Ecosyste.ms: Packages

single-cell 16 python 12 bioinformatics 10 single-cell-genomics 9 single-cell-rna-seq 9 transcriptomics 8 cite-seq 6 deep-learning 6 scatac-seq 6 scanpy 5 human-cell-atlas 5 multiomics 5 rna-seq 5 scrna-seq-analysis 4 clustering 4 genomics 4 machine-learning 4 visualization 4 single cell 3 differential-expression 3 pseudotime 3 anndata 3 variational-autoencoder 3 scverse 3 velocity 2 scslam-seq 2 multi-omics 2 mudata 2 scientific 2 deep-generative-model 2 muon 2 scnt-seq 2 computational-biology 2 gene-expression 2 cancer-genomics 2 sci-fate 2 singlecell 2 rna-velocity 2 scRNA-seq 2 nasc-seq 2 variational-bayes 2 umap 2 tsne 2 single-cell-atac-seq 2 scalable-data-analysis 2 memory-efficient 2 graph 2 graph-analytics 2 gene-modules 2 dimension-reduction 2 big-data 2 store 2 scrnaseq 2 pytorch 2 variational-inference 2 jax 2 vector-field 2 data-integration 2 batch-correction 2 dataviz 2 NASC-seq 1 python3 1 scSLAMseq 1 potential 1 cell-fate 1 differential-geometry 1 dynamical-systems 1 dynamo 1 potential-landscape 1 rna-acceleration 1 rna-curvature 1 rna-divergence 1 rna-jacobian 1 single-cell-omics 1 single-cell-sequencing 1 copy-number-variation 1 scrna-seq-data 1 university-of-michigan 1 bacteria 1 covid-19 1 metagenomics 1 ngs 1 pathogens 1 viruses 1 semi-supervised 1 cell-atlas 1 leidenalg 1 metabolic-labeling 1 VectorField 1 scNT-seq 1 nbdev 1 jupyter 1 notebook 1 association-testing 1 causal-inference 1 co-expression 1 gene-regulatory-network 1 hypothesis-testing 1 normalization 1 single-cell-crispr-screening 1