Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 1.0% on spack.io
Top 2.0% dependent packages on spack.io
Top 2.0% dependent packages on spack.io
spack.io : blast-plus
Basic Local Alignment Search Tool.
Registry
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Source
- JSON
purl: pkg:spack/blast-plus
License: Other
Latest release: 7 months ago
First release: about 2 years ago
Dependent packages: 31
Last synced: 1 day ago
amrfinder 3.12.8
NCBI AMRFinderPlus: This software and the accompanying database identify acquired antimicrobial r...5 versions - Latest release: 23 days ago - 1 dependent package
py-tesorter 1.4.6
TEsorter is coded for LTR_retriever to classify long terminal repeat retrotransposons (LTR-RTs) ...1 version - Latest release: 8 months ago - 1 dependent package - 59 stars on GitHub - 1 maintainer
orthofinder 2.5.5
OrthoFinder is a fast, accurate and comprehensive analysis tool for comparative genomics. It find...4 versions - Latest release: 10 months ago - 1 dependent package - 513 stars on GitHub
ltr-retriever 2.9.4
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposo...2 versions - Latest release: 10 months ago - 1 dependent package - 147 stars on GitHub - 1 maintainer
transposome 0.12.1
A toolkit for annotation of transposable element families from unassembled sequence reads.2 versions - Latest release: 10 months ago
mlst 2.23.0
Scan contig files against traditional PubMLST typing schemes2 versions - Latest release: 12 months ago - 143 stars on GitHub
getorganelle 1.7.5.0
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)2 versions - Latest release: about 1 year ago - 191 stars on GitHub - 1 maintainer
isescan 1.7.2.3
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome2 versions - Latest release: over 1 year ago - 52 stars on GitHub
py-phylophlan 3.0.3
PhyloPhlAn 3.0 is an integrated pipeline for large-scale phylogenetic profiling of genomes and me...2 versions - Latest release: over 1 year ago - 1 dependent package - 77 stars on GitHub - 1 maintainer
roary 3.13.0
Rapid large-scale prokaryote pan genome analysis1 version - Latest release: over 1 year ago - 254 stars on GitHub
sepp 4.5.1
SEPP stands for SATe-enabled phylogenetic placement1 version - Latest release: over 1 year ago - 68 stars on GitHub - 1 maintainer
py-shortbred 0.9.5
ShortBRED is a system for profiling protein families of interest at very high specificity in shot...1 version - Latest release: over 1 year ago - 1 maintainer
py-metaphlan 4.0.2
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteri...2 versions - Latest release: over 1 year ago - 180 stars on GitHub - 1 maintainer
py-bakta 1.5.1
Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids1 version - Latest release: over 1 year ago - 282 stars on GitHub - 1 maintainer
py-unicycler 0.5.0
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets ...6 versions - Latest release: almost 2 years ago - 450 stars on GitHub - 1 maintainer
Top 7.1% on spack.io
5 versions - Latest release: about 2 years ago - 3 dependent packages
trinity 2.6.6
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a no...5 versions - Latest release: about 2 years ago - 3 dependent packages
tcoffee 2017-08-17
T-Coffee is a multiple sequence alignment program.1 version - Latest release: about 2 years ago
shortbred 0.9.4
ShortBRED is a system for profiling protein families of interest at very high specificity in shot...1 version - Latest release: about 2 years ago
rnaquast 2.2.0
Quality assessment of de novo transcriptome assemblies from RNA-Seq data rnaQUAST is a tool for e...1 version - Latest release: about 2 years ago - 11 stars on GitHub - 1 maintainer
py-vcf-kit 0.1.6
VCF-kit is a command-line based collection of utilities for performing analysis on Variant Call F...1 version - Latest release: about 2 years ago - 100 stars on GitHub - 1 maintainer
py-pyani 0.2.7
pyani is a Python3 module that provides support for calculating average nucleotide identity (ANI)...2 versions - Latest release: about 2 years ago - 1 maintainer
py-haphpipe 1.0.3
HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.1 version - Latest release: about 2 years ago - 6 stars on GitHub - 1 maintainer
py-getorganelle 1.7.5.0 removed
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)1 version - Latest release: about 2 years ago - 190 stars on GitHub - 3 maintainers
prokka 1.14.6
Prokka is a software tool to annotate bacterial, archaeal and viral genomes quickly and produce s...1 version - Latest release: about 2 years ago - 1 dependent package - 636 stars on GitHub
orthomcl 2.0.9
OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences.1 version - Latest release: about 2 years ago
maker 2.31.10
MAKER is a portable and easily configurable genome annotation pipeline. It's purpose is to allow ...3 versions - Latest release: about 2 years ago
hybpiper 1.3.1
HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enrich...2 versions - Latest release: about 2 years ago - 78 stars on GitHub
busco 4.1.3
Assesses genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orth...3 versions - Latest release: about 2 years ago - 1 maintainer
blast2go 5.2.5
Blast2GO is a bioinformatics platform for high-quality functional annotation and analysis of geno...1 version - Latest release: about 2 years ago
biopieces 2016-04-12
The Biopieces are a collection of bioinformatics tools that can be pieced together in a very easy...1 version - Latest release: about 2 years ago