Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 2.4% on pypi.org
Top 3.0% downloads on pypi.org
Top 0.4% dependent packages on pypi.org
Top 2.5% dependent repos on pypi.org
Top 3.7% forks on pypi.org
Top 2.4% docker downloads on pypi.org
Top 3.0% downloads on pypi.org
Top 0.4% dependent packages on pypi.org
Top 2.5% dependent repos on pypi.org
Top 3.7% forks on pypi.org
Top 2.4% docker downloads on pypi.org
pypi.org : stardist
StarDist - Object Detection with Star-convex Shapes
Registry
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Source
- Documentation
- JSON
purl: pkg:pypi/stardist
Keywords: bioimage-analysis, cell-segmentation, deep-learning, nuclei-segmentation, object-detection, python
License: BSD-3-Clause
Latest release: about 1 month ago
First release: almost 6 years ago
Dependent packages: 25
Dependent repositories: 35
Downloads: 12,014 last month
Stars: 739 on GitHub
Forks: 203 on GitHub
Docker dependents: 3
Docker downloads: 319
Total Commits: 706
Committers: 19
Average commits per author: 37.158
Development Distribution Score (DDS): 0.745
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: about 12 hours ago
Top 8.2% on pypi.org
699 versions - Latest release: 27 days ago - 4 dependent packages - 4 dependent repositories - 4.5 thousand downloads last month - 29 stars on GitHub - 1 maintainer
vollseg 32.2.2 💰
Segmentation tool for biological cells of irregular size and shape in 3D and 2D.699 versions - Latest release: 27 days ago - 4 dependent packages - 4 dependent repositories - 4.5 thousand downloads last month - 29 stars on GitHub - 1 maintainer
byotrack 0.5.4
Biological particle tracking with Python23 versions - Latest release: about 1 month ago - 1 dependent repositories - 120 downloads last month - 7 stars on GitHub - 1 maintainer
spotiphy 0.1.3
An integrated pipeline designed to deconvolute and decompose spatial transcriptomics data, and pr...4 versions - Latest release: about 1 month ago - 36 downloads last month - 1 stars on GitHub - 1 maintainer
mnfinder 1.1.0
A package for segmenting micronuclei in microscopy images9 versions - Latest release: 2 months ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
pyxelperfect 0.1.10
Collection of python powered image-processing functions11 versions - Latest release: 2 months ago - 1 dependent repositories - 58 downloads last month - 5 stars on GitHub - 1 maintainer
fishpainter 0.1
Repository to create Fluorescence in Situ Hybridization with RGB color scheme5 versions - Latest release: 3 months ago - 324 downloads last month - 0 stars on GitHub - 1 maintainer
napari-brainways 0.1.11
Brainways UI21 versions - Latest release: 3 months ago - 246 downloads last month - 7 stars on GitHub - 1 maintainer
brainways 0.1.11
Brainways15 versions - Latest release: 3 months ago - 1 dependent package - 236 downloads last month - 10 stars on GitHub - 1 maintainer
3deecelltracker 1.0.0
A package for tracking cells in 3D time lapse images in deforming organs or moving animals12 versions - Latest release: 3 months ago - 1 dependent repositories - 172 downloads last month - 47 stars on GitHub - 1 maintainer
cenfind 0.14.0
Score cells for centrioles in IF data32 versions - Latest release: 4 months ago - 159 downloads last month - 1 stars on GitHub - 1 maintainer
napari-spofi 0.0.1
napari plugin to interactively train and test a StarDist model2 versions - Latest release: 4 months ago - 29 downloads last month - 0 stars on GitHub - 1 maintainer
vpt 1.2.2
Command line tool for highly parallelized processing of Vizgen data7 versions - Latest release: 4 months ago - 171 downloads last month - 21 stars on GitHub - 1 maintainer
vpt-plugin-watershed 1.0.1
Watershed Plugin for VPT2 versions - Latest release: 4 months ago - 1 dependent repositories - 150 downloads last month - 0 stars on GitHub - 1 maintainer
pyhim 0.9.1
Pipeline and functions to analyse multiplexed DNA-FISH data46 versions - Latest release: 6 months ago - 164 downloads last month - 3 stars on GitHub - 1 maintainer
run-stardist 0.0.2
Train and use StarDist models2 versions - Latest release: 7 months ago - 20 downloads last month - 1 maintainer
myoquant 0.3.5
MyoQuant🔬: a tool to automatically quantify pathological features in muscle fiber histology images.16 versions - Latest release: about 1 year ago - 124 downloads last month - 2 stars on GitHub - 1 maintainer
pynucseg 0.0.9
Segment fluorescent nucleus, and measure the area, and the mean intensity per nucleus.8 versions - Latest release: about 1 year ago - 46 downloads last month - 0 stars on GitHub - 1 maintainer
merge-stardist-masks 0.1.4
Merge Stardist Masks10 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 54 downloads last month - 1 stars on GitHub - 1 maintainer
quantify-nucleus 0.0.1 removed
A python package for segmentation of fluorescent nucleus, and measure the area of nucleus and the...1 version - Latest release: over 1 year ago - 0 stars on GitHub - 1 maintainer
quantify-fluorescent-nucleus 0.0.2 removed
A python package for segmentation of fluorescent nucleus, and measure the area of nucleus and the...2 versions - Latest release: over 1 year ago - 0 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
11 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 32 stars on GitHub - 2 maintainers
stardist-napari 2022.12.6
Object Detection with Star-convex Shapes11 versions - Latest release: over 1 year ago - 3 dependent packages - 2 dependent repositories - 1.17 thousand downloads last month - 32 stars on GitHub - 2 maintainers
spotipy-detector 0.1.0
Accurate and efficient spot detection with CNNs1 version - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 24 downloads last month - 12 stars on GitHub - 1 maintainer
stardist-stacked-timepoints 0.1.0
Stardist Stacked Timepoints5 versions - Latest release: over 1 year ago - 42 downloads last month - 1 stars on GitHub - 1 maintainer
napari-splinedist 0.3.1
A napari SplineDist plugin5 versions - Latest release: over 1 year ago - 23 downloads last month - 0 stars on GitHub - 2 maintainers
napari-stpt 0.0.8
napari viewer which can read stpt, axio and imc images as zarr files71 versions - Latest release: about 3 years ago - 1 dependent repositories - 615 downloads last month - 2 stars on GitHub - 1 maintainer