Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "mass-spectrometry" keyword
rawDiag 0.99.34
Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful2 versions - Latest release: about 1 month ago - 67 downloads total - 36 stars on GitHub - 1 maintainer
Top 1.9% on bioconductor.org
4 versions - Latest release: about 1 month ago - 30 dependent packages - 397 thousand downloads total - 120 stars on GitHub - 1 maintainer
MSnbase 2.30.1
Base Functions and Classes for Mass Spectrometry and Proteomics4 versions - Latest release: about 1 month ago - 30 dependent packages - 397 thousand downloads total - 120 stars on GitHub - 1 maintainer
Top 1.5% on bioconductor.org
6 versions - Latest release: 18 days ago - 15 dependent packages - 853 thousand downloads total - 157 stars on GitHub - 1 maintainer
xcms 4.2.1
LC-MS and GC-MS Data Analysis6 versions - Latest release: 18 days ago - 15 dependent packages - 853 thousand downloads total - 157 stars on GitHub - 1 maintainer
CompoundDb 1.6.0
Creating and Using (Chemical) Compound Annotation Databases3 versions - Latest release: 7 months ago - 3 dependent packages - 16.9 thousand downloads total - 16 stars on GitHub - 1 maintainer
peakPantheR 1.16.1
Peak Picking and Annotation of High Resolution Experiments4 versions - Latest release: 3 months ago - 5.72 thousand downloads total - 12 stars on GitHub - 1 maintainer
MsQuality 1.2.1
MsQuality - Quality metric calculation from Spectra and MsExperiment objects4 versions - Latest release: 2 months ago - 1.6 thousand downloads total - 7 stars on GitHub - 1 maintainer
Top 5.0% on bioconductor.org
4 versions - Latest release: 6 months ago - 19 dependent packages - 157 thousand downloads total - 16 stars on GitHub - 1 maintainer
MsCoreUtils 1.14.1
Core Utils for Mass Spectrometry Data4 versions - Latest release: 6 months ago - 19 dependent packages - 157 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 8.6% on bioconductor.org
4 versions - Latest release: 25 days ago - 15 dependent packages - 47.5 thousand downloads total - 31 stars on GitHub - 1 maintainer
Spectra 1.14.0
Spectra Infrastructure for Mass Spectrometry Data4 versions - Latest release: 25 days ago - 15 dependent packages - 47.5 thousand downloads total - 31 stars on GitHub - 1 maintainer
TargetDecoy 1.8.0
Diagnostic Plots to Evaluate the Target Decoy Approach3 versions - Latest release: 7 months ago - 2.39 thousand downloads total - 0 stars on GitHub - 1 maintainer
MsDataHub 1.2.0
Mass Spectrometry Data on ExperimentHub3 versions - Latest release: 7 months ago - 2 dependent packages - 1.52 thousand downloads total - 1 stars on GitHub - 1 maintainer
PSMatch 1.6.0
Handling and Managing Peptide Spectrum Matches3 versions - Latest release: 7 months ago - 2 dependent packages - 6.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
MSstatsLOBD 1.10.0
Assay characterization: estimation of limit of blanc(LoB) and limit of detection(LOD)3 versions - Latest release: 7 months ago - 2.85 thousand downloads total - 0 stars on GitHub - 1 maintainer
metabCombiner 1.14.0
Method for Combining LC-MS Metabolomics Feature Measurements3 versions - Latest release: 16 days ago - 3.49 thousand downloads total - 6 stars on GitHub - 1 maintainer
MetaboCoreUtils 1.12.0
Core Utils for Metabolomics Data3 versions - Latest release: 18 days ago - 5 dependent packages - 33.8 thousand downloads total - 7 stars on GitHub - 1 maintainer
topdownr 1.26.0
Investigation of Fragmentation Conditions in Top-Down Proteomics3 versions - Latest release: 19 days ago - 8.43 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 7.0% on bioconductor.org
3 versions - Latest release: 24 days ago - 20 dependent packages - 979 thousand downloads total - 7 stars on GitHub - 1 maintainer
ProtGenerics 1.36.0
Generic infrastructure for Bioconductor mass spectrometry packages3 versions - Latest release: 24 days ago - 20 dependent packages - 979 thousand downloads total - 7 stars on GitHub - 1 maintainer
QFeatures 1.14.1
Quantitative features for mass spectrometry data4 versions - Latest release: 20 days ago - 6 dependent packages - 35.5 thousand downloads total - 20 stars on GitHub - 1 maintainer
scp 1.14.0
Mass Spectrometry-Based Single-Cell Proteomics Data Analysis3 versions - Latest release: 21 days ago - 5.67 thousand downloads total - 18 stars on GitHub - 1 maintainer
Top 5.5% on bioconductor.org
3 versions - Latest release: 24 days ago - 3 dependent packages - 51.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
rpx 2.12.0
R Interface to the ProteomeXchange Repository3 versions - Latest release: 24 days ago - 3 dependent packages - 51.5 thousand downloads total - 4 stars on GitHub - 1 maintainer
msPurity 1.30.0
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabol...3 versions - Latest release: 24 days ago - 12.4 thousand downloads total - 15 stars on GitHub - 1 maintainer
MsBackendMsp 1.8.0
Mass Spectrometry Data Backend for NIST msp Files3 versions - Latest release: 25 days ago - 4.83 thousand downloads total - 4 stars on GitHub - 1 maintainer
TargetSearch 2.6.0
A package for the analysis of GC-MS metabolite profiling data4 versions - Latest release: 30 days ago - 30.7 thousand downloads total - 4 stars on GitHub - 1 maintainer
rawrr 1.12.0
Direct Access to Orbitrap Data and Beyond5 versions - Latest release: about 1 month ago - 1 dependent package - 9.26 thousand downloads total - 50 stars on GitHub - 1 maintainer
Related Keywords
MassSpectrometry
23
Software
23
Proteomics
16
Metabolomics
14
metabolomics
12
proteomics
12
Infrastructure
11
bioconductor
11
r
10
rstats
6
ImmunoOncology
6
QualityControl
4
DataImport
3
rpackage
2
multiplatform
2
Preprocessing
2
feature-detection
2
fast
2
data
2
CellBasedAssays
1
topdown
1
GeneExpression
1
SingleCell
1
single-cell
1
software
1
ThirdPartyClient
1
Coverage
1
proteomexchange
1
bioconductor-package
1
dims
1
fragmentation
1
lc-ms
1
lc-msms
1
precursor-ion-purity
1
infrastructure
1
DecisionTree
1
bioc
1
gc-ms
1
orbitrap-ms
1
ShinyApps
1
orbitrap
1
visualization
1
bioinformatics
1
proteomics-data
1
visualisation
1
peak-detection
1
Annotation
1
annotation
1
databases
1
PeakDetection
1
qc
1
utils
1
Visualization
1
ExperimentHubSoftware
1
r-package
1
peptide-spectrum-matches
1
DifferentialExpression
1
Normalization
1
OneChannel
1
TwoChannel
1