Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
Top 0.3% on spack.io
Top 0.7% dependent packages on spack.io
Top 0.7% dependent packages on spack.io
spack.io : r-matrix
Sparse and Dense Matrix Classes and Methods. A rich hierarchy of matrix classes, including triangular, symmetric, and diagonal matrices, both dense and sparse and with pattern, logical and numeric entries. Numerous methods for and operations on these matrices, using 'LAPACK' and 'SuiteSparse' libraries.
Registry
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Source
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purl: pkg:spack/r-matrix
License: Other
Latest release: about 1 year ago
First release: about 2 years ago
Dependent packages: 83
Last synced: 1 day ago
r-doby 4.6.16
Groupwise Statistics, LSmeans, Linear Estimates, Utilities. Utility package containing: 1) Facili...1 version - Latest release: 9 months ago - 1 dependent package
r-spatstat-model 3.2-3
Parametric Statistical Modelling and Inference for the 'spatstat' Family. Functionality for param...1 version - Latest release: 9 months ago - 2 dependent packages
r-mclogit 0.9.6
Multinomial Logit Models, with or without Random Effects or Overdispersion. Provides estimators f...1 version - Latest release: 9 months ago - 1 dependent package
bioconductor-tximeta 1.18.1
Transcript Quantification Import with Automatic Metadata Transcript quantification import from Sa...1 version - Latest release: 9 months ago
bioconductor-rsubread 2.14.2
Mapping, quantification and variant analysis of sequencing data1 version - Latest release: 9 months ago - 1 dependent package
r-metafor 4.0-0
Meta-Analysis Package for R. A comprehensive collection of functions for conducting meta-analyses...2 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
Top 5.8% on spack.io
6 versions - Latest release: 11 months ago - 4 dependent packages - 1 maintainer
r-phangorn 2.11.1
Phylogenetic Reconstruction and Analysis. Allows for estimation of phylogenetic trees and network...6 versions - Latest release: 11 months ago - 4 dependent packages - 1 maintainer
Top 9.5% on spack.io
6 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
r-pbkrtest 0.5.2
Parametric Bootstrap, Kenward-Roger and Satterthwaite Based Methods for Test in Mixed Models. Tes...6 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
r-blockmodeling 1.1.4
Generalized and Classical Blockmodeling of Valued Networks. This is primarily meant as an impleme...6 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
r-osqp 0.6.0.8
Quadratic Programming Solver using the 'OSQP' Library. Provides bindings to the 'OSQP' solver. Th...2 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
r-signac 1.9.0
Analysis of Single-Cell Chromatin Data. A framework for the analysis and exploration of single-ce...3 versions - Latest release: 11 months ago - 1 maintainer
r-spatialreg 1.2-8
Spatial Regression Analysis. A collection of all the estimation functions for spatial cross-secti...6 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
r-grbase 1.8.9
A Package for Graphical Modelling in R. The 'gRbase' package provides graphical modelling feature...5 versions - Latest release: 11 months ago - 1 maintainer
r-copula 1.1-2
Multivariate Dependence with Copulas. Classes (S4) of commonly used elliptical, Archimedean, extr...4 versions - Latest release: 11 months ago - 1 maintainer
r-spatstat-linnet 3.1-0
Linear Networks Functionality of the 'spatstat' Family. Defines types of spatial data on a linear...3 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
r-lfe 2.9-0
Linear Group Fixed Effects. Transforms away factors with many levels prior to doing an OLS. Usefu...6 versions - Latest release: 11 months ago - 1 maintainer
r-ordinal 2022.11-16
Regression Models for Ordinal Data. Implementation of cumulative link (mixed) models also known a...3 versions - Latest release: 11 months ago - 2 dependent packages - 1 maintainer
r-caracas 2.0.0
Computer Algebra. Computer algebra via the 'SymPy' library (<https://www.sympy.org/>). This makes...5 versions - Latest release: 11 months ago - 1 maintainer
r-seurat 4.3.0
Tools for Single Cell Genomics. A toolkit for quality control, analysis, and exploration of singl...11 versions - Latest release: 11 months ago - 1 maintainer
r-xgboost 1.7.5.1
Extreme Gradient Boosting. Extreme Gradient Boosting, which is an efficient implementation of gra...8 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
r-brms 2.19.0
Bayesian Regression Models using 'Stan'. Fit Bayesian generalized (non-)linear multivariate multi...6 versions - Latest release: 11 months ago - 1 maintainer
r-recipes 1.0.6
Preprocessing Tools to Create Design Matrices. An extensible framework to create and preprocess d...7 versions - Latest release: 11 months ago - 1 dependent package - 1 maintainer
r-geomorph 4.0.5
Geometric Morphometric Analyses of 2D/3D Landmark Data. Read, manipulate, and digitize landmark d...9 versions - Latest release: 11 months ago - 1 maintainer
r-ergm 4.4.0
Fit, Simulate and Diagnose Exponential-Family Models for Networks. An integrated set of tools to ...10 versions - Latest release: 11 months ago - 1 maintainer
r-blavaan 0.4-7
Bayesian Latent Variable Analysis. Fit a variety of Bayesian latent variable models, including co...5 versions - Latest release: 11 months ago - 1 maintainer
r-spatstat-explore 3.1-0
Exploratory Data Analysis for the 'spatstat' Family. Functionality for exploratory data analysis ...2 versions - Latest release: 11 months ago - 5 dependent packages - 1 maintainer
Top 7.1% on spack.io
4 versions - Latest release: 11 months ago - 4 dependent packages - 1 maintainer
r-spatstat-sparse 3.0-1
Sparse Three-Dimensional Arrays and Linear Algebra Utilities. Defines sparse three-dimensional ar...4 versions - Latest release: 11 months ago - 4 dependent packages - 1 maintainer
Top 9.5% on spack.io
5 versions - Latest release: 11 months ago - 2 dependent packages - 1 maintainer
r-spatstat 3.0-5
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests. Comprehensive open-source toolb...5 versions - Latest release: 11 months ago - 2 dependent packages - 1 maintainer
Top 9.5% on spack.io
11 versions - Latest release: 11 months ago - 2 dependent packages - 1 maintainer
r-ranger 0.15.1
A Fast Implementation of Random Forests. A fast implementation of Random Forests, particularly su...11 versions - Latest release: 11 months ago - 2 dependent packages - 1 maintainer
Top 7.1% on spack.io
8 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
r-reticulate 1.28
Interface to 'Python'. Interface to 'Python' modules, classes, and functions. When calling into '...8 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
Top 9.5% on spack.io
7 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
r-ks 1.14.0
Kernel Smoothing. Kernel smoothers for univariate and multivariate data, including densities, den...7 versions - Latest release: 11 months ago - 3 dependent packages - 1 maintainer
Top 5.8% on spack.io
5 versions - Latest release: 11 months ago - 4 dependent packages - 1 maintainer
r-expm 0.999-7
Matrix Exponential, Log, 'etc'. Computation of the matrix exponential, logarithm, sqrt, and relat...5 versions - Latest release: 11 months ago - 4 dependent packages - 1 maintainer
Top 4.9% on spack.io
9 versions - Latest release: 11 months ago - 5 dependent packages - 1 maintainer
r-spdep 1.2-8
Spatial Dependence: Weighting Schemes, Statistics. A collection of functions to create spatial we...9 versions - Latest release: 11 months ago - 5 dependent packages - 1 maintainer
Top 4.2% on spack.io
7 versions - Latest release: 11 months ago - 7 dependent packages - 1 maintainer
r-spatstat-data 3.0-1
Datasets for 'spatstat' Family. Contains all the datasets for the 'spatstat' family of packages.7 versions - Latest release: 11 months ago - 7 dependent packages - 1 maintainer
Top 2.0% on spack.io
15 versions - Latest release: 11 months ago - 15 dependent packages - 1 maintainer
r-mgcv 1.8-42
Mixed GAM Computation Vehicle with Automatic Smoothness Estimation. Generalized additive (mixed) ...15 versions - Latest release: 11 months ago - 15 dependent packages - 1 maintainer
Top 3.3% on spack.io
10 versions - Latest release: 11 months ago - 9 dependent packages - 1 maintainer
r-lme4 1.1-33
Linear Mixed-Effects Models using 'Eigen' and S4. Fit linear and generalized linear mixed-effects...10 versions - Latest release: 11 months ago - 9 dependent packages - 1 maintainer
Top 1.4% on spack.io
9 versions - Latest release: almost 1 year ago - 23 dependent packages - 1 maintainer
r-igraph 1.4.2
Network Analysis and Visualization. Routines for simple graphs and network analysis. It can handl...9 versions - Latest release: almost 1 year ago - 23 dependent packages - 1 maintainer
Top 1.0% on spack.io
11 versions - Latest release: almost 1 year ago - 31 dependent packages - 1 maintainer
r-survival 3.5-5
Survival Analysis. Contains the core survival analysis routines, including definition of Surv obj...11 versions - Latest release: almost 1 year ago - 31 dependent packages - 1 maintainer
Top 5.8% on spack.io
7 versions - Latest release: about 1 year ago - 6 dependent packages - 1 maintainer
r-glmnet 4.1-7
Lasso and Elastic-Net Regularized Generalized Linear Models. Extremely efficient procedures for f...7 versions - Latest release: about 1 year ago - 6 dependent packages - 1 maintainer
r-conquer 1.3.3
Convolution-Type Smoothed Quantile Regression. Fast and accurate convolution-type smoothed quanti...5 versions - Latest release: about 1 year ago - 1 dependent package - 1 maintainer
r-mendelianrandomization 0.7.0
Mendelian Randomization Package. Encodes several methods for performing Mendelian randomization a...1 version - Latest release: about 1 year ago - 1 dependent package - 1 maintainer
r-cvxr 1.0-11
Disciplined Convex Optimization. An object-oriented modeling language for disciplined convex prog...1 version - Latest release: over 1 year ago - 1 maintainer
Top 1.8% on spack.io
8 versions - Latest release: over 1 year ago - 16 dependent packages - 1 maintainer
r-rcppeigen 0.3.3.9.3
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library. R and 'Eigen' integration us...8 versions - Latest release: over 1 year ago - 16 dependent packages - 1 maintainer
r-uwot 0.1.14
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality Reduction. An ...4 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
r-fda 6.0.5
Functional Data Analysis. These functions were developed to support functional data analysis as d...3 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
r-rrpp 1.3.1
Linear Model Evaluation with Randomized Residuals in a Permutation Procedure. Linear model calcul...7 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
r-sctransform 0.3.5
Variance Stabilizing Transformations for Single Cell UMI Data. A normalization method for single-...4 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
Top 9.5% on spack.io
4 versions - Latest release: over 1 year ago - 2 dependent packages - 1 maintainer
r-seuratobject 4.1.3
Data Structures for Single Cell Data. Defines S4 classes for single-cell genomic data and associa...4 versions - Latest release: over 1 year ago - 2 dependent packages - 1 maintainer
r-mcmcglmm 2.34
MCMC Generalised Linear Mixed Models. Fits Multivariate Generalised Linear Mixed Models (and rela...7 versions - Latest release: over 1 year ago - 1 maintainer
r-matrixmodels 0.5-1
Modelling with Sparse and Dense Matrices. Modelling with sparse and dense 'Matrix' matrices, usin...3 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
r-leiden 0.4.3
R Implementation of Leiden Clustering Algorithm. Implements the 'Python leidenalg' module to be c...5 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
r-brobdingnag 1.2-9
Very Large Numbers in R. Handles very large numbers in R. Real numbers are held using their natur...3 versions - Latest release: over 1 year ago - 1 dependent package - 1 maintainer
r-speedglm 0.3-4
Fitting Linear and Generalized Linear Models to Large Data Sets. Fitting linear models and genera...3 versions - Latest release: almost 2 years ago - 1 dependent package - 1 maintainer
Top 5.8% on spack.io
2 versions - Latest release: almost 2 years ago - 4 dependent packages - 1 maintainer
r-spatstat-core 2.4-4
Core Functionality of the 'spatstat' Family. Functionality for data analysis and modelling of spa...2 versions - Latest release: almost 2 years ago - 4 dependent packages - 1 maintainer
r-rspectra 0.16-1
Solvers for Large-Scale Eigenvalue and SVD Problems. R interface to the 'Spectra' library <https:...3 versions - Latest release: almost 2 years ago - 1 dependent package - 1 maintainer
r-rcppml 0.3.7
Rcpp Machine Learning Library Fast machine learning algorithms including matrix factorization and...1 version - Latest release: almost 2 years ago - 1 maintainer
Top 9.5% on spack.io
3 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
r-threejs 0.3.3
Interactive 3D Scatter Plots, Networks and Globes. Create interactive 3D scatter plots, network p...3 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
r-tfisher 0.2.0
Optimal Thresholding Fisher's P-Value Combination Method. We provide the cumulative distribution ...1 version - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-survey 3.30-3
Analysis of Complex Survey Samples. Summary statistics, two-sample tests, rank tests, generalised...5 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 1.6% on spack.io
8 versions - Latest release: about 2 years ago - 20 dependent packages - 1 maintainer
r-summarizedexperiment 1.24.0
SummarizedExperiment container. The SummarizedExperiment container contains one or more assays, e...8 versions - Latest release: about 2 years ago - 20 dependent packages - 1 maintainer
r-sparsematrixstats 1.6.0
Summary Statistics for Rows and Columns of Sparse Matrices. High performance functions for row an...2 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-snpstats 1.44.0
SnpMatrix and XSnpMatrix classes and methods. Classes and statistical methods for large SNP assoc...7 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-scuttle 1.4.0
Single-Cell RNA-Seq Analysis Utilities. Provides basic utility functions for performing single-ce...2 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-scater 1.22.0
Single-Cell Analysis Toolkit for Gene Expression Data in R. A collection of tools for doing vario...7 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-scaledmatrix 1.2.0
Creating a DelayedMatrix of Scaled and Centered Values. Provides delayed computation of a matrix ...1 version - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 9.5% on spack.io
3 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
r-rsvd 1.0.5
Randomized Singular Value Decomposition. Low-rank matrix decompositions are fundamental tools and...3 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
r-rcppblaze 0.2.2
'Blaze' is an open-source, high-performance C++ math library for dense and sparse arithmetic. Wit...1 version - Latest release: about 2 years ago - 1 maintainer
Top 4.9% on spack.io
12 versions - Latest release: about 2 years ago - 6 dependent packages - 1 maintainer
r-quantreg 5.42.1
Quantile Regression. Estimation and inference methods for models of conditional quantiles: Linear...12 versions - Latest release: about 2 years ago - 6 dependent packages - 1 maintainer
r-kknn 1.3.1
Weighted k-Nearest Neighbors. Weighted k-Nearest Neighbors for Classification, Regression and Clu...1 version - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 4.9% on spack.io
6 versions - Latest release: about 2 years ago - 5 dependent packages - 1 maintainer
r-irlba 2.3.5
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and...6 versions - Latest release: about 2 years ago - 5 dependent packages - 1 maintainer
r-influencer 0.1.0
Software Tools to Quantify Structural Importance of Nodes in a Network. Provides functionality to...2 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 5.8% on spack.io
7 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
r-hdf5array 1.22.1
HDF5 backend for DelayedArray objects. Implements the HDF5Array and TENxMatrix classes, 2 conveni...7 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
r-gamm4 0.2-6
Generalized Additive Mixed Models using 'mgcv' and 'lme4'. Estimate generalized additive mixed mo...1 version - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-fgsea 1.20.0
Fast Gene Set Enrichment Analysis. The package implements an algorithm for fast gene set enrichme...7 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-diffusionmap 1.2.0
Diffusion Map. Implements diffusion map method of data parametrization, including creation and vi...6 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 5.8% on spack.io
6 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
r-delayedmatrixstats 1.16.0
Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects. A port of the 'matrixStats' ...6 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
Top 2.4% on spack.io
7 versions - Latest release: about 2 years ago - 12 dependent packages - 1 maintainer
r-delayedarray 0.20.0
A unified framework for working transparently with on-disk and in-memory array-like datasets. Wra...7 versions - Latest release: about 2 years ago - 12 dependent packages - 1 maintainer
Top 9.5% on spack.io
7 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
r-category 2.60.0
Category Analysis. A collection of tools for performing category (gene set enrichment) analysis.7 versions - Latest release: about 2 years ago - 2 dependent packages - 1 maintainer
r-bridgesampling 1.1-2
Bridge Sampling for Marginal Likelihoods and Bayes Factors. Provides functions for estimating mar...1 version - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-biomformat 1.22.0
An interface package for the BIOM file format. This is an R package for interfacing with the BIOM...7 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-biocsingular 1.10.0
Singular Value Decomposition for Bioconductor Packages. Implements exact and approximate methods ...3 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
r-biocneighbors 1.12.0
Nearest Neighbor Detection for Bioconductor Packages. Implements exact and approximate methods fo...4 versions - Latest release: about 2 years ago - 1 dependent package - 1 maintainer
Top 5.8% on spack.io
6 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer
r-beachmat 2.10.0
Compiling Bioconductor to Handle Each Matrix Type. Provides a consistent C++ class interface for ...6 versions - Latest release: about 2 years ago - 4 dependent packages - 1 maintainer