Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "ncbi" keyword
taxidtools 2.3.0
A Python Toolkit for Taxonomy11 versions - Latest release: 28 days ago - 1 dependent repositories - 489 downloads last month - 0 stars on GitHub - 1 maintainer
mritaxonomy 1.0.0
MRIGlobal's taxonomy related operators5 versions - Latest release: 3 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
multisub 1.0
SARS-CoV-2 data converter between Genbank/GISAID/ENA formats1 version - Latest release: almost 3 years ago - 1 dependent repositories - 4 downloads last month - 34 stars on GitHub - 1 maintainer
orthoevol 0.9.0a2
This package aids in the analysis of orthologous genes.1 version - Latest release: over 6 years ago - 1 dependent repositories - 4 downloads last month - 28 stars on GitHub - 2 maintainers
ncfp 0.2.0
ncfp is a script and module that facilitates recovery of nucleotide sequences from NCBI encoding ...3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 21 downloads last month - 3 stars on GitHub - 1 maintainer
clinvar-this 0.14.6
ClinVar Submission via API Made Easy30 versions - Latest release: 6 months ago - 578 downloads last month - 6 stars on GitHub - 1 maintainer
ncbi-submit 0.8.1
A tool for submitting to NCBI (SRA, BioSample, & GenBank).13 versions - Latest release: 3 months ago - 27 downloads last month - 2 stars on GitHub - 1 maintainer
Top 4.2% on pypi.org
27 versions - Latest release: over 4 years ago - 6 dependent packages - 24 dependent repositories - 21.4 thousand downloads last month - 56 stars on GitHub - 2 maintainers
eutils 0.6.0
"Python interface to NCBI's eutilities API"27 versions - Latest release: over 4 years ago - 6 dependent packages - 24 dependent repositories - 21.4 thousand downloads last month - 56 stars on GitHub - 2 maintainers
medirect 0.29.0
Multithreaded ncbi edirect and ftract28 versions - Latest release: 4 months ago - 1 dependent repositories - 126 downloads last month - 1 maintainer
elastic-blast 1.2.0
ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective20 versions - Latest release: 6 months ago - 3 dependent repositories - 138 downloads last month - 36 stars on GitHub - 1 maintainer
geodl 1.0b21
Dowload FASTQ files from GEO-NCBI with ease.11 versions - Latest release: over 3 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitLab.com - 1 maintainer
Top 5.0% on pypi.org
51 versions - Latest release: 4 months ago - 4 dependent packages - 3 dependent repositories - 3.84 thousand downloads last month - 853 stars on GitHub - 1 maintainer
gget 0.28.4
Efficient querying of genomic databases directly into programming environments.51 versions - Latest release: 4 months ago - 4 dependent packages - 3 dependent repositories - 3.84 thousand downloads last month - 853 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
25 versions - Latest release: 11 months ago - 3 dependent packages - 8 dependent repositories - 556 downloads last month - 893 stars on GitHub - 2 maintainers
ncbi-genome-download 0.3.3
Download genome files from the NCBI FTP server.25 versions - Latest release: 11 months ago - 3 dependent packages - 8 dependent repositories - 556 downloads last month - 893 stars on GitHub - 2 maintainers
pyncbi 0.1.6
Simple API for Python Integration with NCBI9 versions - Latest release: about 2 years ago - 1 dependent repositories - 19 downloads last month - 4 stars on GitHub - 1 maintainer
ntdownload 1.7.1
Easily updatable local NCBI taxonomy dumps file copy5 versions - Latest release: over 1 year ago - 3 dependent packages - 26 downloads last month - 4 stars on GitHub - 1 maintainer
extaxsi 0.3.9
Extaxsi is a bioinformatic library aimed to elaborate and visualize molecular and taxonomic infor...11 versions - Latest release: over 2 years ago - 1 dependent repositories - 20 downloads last month - 4 stars on GitHub - 5 maintainers
datasnakes 0.1.1a1
This package helps in the analysis of orthologous genes.2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 5 downloads last month - 27 stars on GitHub - 1 maintainer
Top 5.2% on pypi.org
376 versions - Latest release: about 1 month ago - 4 dependent packages - 3 dependent repositories - 2.06 thousand downloads last month - 296 stars on GitHub - 1 maintainer
ncbi-datasets-pylib 16.6.1
Easily gather data from across NCBI databases376 versions - Latest release: about 1 month ago - 4 dependent packages - 3 dependent repositories - 2.06 thousand downloads last month - 296 stars on GitHub - 1 maintainer
ntmirror 1.4.1
Easily updatable local NCBI taxonomy database copy6 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 44 downloads last month - 4 stars on GitHub - 1 maintainer
ncbitax2lin 2.3.2
A tool that converts NCBI taxonomy dump into lineages11 versions - Latest release: about 2 years ago - 2 dependent repositories - 129 downloads last month - 129 stars on GitHub - 1 maintainer
genomes-attributes-viewer 1.3
Example application of fastsubtrees3 versions - Latest release: over 1 year ago - 21 downloads last month - 4 stars on GitHub - 1 maintainer
multitax 1.3.1
Python package to obtain, parse and explore biological and custom taxonomies7 versions - Latest release: about 1 year ago - 1 dependent repositories - 64 downloads last month - 33 stars on GitHub - 1 maintainer
taxonomy-ranks 0.0.10
To get taxonomy ranks information with ETE3 from NCBI Taxonomy database.10 versions - Latest release: almost 4 years ago - 1 dependent repositories - 37 downloads last month - 9 stars on GitHub - 1 maintainer
metatools-ncbi 0.2.1
Download biosample and SRA runinfo metadata from NCBI7 versions - Latest release: over 4 years ago - 1 dependent repositories - 24 downloads last month - 3 stars on GitHub - 1 maintainer
taxmagick 0.2
Tools for visualizing ncbi taxonomic data2 versions - Latest release: about 6 years ago - 1 dependent repositories - 18 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
10 versions - Latest release: almost 2 years ago - 2 dependent repositories - 278 downloads last month - 37 stars on GitHub - 1 maintainer
taxadb 0.12.1
locally query the ncbi taxonomy10 versions - Latest release: almost 2 years ago - 2 dependent repositories - 278 downloads last month - 37 stars on GitHub - 1 maintainer
makura 1.2.0
NCBI Genome downloader4 versions - Latest release: about 1 year ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
moose-classifier 0.9
Alignment based taxonomic classifier4 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
getisolationsources 1.5.2
Retrieves isolation sources from NCBI given the set of sequences with specified accession numbers...2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
36 versions - Latest release: 12 months ago - 6 dependent packages - 5 dependent repositories - 11.5 thousand downloads last month - 363 stars on GitHub - 2 maintainers
genomepy 0.16.1
Genes and genomes at your fingertips36 versions - Latest release: 12 months ago - 6 dependent packages - 5 dependent repositories - 11.5 thousand downloads last month - 363 stars on GitHub - 2 maintainers
bio-juno 1.0.0
Juno: read data generator1 version - Latest release: about 2 years ago - 15 downloads last month - 0 stars on GitHub - 1 maintainer
pubmed2 0.0.8
search pubmeds quickly8 versions - Latest release: about 5 years ago - 1 dependent repositories - 71 downloads last month - 6 stars on GitHub - 1 maintainer
rrat 0.6
Ribosomal RNA Allele Tree6 versions - Latest release: about 6 years ago - 1 dependent repositories - 34 downloads last month - 0 stars on GitHub - 1 maintainer
pubmedpy 0.0.0 💰
Utilities for interacting with NCBI EUtilities relating to PubMed1 version - Latest release: over 4 years ago - 1 dependent repositories - 51 downloads last month - 9 stars on GitHub - 1 maintainer
pmidcite 0.0.47 💰
Turbocharge a PubMed literature search using citation data from the NIH41 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 631 downloads last month - 27 stars on GitHub - 1 maintainer
genome_collector 0.1.6
Easily download and store taxID genomes from NCBI7 versions - Latest release: over 4 years ago - 29 downloads last month - 21 stars on GitHub - 1 maintainer
scry-blast 0.6
A SCRY service to extend SPARQL with procedures that run NCBI's BLAST program4 versions - Latest release: about 8 years ago - 2 dependent repositories - 36 downloads last month - 1 maintainer
easy-entrez 0.3.7 💰
Python REST API for Entrez E-Utilities: stateless, easy to use, reliable.16 versions - Latest release: 8 months ago - 1 dependent repositories - 220 downloads last month - 61 stars on GitHub - 1 maintainer
pypubmed 1.1.4
Toolkits for NCBI Pubmed21 versions - Latest release: 9 months ago - 1 dependent repositories - 46 downloads last month - 23 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
21
python
17
taxonomy
12
ncbi-taxonomy
8
blast
6
pubmed
5
tree
4
biology
4
genomics
4
genetics
4
entrez
3
genbank
3
eutilities
3
ftp
3
database
3
data-science
3
subtree
3
subtree-extraction
3
api
3
subtree-query
3
genome
2
shell
2
sge
2
sequence-alignment
2
qsub
2
phylogenetics
2
uniprot
2
mirror
2
literature-search
2
data
2
NCBI
2
fastq
2
bioinformatic
2
sra
2
ensembl
2
genomes
2
pbs
2
orthology-inference
2
orthology
2
orthologues
2
orthologs
2
lineage
2
biosql
2
bash
2
pandas
2
taxdump
2
gene
1
assembly
1
annotation
1
UCSC
1
ranks
1
GENCODE
1
bioconda
1
ete3
1
ucsc
1
taxonomies
1
silva
1
pyhton-library
1
download
1
metadata
1
biosample
1
runinfo
1
genome-assembly
1
Ensembl
1
refseq
1
classifier
1
dna
1
rna
1
alignments
1
moose-classifier
1
kmer-counting
1
data-analysis
1
reads
1
synthetic-biology
1
taxid
1
scry
1
sparql
1
math
1
service
1
extension
1
e-utilities
1
rest
1
dbsnp
1
literature
1
mining
1
entrez-eutilities
1
gene-annotations
1
literature-mining
1
meta-analysis
1
pubmed-central
1
sci
1
crawler
1
rrndb
1
bibliometrics
1
citation-analysis
1
citation-counts
1
citation-downloader
1
citedby
1
command-line-tool
1
library
1