org
33 versions - Latest release: 2 months ago - 28 dependent packages - 34 dependent repositories - 7.55 thousand downloads last month - 388 stars on GitHub - 2 maintainers
scvelo 0.3.2
RNA velocity generalized through dynamical modeling33 versions - Latest release: 2 months ago - 28 dependent packages - 34 dependent repositories - 7.55 thousand downloads last month - 388 stars on GitHub - 2 maintainers
pegasuspy 1.9.1
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells42 versions - Latest release: 2 months ago - 1 dependent repositories - 1.17 thousand downloads last month - 69 stars on GitHub - 3 maintainers
velovi 0.3.1
Estimation of RNA velocity with variational inference.6 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 106 downloads last month - 34 stars on GitHub - 1 maintainer
Top 8.2% on pypi.org
28 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 310 stars on GitHub - 4 maintainers
scarches 0.6.1
Transfer learning with Architecture Surgery on Single-cell data28 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.62 thousand downloads last month - 310 stars on GitHub - 4 maintainers
biolord 0.0.3
A deep generative framework for disentangling known and unknown attributes in single-cell data.3 versions - Latest release: 3 months ago - 1 dependent repositories - 81 downloads last month - 52 stars on GitHub - 1 maintainer
scib-metrics 0.5.1
Accelerated and Python-only scIB metrics19 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 2.49 thousand downloads last month - 39 stars on GitHub - 2 maintainers
scbc 0.3.2
a single-cell transcriptome Bayesian biClustering framework6 versions - Latest release: 3 months ago - 37 downloads last month - 1 stars on GitHub - 1 maintainer
scannot 0.0.6
single cell annotation6 versions - Latest release: 3 months ago - 44 downloads last month - 0 stars on GitHub - 1 maintainer
popv 0.4.2
Consensus prediction of cell type labels with popV13 versions - Latest release: 3 months ago - 1 dependent repositories - 264 downloads last month - 16 stars on GitHub - 1 maintainer
scunagi 0.2.3
A Python package for UNAGI5 versions - Latest release: 4 months ago - 33 downloads last month - 6 stars on GitHub - 1 maintainer
spacel 1.1.7
SPACEL: characterizing spatial transcriptome architectures by deep-learning11 versions - Latest release: 4 months ago - 83 downloads last month - 34 stars on GitHub - 1 maintainer
simvi 0.0.4
Spatial Interaction Modeling using Variational Inference4 versions - Latest release: 5 months ago - 34 downloads last month - 4 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
12 versions - Latest release: 6 months ago - 1 dependent repositories - 2.3 thousand downloads last month - 828 stars on GitHub - 1 maintainer
scgpt 0.2.1
Large-scale generative pretrain of single cell using transformer.12 versions - Latest release: 6 months ago - 1 dependent repositories - 2.3 thousand downloads last month - 828 stars on GitHub - 1 maintainer
velovgi 0.1.0
Graph Variational Autoencoder for scRNA-seq velocity6 versions - Latest release: 6 months ago - 28 downloads last month - 1 stars on GitHub - 1 maintainer
dcpredictor 0.0.1
transfer learning approach1 version - Latest release: 7 months ago - 15 downloads last month - 1 maintainer
pertvi 0.0.1
deep mechanistic modeling of single-cell atlas using variational inference1 version - Latest release: 7 months ago - 19 downloads last month - 3 stars on GitHub - 1 maintainer
methyl-vi 0.1.0
1 version - Latest release: 7 months ago - 16 downloads last month - 1 maintainerscrnatools 1.12.3
Tools for single cell RNA sequencing pipelines17 versions - Latest release: 7 months ago - 1 dependent repositories - 131 downloads last month - 1 maintainer
spvipes 0.0.1
Shared-private Variational Inference with Product of Experts and Supervision1 version - Latest release: 7 months ago - 16 downloads last month - 3 stars on GitHub - 1 maintainer
efaar-benchmarking 0.1.0
1 version - Latest release: 7 months ago - 1 dependent package - 89 downloads last month - 1 maintainerpyrovelocity 0.1.3
A multivariate RNA Velocity model to estimate future cell states with uncertainty using probabili...17 versions - Latest release: 9 months ago - 128 downloads last month - 35 stars on GitHub - 3 maintainers
stereoalign 0.0.3 💰
A toolkit package of data integration3 versions - Latest release: 9 months ago - 5 downloads last month - 12,404 stars on GitHub - 1 maintainer
cellcharter 0.2.0
A Python package for the identification, characterization and comparison of spatial clusters from...5 versions - Latest release: 9 months ago - 231 downloads last month - 60 stars on GitHub - 1 maintainer
deepcellpredictor 0.9.6 removed
transfer learning approach16 versions - Latest release: 10 months ago - 71 downloads last month - 1 maintainer
sobolev-alignment 1.0.0
Sobolev alignment of deep probabilistic models for comparing single cell profiles1 version - Latest release: about 1 year ago - 23 downloads last month - 5 stars on GitHub - 1 maintainer
cansig 0.3.1
Discovering de novo shared transcriptional programs in single cancer cells8 versions - Latest release: over 1 year ago - 1 dependent repositories - 60 downloads last month - 12 stars on GitHub - 3 maintainers
Top 7.3% on pypi.org
4 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 2.14 thousand downloads last month - 280 stars on GitHub - 2 maintainers
cell2location 0.1.3
cell2location: High-throughput spatial mapping of cell types4 versions - Latest release: over 1 year ago - 3 dependent packages - 1 dependent repositories - 2.14 thousand downloads last month - 280 stars on GitHub - 2 maintainers
contrastive-vi 0.2.0
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 109 downloads last month - 2 maintainersscvi-criticism 0.1.0
Evaluation metrics for scvi-tools models1 version - Latest release: over 1 year ago - 14 downloads last month - 4 stars on GitHub - 1 maintainer
besca 2.5.3
Collection of BEDA internal python functions for analysing single cell RNAseq data.5 versions - Latest release: over 1 year ago - 1 dependent repositories - 101 downloads last month - 46 stars on GitHub - 2 maintainers
alethiomics 0.2.6 removed
Alethiomics data analysis utils33 versions - Latest release: over 1 year ago - 112 downloads last month - 1 maintainer
multigrate 1.0.0
Multigrate: multimodal data integration for single-cell genomics.3 versions - Latest release: about 2 years ago - 1 dependent repositories - 139 downloads last month - 12 stars on GitHub - 1 maintainer