Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "PeakDetection" keyword
geneXtendeR 1.28.0
Optimized Functional Annotation Of ChIP-seq Data3 versions - Latest release: 6 months ago - 13.5 thousand downloads total - 9 stars on GitHub - 1 maintainer
exomePeak2 1.14.3
Peak Calling and differential analysis for MeRIP-Seq5 versions - Latest release: 5 months ago - 8.19 thousand downloads total - 23 stars on GitHub - 1 maintainer
Top 8.5% on bioconductor.org
3 versions - Latest release: 6 months ago - 2 dependent packages - 197 thousand downloads total - 6 stars on GitHub - 1 maintainer
MassSpecWavelet 1.68.0 💰
Peak Detection for Mass Spectrometry data using wavelet-based algorithms3 versions - Latest release: 6 months ago - 2 dependent packages - 197 thousand downloads total - 6 stars on GitHub - 1 maintainer
chromstaR 1.28.0
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data3 versions - Latest release: 6 months ago - 14.1 thousand downloads total - 7 stars on GitHub - 1 maintainer
CAGEfightR 1.22.0
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor3 versions - Latest release: 6 months ago - 1 dependent package - 18.7 thousand downloads total - 8 stars on GitHub - 1 maintainer
PeacoQC 1.12.0
Peak-based selection of high quality cytometry data3 versions - Latest release: 6 months ago - 1 dependent package - 7.69 thousand downloads total - 14 stars on GitHub - 1 maintainer
peakPantheR 1.16.1
Peak Picking and Annotation of High Resolution Experiments4 versions - Latest release: 3 months ago - 5.72 thousand downloads total - 12 stars on GitHub - 1 maintainer
Linnorm 2.26.0
Linear model and normality based normalization and transformation method (Linnorm)3 versions - Latest release: 7 months ago - 1 dependent package - 22.4 thousand downloads total - 1 maintainer
BasicSTARRseq 1.30.0
Basic peak calling on STARR-seq data3 versions - Latest release: 7 months ago - 12 thousand downloads total - 1 maintainer
DEScan2 1.22.0
Differential Enrichment Scan 23 versions - Latest release: 7 months ago - 8.27 thousand downloads total - 1 maintainer
idr2d 1.16.0
Irreproducible Discovery Rate for Genomic Interactions Data3 versions - Latest release: 7 months ago - 5.25 thousand downloads total - 1 maintainer
CexoR 1.40.0
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates3 versions - Latest release: 7 months ago - 18.6 thousand downloads total - 1 maintainer
TRESS 1.8.0
Toolbox for mRNA epigenetics sequencing analysis3 versions - Latest release: 7 months ago - 1 dependent package - 3.14 thousand downloads total - 1 maintainer
gcapc 1.26.0
GC Aware Peak Caller3 versions - Latest release: 7 months ago - 1 dependent package - 9.54 thousand downloads total - 9 stars on GitHub - 1 maintainer
normr 1.28.0
Normalization and difference calling in ChIP-seq data3 versions - Latest release: 7 months ago - 15.7 thousand downloads total - 11 stars on GitHub - 1 maintainer
spatzie 1.8.0
Identification of enriched motif pairs from chromatin interaction data3 versions - Latest release: 7 months ago - 2.36 thousand downloads total - 1 maintainer
NADfinder 1.26.0
Call wide peaks for sequencing data3 versions - Latest release: 7 months ago - 9.86 thousand downloads total - 2 maintainers
consensusSeekeR 1.30.0
Detection of consensus regions inside a group of experiences using genomic positions and genomic ...3 versions - Latest release: 7 months ago - 2 dependent packages - 12.7 thousand downloads total - 1 stars on GitHub - 1 maintainer
ChIPanalyser 1.24.0
ChIPanalyser: Predicting Transcription Factor Binding Sites3 versions - Latest release: 7 months ago - 8.35 thousand downloads total - 1 maintainer
PIPETS 1.0.0
Poisson Identification of PEaks from Term-Seq data1 version - Latest release: about 1 month ago - 293 downloads total - 0 stars on GitHub - 1 maintainer
ptairMS 1.12.0
Pre-processing PTR-TOF-MS Data3 versions - Latest release: 23 days ago - 2.85 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 2.4% on bioconductor.org
3 versions - Latest release: 24 days ago - 2 dependent packages - 227 thousand downloads total - 1 maintainer
DiffBind 3.14.0
Differential Binding Analysis of ChIP-Seq Peak Data3 versions - Latest release: 24 days ago - 2 dependent packages - 227 thousand downloads total - 1 maintainer
yamss 1.30.0
Tools for high-throughput metabolomics3 versions - Latest release: about 1 month ago - 11 thousand downloads total - 3 stars on GitHub - 1 maintainer
Damsel 1.0.0
Damsel: an end to end analysis of DamID1 version - Latest release: about 1 month ago - 0 stars on GitHub - 1 maintainer
proFIA 1.26.0 removed
Preprocessing of FIA-HRMS data1 version - Latest release: 8 months ago - 8.96 thousand downloads total - 1 maintainer
Related Keywords
Software
25
Sequencing
12
ChIPSeq
9
Coverage
9
GeneRegulation
7
Transcription
6
FunctionalGenomics
6
MassSpectrometry
5
DifferentialPeakCalling
5
Genetics
5
Epigenetics
5
Preprocessing
5
Metabolomics
4
Normalization
4
DifferentialMethylation
4
ImmunoOncology
4
MultipleComparison
4
DataImport
4
Classification
3
HistoneModification
3
RNASeq
3
Alignment
3
Transcriptomics
2
BatchEffect
2
DNA3DStructure
2
HiC
2
RIPSeq
2
GeneExpression
2
BiologicalQuestion
2
bioconductor
2
ATACSeq
2
Visualization
2
Proteomics
2
MethylSeq
2
r
2
ChipOnChip
2
Annotation
2
NaturalLanguageProcessing
1
GenomeAnnotation
1
GO
1
Bayesian
1
DNASeq
1
consensus-regions
1
genomic-ranges
1
SequenceMatching
1
WorkflowStep
1
BiomedicalInformatics
1
CellBiology
1
DNaseSeq
1
ReportWriting
1
GenePrediction
1
GeneSetEnrichment
1
Lipidomics
1
HiddenMarkovModel
1
DataRepresentation
1
GenomeBrowsers
1
functional-annotation
1
epigenetics
1
computational-biology
1
FlowCytometry
1
QualityControl
1
chip-seq
1
feature-detection
1
mass-spectrometry
1
metabolomics
1
c
1
Clustering
1
DifferentialExpression
1
Network
1
SingleCell
1
bioinformatics
1
FunctionalPrediction
1