Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "fastq" keyword
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: 4 months ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: 8 months ago - 1 dependent repositories - 80 downloads last month - 11 stars on GitHub - 1 maintainer
fastq-dl 2.0.4
Download FASTQ files from SRA or ENA repositories.5 versions - Latest release: 10 months ago - 1 dependent repositories - 53 downloads last month - 257 stars on GitHub - 1 maintainer
biopython.convert 1.3.3
Interconvert various file formats supported by biopython. Supports querying records with JMESPath.9 versions - Latest release: almost 2 years ago - 45 downloads last month - 3 stars on GitHub - 1 maintainer
lrplots 0.7.0
Plot collection for Long Read Sequencing8 versions - Latest release: over 1 year ago - 1 dependent repositories - 34 downloads last month - 12 stars on GitHub - 1 maintainer
fuc 0.37.0 💰
Frequently used commands in bioinformatics38 versions - Latest release: 9 months ago - 1 dependent package - 2 dependent repositories - 407 downloads last month - 45 stars on GitHub - 1 maintainer
convertfq 0.1.0
convertFQ is used to convert either DNA2RNA or RNA2DNA in a fastq file1 version - Latest release: almost 2 years ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
hubmap-fastq-utils 0.2.5
FASTQ utility functions for HuBMAP computational pipelines2 versions - Latest release: almost 2 years ago - 2 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
fastq-and-furious 0.3.2
Fast handling of FASTQ files6 versions - Latest release: almost 3 years ago - 2 dependent repositories - 38 downloads last month - 50 stars on GitHub - 1 maintainer
geodl 1.0b21
Dowload FASTQ files from GEO-NCBI with ease.11 versions - Latest release: over 3 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitLab.com - 1 maintainer
itermae 0.6.0
Commandline tool for parsing NGS reads by multiple fuzzy regex operations8 versions - Latest release: about 3 years ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitLab.com - 1 maintainer
kmerdb 0.8.2 💰
Yet another corretion to the 'yet another correction to just a k-mer counter...'38 versions - Latest release: 28 days ago - 1 dependent repositories - 257 downloads last month - 12 stars on GitHub - 1 maintainer
mercat2 1.4.1
versatile k-mer counter and diversity estimator for database independent property analysis (DIPA)...8 versions - Latest release: 3 months ago - 1 dependent repositories - 20 downloads last month - 10 stars on GitHub - 2 maintainers
barcode-splitter 0.18.6
A utility to split multiple sequence files using multiple sets of barcodes7 versions - Latest release: almost 5 years ago - 70 downloads last month - 2 maintainers
zfq 1.0.0
FastQ file compressor1 version - Latest release: 4 months ago - 84 downloads last month - 0 stars on GitHub - 1 maintainer
pyfq 0.0.6
Fastq manipulations and quality check6 versions - Latest release: over 5 years ago - 1 dependent repositories - 11 downloads last month - 1 maintainer
exoclasma-fastq 0.9.0
Different file formats to FastQ, part of ExoClasma Suite1 version - Latest release: over 1 year ago - 7 downloads last month - 0 stars on GitHub - 2 maintainers
fast5seek 0.1.1
Get paths for fast5 files contained in BAM, SAM, or fastq.2 versions - Latest release: over 5 years ago - 1 dependent repositories - 25 downloads last month - 11 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
67 versions - Latest release: 3 months ago - 18 dependent packages - 28 dependent repositories - 16.7 thousand downloads last month - 235 stars on GitHub - 1 maintainer
pyfastx 2.1.0
pyfastx is a python module for fast random access to sequences from plain and gzipped FASTA/Q file67 versions - Latest release: 3 months ago - 18 dependent packages - 28 dependent repositories - 16.7 thousand downloads last month - 235 stars on GitHub - 1 maintainer
sequana-downsampling 0.9.0
downsample NGS data sets5 versions - Latest release: almost 2 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
sequana-merge-flowcells 0.9.3
Merge FastQ from different projects (flowcells) into single project1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 1 maintainer
demultiplex 1.2.2
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes9 versions - Latest release: over 2 years ago - 1 dependent repositories - 153 downloads last month - 27 stars on GitHub - 1 maintainer
fqtool 1.3.3
Tool to parse and filter FASTQ files8 versions - Latest release: over 6 years ago - 1 dependent repositories - 20 downloads last month - 1 maintainer
fastx-barber 0.1.5
FASTX trimming tools7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 44 downloads last month - 4 stars on GitHub - 1 maintainer
strandex 0.4.1
Strand-anchored regex for expansion or contraction of FASTQ files5 versions - Latest release: about 7 years ago - 3 dependent repositories - 33 downloads last month - 11 stars on GitHub - 1 maintainer
fastqwiper 2023.2.82
An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired rea...22 versions - Latest release: 7 months ago - 1 dependent repositories - 223 downloads last month - 16 stars on GitHub - 1 maintainer
mergegi 0.2.2
Merge MGI fastq files4 versions - Latest release: over 1 year ago - 1 dependent repositories - 21 downloads last month - 3 stars on GitHub - 2 maintainers
fastqsplitter 1.2.0
Splits FASTQ files evenly.3 versions - Latest release: over 4 years ago - 2 dependent packages - 3 dependent repositories - 273 downloads last month - 16 stars on GitHub - 1 maintainer
vcfwiper 2021.1.4 removed
A package to wipe out uncompliant VCF files1 version - Latest release: about 3 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
Top 8.7% on pypi.org
26 versions - Latest release: 7 months ago - 1 dependent repositories - 178 downloads last month - 458 stars on GitHub - 1 maintainer
biocode 0.11.0
Bioinformatics code libraries and scripts26 versions - Latest release: 7 months ago - 1 dependent repositories - 178 downloads last month - 458 stars on GitHub - 1 maintainer
bio-juno 1.0.0
Juno: read data generator1 version - Latest release: about 2 years ago - 15 downloads last month - 0 stars on GitHub - 1 maintainer
ktio 0.1
A collection of functions for fasta/fastq i/o in Python1 version - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
pydemult 0.4.1
Streamed and parallel demultiplexing of fastq files in python7 versions - Latest release: over 5 years ago - 1 dependent repositories - 34 downloads last month - 2 stars on GitHub - 1 maintainer
fastq 2.0.4
A simple FASTQ reader / toolbox for small to medium size projects without dependencies.9 versions - Latest release: 3 months ago - 1 dependent repositories - 412 downloads last month - 4 stars on GitHub - 1 maintainer
demort 0.2.4
DEmultiplexing MOnitoring Report Tool3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
19
fasta
9
ngs
6
python
5
genomics
4
sam
4
bam
4
sra
3
barcode
3
demultiplexing
2
regex
2
k-mer-frequency
2
gff
2
k-mer-counting
2
parser
2
nanopore
2
sequence
2
sequana
2
ncbi
2
demultiplex
2
snakemake
2
sequencing
2
bio
2
dna
2
NGS
1
genome
1
biology
1
downsampling
1
assembly
1
vizualisation
1
ont
1
fast5
1
fast5seek
1
juicer
1
conversion
1
check
1
quality
1
generation
1
next
1
compression
1
paired
1
protein
1
plotly
1
nucleotides
1
python3
1
pypi-package
1
parallelization
1
multithreading
1
toolbox
1
reader
1
FASTQ
1
i/o
1
reads
1
genomes
1
gff3
1
modules
1
scripts
1
split
1
merger
1
MGI
1
recovery
1
fix
1
corrupted
1
trimmer
1
trim
1
regular-expression
1
hacktoberfest
1
fastx-barber
1
fastx
1
extract-flags
1
bioinformatics-tool
1
trimming
1
read
1
flowcell
1
merge
1
vcf
1
maf
1
gtf
1
cram
1
cli
1
bed
1
api
1
qualitycontrol
1
plot
1
longread
1
filter
1
embl
1
genbank
1
biopython
1
convert
1
ENA
1
SRA
1
download
1
workflow-engine
1
workflow
1
strandedness-inference
1
strandedness
1
next-generation-sequencing
1
gene-model
1
computational-biology
1