Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
repo1.maven.org "vcf" keyword
de.charite.compbio:jannovar-vardbs 0.41
jannovar-vardbs helps with using variant annotation databases, e.g. dbSNP25 versions - Latest release: over 1 year ago - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-core 0.41
jannovar-core is a library for the functional annotation of genomic variants28 versions - Latest release: over 1 year ago - 8 dependent packages - 12 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-hgvs 0.41
parsing and representing HGVS annotations27 versions - Latest release: over 1 year ago - 2 dependent packages - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:Jannovar 0.41
Sonatype helps open source projects to set up Maven repositories on https://oss.sonatype.org/28 versions - Latest release: over 1 year ago - 1 dependent repositories - 50 stars on GitHub
de.charite.compbio:jped-cli 0.16
jped-cli is the command line interface to jannovar-filter, for filtering VCF files for compatibil...3 versions - Latest release: over 8 years ago - 50 stars on GitHub
de.charite.compbio:jannovar-htsjdk 0.41
jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK28 versions - Latest release: over 1 year ago - 3 dependent packages - 10 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-filter 0.41
jannovar-filter helps with applying threshold-based filters for WES/WGS filters24 versions - Latest release: over 1 year ago - 8 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-inheritance-checker 0.20
jannovar-inheritance-checker is a library to filter variantContext with inheritances6 versions - Latest release: over 7 years ago - 1 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-cli 0.41
jannovar-cli is the command line interface for Jannovar28 versions - Latest release: over 1 year ago - 1 dependent repositories - 50 stars on GitHub
de.charite.compbio:jannovar-stats 0.41
jannovar-stats helps in aggregating statistics about variants and variant annotations21 versions - Latest release: over 1 year ago - 8 dependent repositories - 50 stars on GitHub
Top 7.8% on repo1.maven.org
78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
com.github.samtools:htsjdk 4.1.0
A Java API for high-throughput sequencing data (HTS) formats78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
com.lifeomic:spark-vcf 0.3.3
Spark datasource for vcf files6 versions - Latest release: over 4 years ago - 15 stars on GitHub
com.github.biopet:annotatevcfwithbed_2.11 0.1
AnnotateVcfWithBed1 version - Latest release: about 6 years ago - 1 dependent package - 0 stars on GitHub
au.csiro.aehrc.variant-spark:variant-spark_2.11 0.4.0
Genomic variants interpretation toolkit7 versions - Latest release: almost 2 years ago - 121 stars on GitHub
au.csiro.aehrc.variant-spark:variant-spark_2.12 0.5.2
Genomic variants interpretation toolkit3 versions - Latest release: over 1 year ago - 121 stars on GitHub
org.seqdoop:htsjdk 1.118
A Java API for high-throughput sequencing data (HTS) formats.1 version - Latest release: over 9 years ago - 6 dependent packages - 10 dependent repositories - 259 stars on GitHub
com.github.samtools:htsjdk_2.11 1.128
htsjdk1 version - Latest release: about 9 years ago - 254 stars on GitHub
Related Keywords
bioinformatics
12
variant-annotation
10
variant-filtration
10
genomics
4
sequencing
3
sam
3
ngs
3
java-api
3
java
3
fasta
3
dna
3
cram
3
bam
3
variantspark
2
variant-spark
2
random-forest
2
notebook
2
gwas
2
genome
2
emr
2
databricks
2
aws
2
association-studies
2
vcf-files
1
variants
1
team-clinical-intelligence
1
spark-sql
1
spark
1
lifeomic
1
genotype
1
dataframe
1