Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
bioconductor.org "mRNAMicroarray" keyword
Top 0.3% on bioconductor.org
5 versions - Latest release: 30 days ago - 322 dependent packages - 5.11 million downloads total - 1 maintainer
limma 3.60.0
Linear Models for Microarray Data5 versions - Latest release: 30 days ago - 322 dependent packages - 5.11 million downloads total - 1 maintainer
EventPointer 3.10.0
An effective identification of alternative splicing events using junction arrays and RNA-Seq data3 versions - Latest release: 6 months ago - 11.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
roastgsa 1.0.0
Rotation based gene set analysis2 versions - Latest release: 7 months ago - 881 downloads total - 0 stars on GitHub - 1 maintainer
erccdashboard 1.36.0
Assess Differential Gene Expression Experiments with ERCC Controls3 versions - Latest release: 6 months ago - 19 thousand downloads total - 7 stars on GitHub - 1 maintainer
GWENA 1.12.0
Pipeline for augmented co-expression analysis3 versions - Latest release: 6 months ago - 7.57 thousand downloads total - 18 stars on GitHub - 1 maintainer
SGCP 1.2.0
SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expr...3 versions - Latest release: 7 months ago - 1.85 thousand downloads total - 1 stars on GitHub - 1 maintainer
MAGAR 1.10.0
MAGAR: R-package to compute methylation Quantitative Trait Loci (methQTL) from DNA methylation an...3 versions - Latest release: 7 months ago - 4.57 thousand downloads total - 0 stars on GitHub - 1 maintainer
NanoStringNCTools 1.10.1
NanoString nCounter Tools4 versions - Latest release: about 1 month ago - 2 dependent packages - 14.3 thousand downloads total - 1 maintainer
MetaVolcanoR 1.16.0
Gene Expression Meta-analysis Visualization Tool3 versions - Latest release: 7 months ago - 10.5 thousand downloads total - 1 maintainer
sigFeature 1.20.0
sigFeature: Significant feature selection using SVM-RFE & t-statistic3 versions - Latest release: 7 months ago - 12.7 thousand downloads total - 1 maintainer
AMARETTO 1.18.0
Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis an...3 versions - Latest release: 7 months ago - 7.55 thousand downloads total - 1 maintainer
CEMiTool 1.26.1
Co-expression Modules identification Tool4 versions - Latest release: about 1 month ago - 28.3 thousand downloads total - 1 maintainer
transite 1.20.1
RNA-binding protein motif analysis4 versions - Latest release: 3 months ago - 6.54 thousand downloads total - 1 maintainer
goSTAG 1.26.0
A tool to use GO Subtrees to Tag and Annotate Genes within a set3 versions - Latest release: 7 months ago - 9.53 thousand downloads total - 1 maintainer
acde 1.32.0
Artificial Components Detection of Differentially Expressed Genes3 versions - Latest release: 7 months ago - 14.7 thousand downloads total - 1 maintainer
deco 1.18.0 removed
Decomposing Heterogeneous Cohorts using Omic Data Profiling2 versions - Latest release: 7 months ago - 4.59 thousand downloads total - 4 stars on GitHub - 1 maintainer
GeomxTools 3.6.2
NanoString GeoMx Tools4 versions - Latest release: 3 months ago - 3 dependent packages - 15.9 thousand downloads total - 1 maintainer
discordant 1.26.0
The Discordant Method: A Novel Approach for Differential Correlation3 versions - Latest release: 7 months ago - 11.6 thousand downloads total - 10 stars on GitHub - 1 maintainer
fcoex 1.16.0 removed
FCBF-based Co-Expression Networks for Single Cells2 versions - Latest release: 7 months ago - 5.4 thousand downloads total - 1 maintainer
topconfects 1.18.0
Top Confident Effect Sizes3 versions - Latest release: 7 months ago - 3 dependent packages - 10.8 thousand downloads total - 13 stars on GitHub - 1 maintainer
Top 5.4% on bioconductor.org
3 versions - Latest release: 23 days ago - 48.9 thousand downloads total - 1 maintainer
limmaGUI 1.80.0
GUI for limma Package With Two Color Microarrays3 versions - Latest release: 23 days ago - 48.9 thousand downloads total - 1 maintainer
Top 5.3% on bioconductor.org
3 versions - Latest release: 23 days ago - 1 dependent package - 46.1 thousand downloads total - 1 maintainer
puma 3.46.0
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and ex...3 versions - Latest release: 23 days ago - 1 dependent package - 46.1 thousand downloads total - 1 maintainer
Top 4.8% on bioconductor.org
3 versions - Latest release: 24 days ago - 66 thousand downloads total - 1 maintainer
affylmGUI 1.78.0
GUI for limma Package with Affymetrix Microarrays3 versions - Latest release: 24 days ago - 66 thousand downloads total - 1 maintainer
iNETgrate 1.2.0
Integrates DNA methylation data with gene expression in a single gene network2 versions - Latest release: 24 days ago - 970 downloads total - 65 stars on GitHub - 1 maintainer
GEOexplorer 1.10.0
GEOexplorer: a webserver for gene expression analysis and visualisation3 versions - Latest release: about 1 month ago - 2.75 thousand downloads total - 4 stars on GitHub - 1 maintainer
EWCE 1.12.0
Expression Weighted Celltype Enrichment4 versions - Latest release: about 1 month ago - 8.86 thousand downloads total - 51 stars on GitHub - 1 maintainer
NanoStringQCPro 1.32.0 removed
Quality metrics and data processing methods for NanoString mRNA gene expression data1 version - Latest release: 8 months ago - 18.7 thousand downloads total - 1 maintainer
Related Keywords
Software
27
GeneExpression
23
RNASeq
19
Microarray
18
DifferentialExpression
15
Transcriptomics
12
Transcription
12
Clustering
10
Normalization
9
DataImport
9
ImmunoOncology
9
Preprocessing
8
MultipleComparison
8
QualityControl
8
Sequencing
8
GeneSetEnrichment
8
Regression
7
TimeCourse
7
Bayesian
7
BatchEffect
7
Network
7
TwoChannel
6
GraphAndNetwork
6
Proteomics
6
ProprietaryPlatforms
6
OneChannel
6
AlternativeSplicing
6
DifferentialSplicing
6
MicroRNAArray
5
Genetics
5
ExonArray
5
BiomedicalInformatics
5
Visualization
4
NetworkEnrichment
4
Pathways
4
SystemsBiology
4
Epigenetics
3
FunctionalGenomics
3
Classification
3
SingleCell
2
GUI
2
MethylationArray
2
CellBasedAssays
2
FeatureExtraction
2
GenePrediction
2
CopyNumberVariation
2
bioinformatics
2
DimensionReduction
2
transcriptomics
2
StatisticalMethod
2
PrincipalComponent
2
DNAMethylation
2
DifferentialMethylation
2
Metabolomics
2
GO
2
Survival
2
Cheminformatics
2
CellBiology
2
stratification
1
ExperimentalDesign
1
sampling-methods
1
r
1
patients-stratification
1
omics
1
omic-data-profiling
1
heterogeneous-populations
1
Spatial
1
BiologicalQuestion
1
ChipOnChip
1
HTA2.0
1
KEGG
1
NetworkInference
1
core-services
1
cran
1
r-package
1
deconvolution
1
single-cell
1
single-cell-rna-seq
1
ReportWriting
1
co-expression
1
enrichment-analysis
1
gene
1
network-analysis
1
pipeline
1
NeuralNetwork
1
clustering
1
genecoexpressionnetwork
1
graphs
1
networkclustering
1
networks
1
self-training
1
semi-supervised-learning
1
unsupervised-learning
1
CpGIsland
1
GeneticVariability
1
MethylSeq
1
SNP
1
SupportVectorMachine
1
GeneRegulation
1
deco
1