Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioinformatic" keyword
pygenomes 0.1.0
a command-line tool for downloading genome data from UCSC ftp site.1 version - Latest release: almost 9 years ago - 2 dependent repositories - 9 downloads last month - 1 maintainer
libsam 0.1.8
Bio-Informatics sam file libraries.9 versions - Latest release: about 9 years ago - 3 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
unique-sam 0.2.4
Analyse sam file and keep the unique aligment record.12 versions - Latest release: about 9 years ago - 2 dependent repositories - 121 downloads last month - 1 maintainer
geodl 1.0b21
Dowload FASTQ files from GEO-NCBI with ease.11 versions - Latest release: over 3 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitLab.com - 1 maintainer
madt 0.0.1
Processing open-source amplicon database for ecology1 version - Latest release: about 1 year ago - 11 downloads last month - 1 maintainer
hydrocluster 0.2.0
Cluster analysis of hydrophobic or charged regions of macromolecules. The program is based on the...2 versions - Latest release: over 5 years ago - 1 dependent repositories - 15 downloads last month - 2 stars on GitHub - 1 maintainer
jacquard 1.1.5
Command-line tools to expedite analysis of Variant Call Format (VCF) files.11 versions - Latest release: over 3 years ago - 2 dependent repositories - 45 downloads last month - 7 stars on GitHub - 1 maintainer
extaxsi 0.3.9
Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic infor...11 versions - Latest release: over 2 years ago - 1 dependent repositories - 20 downloads last month - 4 stars on GitHub - 5 maintainers
pymacromol 0.1-dev-r117
Python module to read macro molecules and forcefield files and process it.1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
connor 0.6.1
Command-line tool to deduplicate reads in bam files based on custom inline barcoding.5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 40 downloads last month - 21 stars on GitHub - 1 maintainer
zither 0.2
Command-line tool to pull raw depths and alt freqs from BAM file(s) based on an existing VCF, wri...1 version - Latest release: almost 9 years ago - 2 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
ggca 0.4.1
Computes efficiently the correlation (Pearson, Spearman or Kendall) and the p-value (two-sided) b...4 versions - Latest release: over 2 years ago - 1 dependent repositories - 74 downloads last month - 4 stars on GitHub - 1 maintainer
panisa 0.1.7
panISa is a software to search insertion sequence (IS) on resequencing data (bam file)9 versions - Latest release: 2 months ago - 1 dependent repositories - 98 downloads last month - 19 stars on GitHub - 1 maintainer
katana 0.1.2
Command-line tool to soft-clip reads based on primer locations.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 171 downloads last month - 5 stars on GitHub - 1 maintainer
Related Keywords
DNA-seq
4
exome-seq
4
BAM
3
python
3
bioinformatics
2
samfile
2
ecology
2
variant-call-format
2
ncbi
2
VCF
2
mmcif
1
macromol
1
structure
1
taxonomy-management
1
taxonomy-database
1
taxonomic-classifications
1
molecular-biology
1
molecular
1
genome
1
pdb
1
forcefield
1
protein
1
mRNA
1
expression
1
modulation
1
correlation
1
p-value
1
correlation-analysis
1
gene-expression
1
gene-expression-modulation
1
rust
1
IS
1
bacteria
1
download
1
ucsc
1
biology
1
parser
1
unique
1
geo
1
fastq
1
genomic
1
sra
1
amplicon
1
molecular modeling
1
protein structure
1
hydrophobic core
1
hydrophobic cluster
1
DBSCAN
1
bioinformatics-tool
1
protein-structure
1
python3
1
molecular data
1
visualization
1
taxonomy
1
converter
1
data
1