Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "BiologicalQuestion" keyword
CNVMetrics 1.6.0
Copy Number Variant Metrics3 versions - Latest release: 6 months ago - 2.19 thousand downloads total - 5 stars on GitHub - 1 maintainer
musicatk 1.12.0
Mutational Signature Comprehensive Analysis Toolkit3 versions - Latest release: 6 months ago - 4.83 thousand downloads total - 12 stars on GitHub - 1 maintainer
OGRE 1.6.0
Calculate, visualize and analyse overlap between genomic regions3 versions - Latest release: 6 months ago - 2.13 thousand downloads total - 2 stars on GitHub - 1 maintainer
pram 1.18.0
Pooling RNA-seq datasets for assembling transcript models3 versions - Latest release: 7 months ago - 5.49 thousand downloads total - 1 stars on GitHub - 1 maintainer
NoRCE 1.14.0
NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment3 versions - Latest release: 6 months ago - 4.63 thousand downloads total - 1 stars on GitHub - 1 maintainer
rexposome 1.24.1
Exposome exploration and outcome data analysis3 versions - Latest release: 7 months ago - 1 dependent package - 10.3 thousand downloads total - 1 maintainer
OMICsPCA 1.20.0
An R package for quantitative integration and analysis of multiple omics assays from heterogeneou...3 versions - Latest release: 7 months ago - 7.29 thousand downloads total - 1 maintainer
similaRpeak 1.34.0
Metrics to estimate a level of similarity between two ChIP-Seq profiles3 versions - Latest release: 7 months ago - 1 dependent package - 14 thousand downloads total - 7 stars on GitHub - 1 maintainer
methylInheritance 1.26.0
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multip...3 versions - Latest release: 7 months ago - 1 dependent package - 9.5 thousand downloads total - 0 stars on GitHub - 1 maintainer
TFHAZ 1.24.0
Transcription Factor High Accumulation Zones3 versions - Latest release: 7 months ago - 7.41 thousand downloads total - 1 maintainer
RJMCMCNucleosomes 1.26.0
Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-rea...3 versions - Latest release: 7 months ago - 9.13 thousand downloads total - 0 stars on GitHub - 1 maintainer
GSALightning 1.30.0
Fast Permutation-based Gene Set Analysis3 versions - Latest release: 7 months ago - 10.1 thousand downloads total - 5 stars on GitHub - 1 maintainer
INDEED 2.16.0
Interactive Visualization of Integrated Differential Expression and Differential Network Analysis...3 versions - Latest release: 7 months ago - 5.56 thousand downloads total - 4 stars on GitHub - 2 maintainers
decompTumor2Sig 2.18.0
Decomposition of individual tumors into mutational signatures by signature refitting3 versions - Latest release: 7 months ago - 1 dependent package - 8.89 thousand downloads total - 1 maintainer
methInheritSim 1.24.0
Simulating Whole-Genome Inherited Bisulphite Sequencing Data3 versions - Latest release: 7 months ago - 1 dependent package - 8.46 thousand downloads total - 1 stars on GitHub - 1 maintainer
deltaCaptureC 1.16.1
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data4 versions - Latest release: about 1 month ago - 4.87 thousand downloads total - 1 maintainer
TFARM 1.24.0
Transcription Factors Association Rules Miner3 versions - Latest release: 7 months ago - 7.46 thousand downloads total - 1 maintainer
MetID 1.20.0
Network-based prioritization of putative metabolite IDs3 versions - Latest release: 7 months ago - 5.66 thousand downloads total - 1 stars on GitHub - 1 maintainer
TrajectoryGeometry 1.10.1
This Package Discovers Directionality in Time and Pseudo-times Series of Gene Expression Patterns4 versions - Latest release: 2 months ago - 2.54 thousand downloads total - 1 maintainer
consensusSeekeR 1.30.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...3 versions - Latest release: 7 months ago - 2 dependent packages - 12.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
ChIPanalyser 1.24.0
ChIPanalyser: Predicting Transcription Factor Binding Sites3 versions - Latest release: 7 months ago - 8.35 thousand downloads total - 1 maintainer
YAPSA 1.28.0
Yet Another Package for Signature Analysis3 versions - Latest release: 7 months ago - 16.5 thousand downloads total - 1 maintainer
discordant 1.26.0
The Discordant Method: A Novel Approach for Differential Correlation3 versions - Latest release: 7 months ago - 11.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
CoSIA 1.2.0
An Investigation Across Different Species and Tissues3 versions - Latest release: 7 months ago - 1.05 thousand downloads total - 1 maintainer
CIMICE 1.10.0
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution3 versions - Latest release: 7 months ago - 3.06 thousand downloads total - 0 stars on GitHub - 1 maintainer
OncoSimulR 4.4.0
Forward Genetic Simulation of Cancer Progression with Epistasis3 versions - Latest release: 7 months ago - 15.9 thousand downloads total - 6 stars on GitHub - 1 maintainer
tricycle 1.10.0
tricycle: Transferable Representation and Inference of cell cycle3 versions - Latest release: 7 months ago - 1 dependent package - 7.04 thousand downloads total - 15 stars on GitHub - 1 maintainer
epimutacions 1.6.1
Robust outlier identification for DNA methylation data4 versions - Latest release: 6 months ago - 2.28 thousand downloads total - 0 stars on GitHub - 1 maintainer
projectR 1.20.0
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering3 versions - Latest release: 19 days ago - 1 dependent package - 7.22 thousand downloads total - 62 stars on GitHub - 1 maintainer
enrichViewNet 1.2.0
From functional enrichment results to biological networks2 versions - Latest release: 21 days ago - 930 downloads total - 5 stars on GitHub - 1 maintainer
methylclock 1.10.0
Methylclock - DNA methylation-based clocks3 versions - Latest release: 22 days ago - 6.34 thousand downloads total - 32 stars on GitHub - 1 maintainer
qsvaR 1.8.0
Generate Quality Surrogate Variable Analysis for Degradation Correction3 versions - Latest release: about 1 month ago - 2.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
VplotR 1.14.0
Set of tools to make V-plots and compute footprint profiles4 versions - Latest release: about 1 month ago - 3.73 thousand downloads total - 8 stars on GitHub - 1 maintainer
Related Keywords
Software
33
StatisticalMethod
14
Sequencing
11
Transcription
7
Coverage
6
r
6
ImmunoOncology
6
MultipleComparison
5
bioconductor
5
DifferentialExpression
5
ChIPSeq
5
DNAMethylation
4
Genetics
4
ResearchField
4
WorkflowStep
4
SingleCell
4
SomaticMutation
4
Normalization
3
BiomedicalInformatics
3
Clustering
3
DataImport
3
Epigenetics
3
Infrastructure
3
GeneExpression
3
Technology
3
RNASeq
3
Visualization
3
r-package
3
DimensionReduction
2
DNASeq
2
GenomicVariation
2
GUI
2
NucleosomePositioning
2
inheritance
2
Network
2
PeakDetection
2
WholeGenome
2
MethylSeq
2
DifferentialMethylation
2
Alignment
2
DataRepresentation
2
GenomeAnnotation
2
Preprocessing
2
GeneSetEnrichment
2
Transcriptomics
2
GO
2
bioconductor-package
2
metrics
2
network
1
brain
1
degradation
1
KEGG
1
AssayDomain
1
human
1
simulation
1
methylation
1
bisulphite-sequencing
1
SNP
1
qsva
1
rstats
1
Metabolomics
1
MassSpectrometry
1
ATACSeq
1
consensus-regions
1
genomic-ranges
1
functional-enrichment
1
cystocape
1
NetworkEnrichment
1
ChipOnChip
1
GeneRegulation
1
FunctionalPrediction
1
SequenceMatching
1
Microarray
1
Phylogenetics
1
mRNAMicroarray
1
ThirdPartyClient
1
GraphAndNetwork
1
NetworkInference
1
reversible-jump-mcmc
1
FunctionalGenomics
1
EpigeneticsWorkflow
1
ExperimentalDesign
1
Classification
1
GenomeAssembly
1
GeneTarget
1
transcript-model
1
rna-seq
1
genome-annotation
1
GenePrediction
1
Metagenomics
1
Annotation
1
VariantAnnotation
1
r-language
1
package
1
copy-number-variation
1
cnv
1
CopyNumberVariation
1
nucleosomes
1
nucleosome-positioning
1
multinomial-dirichlet-prior
1