Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioimage-analysis" keyword
napari-j 0.2.4
A plugin to exchange data with FIJI and to use FIJI image analysis from napari6 versions - Latest release: over 1 year ago - 1 dependent repositories - 62 downloads last month - 3 stars on GitHub - 2 maintainers
Top 2.4% on pypi.org
31 versions - Latest release: about 1 month ago - 25 dependent packages - 35 dependent repositories - 14.5 thousand downloads last month - 739 stars on GitHub - 2 maintainers
stardist 0.9.1
StarDist - Object Detection with Star-convex Shapes31 versions - Latest release: about 1 month ago - 25 dependent packages - 35 dependent repositories - 14.5 thousand downloads last month - 739 stars on GitHub - 2 maintainers
scip 0.1.12
Scalable Cytometry Image Processing (SCIP) is an open-source tool that implements an image6 versions - Latest release: over 1 year ago - 2 dependent packages - 4 dependent repositories - 1.54 thousand downloads last month - 7 stars on GitHub - 1 maintainer
magellanmapper 1.6b4
3D atlas analysis and annotation3 versions - Latest release: about 1 month ago - 24 downloads last month - 20 stars on GitHub - 1 maintainer
partseg 0.15.2
PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analy...72 versions - Latest release: 9 months ago - 1 dependent package - 1 dependent repositories - 2.05 thousand downloads last month - 27 stars on GitHub - 1 maintainer
partsegdata 0.10.0
PartSeg data files3 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 821 downloads last month - 27 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
39 versions - Latest release: 11 days ago - 8 dependent packages - 6 dependent repositories - 4.46 thousand downloads last month - 18 stars on GitHub - 1 maintainer
bioimageio.core 0.6.5
Python functionality for the bioimage model zoo39 versions - Latest release: 11 days ago - 8 dependent packages - 6 dependent repositories - 4.46 thousand downloads last month - 18 stars on GitHub - 1 maintainer
napari-bioimageio 0.1.3
Python libraries for loading, running and packaging bioimage.io models3 versions - Latest release: almost 2 years ago - 51 downloads last month - 18 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
72 versions - Latest release: 15 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
pyclesperanto-prototype 0.24.4
GPU-accelerated image processing in python using OpenCL72 versions - Latest release: 15 days ago - 10 dependent packages - 4 dependent repositories - 3.63 thousand downloads last month - 197 stars on GitHub - 1 maintainer
clesperanto 0.1.3
A graphical user interface for clesperanto based on napari4 versions - Latest release: over 2 years ago - 1 dependent repositories - 61 downloads last month - 197 stars on GitHub - 1 maintainer
run-stardist 0.0.2
Train and use StarDist models2 versions - Latest release: 7 months ago - 20 downloads last month - 1 maintainer
tysserand 0.5.1
Fast and accurate spatial networks reconstruction.6 versions - Latest release: over 2 years ago - 1 dependent repositories - 88 downloads last month - 23 stars on GitHub - 1 maintainer
deepflash2 0.2.3
A Deep learning pipeline for segmentation of fluorescent labels in microscopy images27 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 258 downloads last month - 56 stars on GitHub - 1 maintainer
bio-image-unet 0.6.1
Implementations of U-Net and Siam U-Net for biological image segmentation17 versions - Latest release: 7 months ago - 1 dependent repositories - 495 downloads last month - 2 stars on GitHub - 2 maintainers
Related Keywords
deep-learning
5
bioimaging
3
python
3
microscopy
3
napari
2
bioimage-infomatics
2
gpu-acceleration
2
image-processing
2
nucleus-segmentation
1
stardist
1
network
1
network-analysis
1
spatial-analysis
1
spatial-network
1
unet
1
deep learning
1
semantic segmentation
1
fluorescent labels
1
fastai
1
pytorch
1
segmentation
1
unet-image-segmentation
1
unet-pytorch
1
fiji
1
image-analysis
1
imagej
1
napari-plugin
1
cell-segmentation
1
nuclei-segmentation
1
object-detection
1
cytometry-analysis-pipeline
1
dask
1
dask-distributed
1
distributed-computing
1
3d-reconstruction
1
atlas
1
cell-detection
1
gui
1
image-registration
1
microscopy-image-analysis
1
GUI
1