Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "GeneticVariability" keyword
RIVER 1.26.0
R package for RIVER (RNA-Informed Variant Effect on Regulation)3 versions - Latest release: 7 months ago - 8.83 thousand downloads total - 10 stars on GitHub - 1 maintainer
RAIDS 1.0.0
Accurate Inference of Genetic Ancestry from Cancer Sequences2 versions - Latest release: 7 months ago - 1.03 thousand downloads total - 5 stars on GitHub - 1 maintainer
Top 2.7% on bioconductor.org
3 versions - Latest release: 7 months ago - 15 dependent packages - 398 thousand downloads total - 1 maintainer
snpStats 1.52.0
SnpMatrix and XSnpMatrix classes and methods3 versions - Latest release: 7 months ago - 15 dependent packages - 398 thousand downloads total - 1 maintainer
Top 2.1% on bioconductor.org
3 versions - Latest release: 7 months ago - 23 dependent packages - 696 thousand downloads total - 1 maintainer
phyloseq 1.46.0
Handling and analysis of high-throughput microbiome census data3 versions - Latest release: 7 months ago - 23 dependent packages - 696 thousand downloads total - 1 maintainer
Top 1.8% on bioconductor.org
4 versions - Latest release: 27 days ago - 14 dependent packages - 313 thousand downloads total - 2 maintainers
Rsubread 2.18.0
Mapping, quantification and variant analysis of sequencing data4 versions - Latest release: 27 days ago - 14 dependent packages - 313 thousand downloads total - 2 maintainers
gwasurvivr 1.20.0
gwasurvivr: an R package for genome wide survival analysis3 versions - Latest release: 6 months ago - 9.71 thousand downloads total - 9 stars on GitHub - 1 maintainer
MAGAR 1.10.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...3 versions - Latest release: 7 months ago - 4.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
GeneGeneInteR 1.28.0
Tools for Testing Gene-Gene Interaction at the Gene Level3 versions - Latest release: 7 months ago - 10.7 thousand downloads total - 1 maintainer
GBScleanR 1.8.0
Error correction tool for noisy genotyping by sequencing (GBS) data3 versions - Latest release: about 1 month ago - 2.17 thousand downloads total - 0 stars on GitHub - 1 maintainer
microbiomeExplorer 1.12.0
Microbiome Exploration App3 versions - Latest release: 7 months ago - 6.29 thousand downloads total - 1 maintainer
Clomial 1.38.0
Infers clonal composition of a tumor3 versions - Latest release: 7 months ago - 16.4 thousand downloads total - 1 maintainer
OMICsPCA 1.20.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...3 versions - Latest release: 7 months ago - 7.29 thousand downloads total - 1 maintainer
QSutils 1.20.0
Quasispecies Diversity3 versions - Latest release: 7 months ago - 19.7 thousand downloads total - 1 maintainer
ISoLDE 1.30.0
Integrative Statistics of alleLe Dependent Expression3 versions - Latest release: 7 months ago - 9.18 thousand downloads total - 1 maintainer
pathVar 1.32.0
Methods to Find Pathways with Significantly Different Variability3 versions - Latest release: 7 months ago - 9.78 thousand downloads total - 1 maintainer
omicsPrint 1.22.0
Cross omic genetic fingerprinting3 versions - Latest release: 7 months ago - 7.42 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
3 versions - Latest release: 7 months ago - 3 dependent packages - 28.9 thousand downloads total - 1 maintainer
RTN 2.26.0
RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons3 versions - Latest release: 7 months ago - 3 dependent packages - 28.9 thousand downloads total - 1 maintainer
CrispRVariants 1.30.0
Tools for counting and visualising mutations in a target location3 versions - Latest release: 7 months ago - 17.1 thousand downloads total - 1 maintainer
FRGEpistasis 1.38.0
Epistasis Analysis for Quantitative Traits by Functional Regression Model3 versions - Latest release: 7 months ago - 15.8 thousand downloads total - 1 maintainer
appreci8R 1.20.2
appreci8R: an R/Bioconductor package for filtering SNVs and short indels with high sensitivity an...4 versions - Latest release: 3 months ago - 7.54 thousand downloads total - 1 maintainer
SIAMCAT 2.6.0
Statistical Inference of Associations between Microbial Communities And host phenoTypes3 versions - Latest release: 7 months ago - 11.8 thousand downloads total - 1 maintainer
trigger 1.48.0
Transcriptional Regulatory Inference from Genetics of Gene ExpRession3 versions - Latest release: 7 months ago - 22.3 thousand downloads total - 1 maintainer
trio 3.40.0
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies3 versions - Latest release: 7 months ago - 23.7 thousand downloads total - 1 maintainer
BUMHMM 1.26.0
Computational pipeline for computing probability of modification from structure probing experimen...3 versions - Latest release: 7 months ago - 9.56 thousand downloads total - 1 maintainer
VariantTools 1.44.0
Tools for Exploratory Analysis of Variant Calls3 versions - Latest release: 7 months ago - 2 dependent packages - 27.5 thousand downloads total - 1 maintainer
TVTB 1.28.0
TVTB: The VCF Tool Box3 versions - Latest release: 7 months ago - 9.85 thousand downloads total - 2 stars on GitHub - 1 maintainer
BiocOncoTK 1.22.2
Bioconductor components for general cancer genomics4 versions - Latest release: about 1 month ago - 9.97 thousand downloads total - 1 maintainer
Top 7.5% on bioconductor.org
3 versions - Latest release: 7 months ago - 40.7 thousand downloads total - 1 maintainer
chopsticks 1.68.0
The 'snp.matrix' and 'X.snp.matrix' Classes3 versions - Latest release: 7 months ago - 40.7 thousand downloads total - 1 maintainer
Top 9.0% on bioconductor.org
3 versions - Latest release: 7 months ago - 27.6 thousand downloads total - 1 maintainer
RLMM 1.64.0
A Genotype Calling Algorithm for Affymetrix SNP Arrays3 versions - Latest release: 7 months ago - 27.6 thousand downloads total - 1 maintainer
epistasisGA 1.4.0
An R package to identify multi-snp effects in nuclear family studies using the GADGETS method3 versions - Latest release: 7 months ago - 1.63 thousand downloads total - 1 stars on GitHub - 1 maintainer
microSTASIS 1.2.0
Microbiota STability ASsessment via Iterative cluStering3 versions - Latest release: 7 months ago - 1.44 thousand downloads total - 1 maintainer
Top 9.5% on bioconductor.org
3 versions - Latest release: 7 months ago - 37.6 thousand downloads total - 1 maintainer
beadarraySNP 1.68.0
Normalization and reporting of Illumina SNP bead arrays3 versions - Latest release: 7 months ago - 37.6 thousand downloads total - 1 maintainer
GSReg 1.36.0
Gene Set Regulation (GS-Reg)3 versions - Latest release: 7 months ago - 14.4 thousand downloads total - 2 maintainers
BBCAnalyzer 1.32.0
BBCAnalyzer: an R/Bioconductor package for visualizing base counts3 versions - Latest release: 7 months ago - 12.6 thousand downloads total - 1 maintainer
gmoviz 1.14.0
Seamless visualization of complex genomic variations in GMOs and edited cell lines3 versions - Latest release: 7 months ago - 4.38 thousand downloads total - 1 maintainer
Top 8.5% on bioconductor.org
3 versions - Latest release: 7 months ago - 2 dependent packages - 33.9 thousand downloads total - 1 maintainer
deepSNV 1.48.0
Detection of subclonal SNVs in deep sequencing data.3 versions - Latest release: 7 months ago - 2 dependent packages - 33.9 thousand downloads total - 1 maintainer
hapFabia 1.44.0
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rar...3 versions - Latest release: 7 months ago - 21.5 thousand downloads total - 1 maintainer
Top 5.2% on bioconductor.org
3 versions - Latest release: 20 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
GENESIS 2.34.0
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzi...3 versions - Latest release: 20 days ago - 1 dependent package - 55.1 thousand downloads total - 32 stars on GitHub - 1 maintainer
Top 4.1% on bioconductor.org
3 versions - Latest release: 24 days ago - 4 dependent packages - 95.1 thousand downloads total - 13 stars on GitHub - 1 maintainer
GWASTools 1.50.0
Tools for Genome Wide Association Studies3 versions - Latest release: 24 days ago - 4 dependent packages - 95.1 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
3 versions - Latest release: 25 days ago - 1 dependent package - 58.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
SeqVarTools 1.42.0
Tools for variant data3 versions - Latest release: 25 days ago - 1 dependent package - 58.6 thousand downloads total - 3 stars on GitHub - 1 maintainer
Top 3.0% on bioconductor.org
3 versions - Latest release: 24 days ago - 11 dependent packages - 148 thousand downloads total - 62 stars on GitHub - 1 maintainer
metagenomeSeq 1.46.0
Statistical analysis for sparse high-throughput sequencing3 versions - Latest release: 24 days ago - 11 dependent packages - 148 thousand downloads total - 62 stars on GitHub - 1 maintainer
Top 3.3% on bioconductor.org
3 versions - Latest release: 24 days ago - 5 dependent packages - 122 thousand downloads total - 3 maintainers
missMethyl 1.38.0
Analysing Illumina HumanMethylation BeadChip Data3 versions - Latest release: 24 days ago - 5 dependent packages - 122 thousand downloads total - 3 maintainers
martini 1.24.0
GWAS Incorporating Networks3 versions - Latest release: 24 days ago - 7.58 thousand downloads total - 4 stars on GitHub - 1 maintainer
Top 4.6% on bioconductor.org
3 versions - Latest release: about 1 month ago - 1 dependent package - 54.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
qpgraph 2.38.0
Estimation of genetic and molecular regulatory networks from high-throughput genomics data3 versions - Latest release: about 1 month ago - 1 dependent package - 54.2 thousand downloads total - 1 stars on GitHub - 1 maintainer
GeneAccord 1.18.0 removed
Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients1 version - Latest release: 8 months ago - 4.41 thousand downloads total - 2 stars on GitHub - 1 maintainer
Related Keywords
Software
45
Genetics
24
SNP
24
Sequencing
21
ImmunoOncology
13
Clustering
10
MultipleComparison
9
GeneExpression
9
Transcription
8
Microarray
8
GeneRegulation
7
Visualization
7
GenomicVariation
6
QualityControl
6
Regression
5
Classification
5
GeneSetEnrichment
5
Microbiome
5
BiomedicalInformatics
5
DataImport
5
GenomeWideAssociation
4
SequenceMatching
4
Preprocessing
4
Alignment
4
Metagenomics
4
DNAMethylation
4
Epigenetics
4
GraphAndNetwork
4
Pathways
4
FeatureExtraction
4
Coverage
4
CopyNumberVariation
3
VariantDetection
3
VariantAnnotation
3
RNASeq
3
Network
3
Normalization
3
DNASeq
3
DataRepresentation
3
NetworkInference
3
FunctionalGenomics
3
Bayesian
3
Transcriptomics
3
DimensionReduction
3
PrincipalComponent
3
MathematicalBiology
2
CpGIsland
2
DifferentialMethylation
2
SystemsBiology
2
GUI
2
SingleCell
2
MethylationArray
2
WholeGenome
2
TwoChannel
2
genomics
2
HiddenMarkovModel
2
DifferentialExpression
2
r-package
2
NetworkEnrichment
1
FunctionalPrediction
1
TranscriptomeVariant
1
Workflow
1
EpigeneticsWorkflow
1
BiologicalQuestion
1
TargetedResequencing
1
ExomeSeq
1
transcription
1
mutual
1
exclusivity
1
cooccurrence
1
clonal
1
cancer
1
SomaticMutation
1
PatternLogic
1
systems-biology
1
snps
1
network-analysis
1
gwas
1
bioinformatics
1
StatisticalMethod
1
BiocViews
1
AlternativeSplicing
1
OneChannel
1
SNPsAndGeneticVariability
1
StructuralPrediction
1
CRISPR
1
transcriptomevariant
1
transcriptomics
1
variant
1
MultipleSequenceAlignment
1
IndelDetection
1
GenomeAnnotation
1
GeneFusionDetection
1
ChIPSeq
1
ancestry
1
cancer-genomics
1
exome-sequencing
1
whole-genome-sequencing
1
rna-sequencing
1
rna-seq
1