Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "brain" keyword

brainart 1.0.9 💰
make images out of brain imaging data
12 versions - Latest release: almost 7 years ago - 2 dependent repositories - 67 downloads last month - 4 stars on GitHub - 1 maintainer
bcblib 0.3.4
32 versions - Latest release: over 1 year ago - 1 dependent repositories - 166 downloads last month - 2 stars on GitHub - 1 maintainer
pylabianca 0.2.0
Package for analysis of single-neuron spike data.
2 versions - Latest release: 5 months ago - 14 downloads last month - 3 stars on GitHub - 1 maintainer
freesurfer-stats 1.2.1
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 94 downloads last month - 12 stars on GitHub - 1 maintainer
deepparcellation 1.0.35
DeepParcellation: fast and accurate brain MRI parcellation by deep learning
36 versions - Latest release: over 2 years ago - 1 dependent repositories - 101 downloads last month - 3 stars on GitHub - 1 maintainer
deepneuroseg 0.4
Deep-learning Tool for White Matter (WM) lesions and Claustrum structure segmentation in brain ma...
4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 25 downloads last month - 5 stars on GitHub - 1 maintainer
pybraincompare 0.1.19 💰
meta analysis and comparison for neuroimaging in python
20 versions - Latest release: about 6 years ago - 4 dependent repositories - 35 downloads last month - 16 stars on GitHub - 1 maintainer
mediamaker 0.3.1
Media Maker Python SDK for Blue Brain BioExplorer
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 14 downloads last month - 62 stars on GitHub - 1 maintainer
bioexplorer 1.7.1
Python API for the Blue Brain BioExplorer
12 versions - Latest release: 6 months ago - 2 dependent repositories - 68 downloads last month - 62 stars on GitHub - 2 maintainers
brainatlas-api 0.0.2rc0
A lightweight python module to interact with atlases for systems neuroscience
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 34 downloads last month - 113 stars on GitHub - 3 maintainers
brayns 3.7.2
Brayns Python API
26 versions - Latest release: about 1 month ago - 1 dependent repositories - 115 downloads last month - 286 stars on GitHub - 1 maintainer
telluride-decoding 2.1.6
Telluride Decoding Toolbox
8 versions - Latest release: almost 2 years ago - 1 dependent repositories - 54 downloads last month - 10 stars on GitHub - 1 maintainer
ybc-funny 1.1.0
Get The Funny Text
12 versions - Latest release: about 5 years ago - 1 dependent repositories - 230 downloads last month - 1 maintainer
Top 1.0% on pypi.org
mne 1.7.0
MNE-Python project for MEG and EEG data analysis.
77 versions - Latest release: about 1 month ago - 149 dependent packages - 646 dependent repositories - 120 thousand downloads last month - 2,511 stars on GitHub - 3 maintainers
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.
32 versions - Latest release: about 1 month ago - 1 dependent repositories - 118 downloads last month - 16 stars on GitHub - 1 maintainer
pybids-reports 0.1.0
pybids-reports: report generator for BIDS datasets
1 version - Latest release: about 2 months ago - 12 downloads last month - 1 stars on GitHub - 1 maintainer
hsf 1.2.1
A simple yet exhaustive segmentation tool of the Hippocampal Subfields in T1w and T2w MRIs.
11 versions - Latest release: 2 months ago - 1 dependent repositories - 35 downloads last month - 6 stars on GitHub - 2 maintainers
pycrostates 0.5.0
A simple open source Python package for EEG microstate segmentation.
8 versions - Latest release: 4 months ago - 132 downloads last month - 33 stars on GitHub - 2 maintainers
brain-ai 0.1.5
Build your own intelligent personal assistant.
6 versions - Latest release: almost 6 years ago - 35 downloads last month - 2 stars on GitHub - 1 maintainer
keymorph 1.0.0
KeyMorph is a deep learning-based image registration framework that relies on automatically extra...
4 versions - Latest release: 23 days ago - 292 downloads last month - 46 stars on GitHub - 1 maintainer
ipytransferfunction 0.2.0
Transfer function editor for Blue Brain BioExplorer
1 version - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 2 stars on GitHub - 1 maintainer
mne-nirs 0.6.0
An MNE compatible package for processing near-infrared spectroscopy data.
16 versions - Latest release: 6 months ago - 1 dependent repositories - 324 downloads last month - 73 stars on GitHub - 2 maintainers
connectomemapper 3.1.0
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human...
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 84 downloads last month - 64 stars on GitHub - 1 maintainer
boss-ingest 0.12.0
Ingest client for the Boss
17 versions - Latest release: about 3 years ago - 1 dependent repositories - 124 downloads last month - 5 stars on GitHub - 2 maintainers
mne-lsl 1.3.1
Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compa...
6 versions - Latest release: about 2 months ago - 1 dependent package - 1.37 thousand downloads last month - 49 stars on GitHub - 3 maintainers
brainload 0.3.5 💰
Load FreeSurfer brain imaging data with minimal cognitive load.
8 versions - Latest release: over 4 years ago - 2 dependent repositories - 73 downloads last month - 9 stars on GitHub - 1 maintainer
avicortex 1.0.0
Python functions and classes to build connectivity graphs and datasets from Freesurfer's brain co...
14 versions - Latest release: 3 months ago - 50 downloads last month - 0 stars on GitHub - 1 maintainer
neurodamus 3.2.1
A BBP Simulation Control application for NEURON
5 versions - Latest release: about 1 month ago - 230 downloads last month - 8 stars on GitHub - 2 maintainers
Top 4.8% on pypi.org
brainspace 0.1.10
Cortical gradients and beyond
7 versions - Latest release: over 1 year ago - 8 dependent packages - 13 dependent repositories - 2.92 thousand downloads last month - 172 stars on GitHub - 2 maintainers
Top 9.8% on pypi.org
intern 1.4.1
Python SDK for interacting with neuroscience data via the Boss API.
24 versions - Latest release: about 1 year ago - 3 dependent packages - 11 dependent repositories - 323 downloads last month - 19 stars on GitHub - 2 maintainers
Top 5.6% on pypi.org
bg-atlasapi 1.0.3
A lightweight python module to interact with atlases for systems neuroscience
10 versions - Latest release: 4 months ago - 13 dependent packages - 4 dependent repositories - 2.07 thousand downloads last month - 113 stars on GitHub - 4 maintainers
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 3 months ago - 46 dependent packages - 204 dependent repositories - 25.1 thousand downloads last month - 651 stars on GitHub - 4 maintainers
pyrho 0.9.4
Fit and characterise rhodopsin photocurrents
1 version - Latest release: about 8 years ago - 1 dependent repositories - 25 downloads last month - 34 stars on GitHub - 1 maintainer
deepslice 1.1.7
A package to align histology to 3D brain atlases
17 versions - Latest release: 4 months ago - 789 downloads last month - 70 stars on GitHub - 1 maintainer
bluecellulab 2.6.12
Biologically detailed neural network simulations and analysis.
105 versions - Latest release: 25 days ago - 1 dependent package - 1 dependent repositories - 2.39 thousand downloads last month - 8 stars on GitHub - 1 maintainer
lib-dzne-analyze-seq-further 0.2.5
This package was created to contain all parts of the aBASE-like sequence read analysis that are s...
6 versions - Latest release: 4 months ago - 25 downloads last month - 1 stars on GitHub - 1 maintainer
dyconnmap 1.0.4
A dynamic connectome mapping module in Python
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 27 downloads last month - 96 stars on GitHub - 1 maintainer
fafbseg 3.0.7
Tools to work with the FlyWire and Google segmentations of the FAFB EM dataset
43 versions - Latest release: 17 days ago - 1 dependent package - 1 dependent repositories - 422 downloads last month - 12 stars on GitHub - 1 maintainer
nidmviewer 0.1.3 💰
command line or server tool to view or compare nidm results.
3 versions - Latest release: almost 8 years ago - 2 dependent repositories - 10 downloads last month - 3 stars on GitHub - 1 maintainer
stftsignal 0.1.0
A Python library for calculating Short-Time Fourier Transform
1 version - Latest release: 6 months ago - 17 downloads last month - 16 stars on GitHub - 1 maintainer
frequency-max-power 0.1.1
A Python library for calculating frequency_max_power
2 versions - Latest release: 6 months ago - 21 downloads last month - 16 stars on GitHub - 1 maintainer
neural-signal-analysis 0.2.8
A comprehensive Python library for human brain/ cortical organoid/spheroid eeg/ecog/mea data anal...
9 versions - Latest release: 6 months ago - 50 downloads last month - 16 stars on GitHub - 1 maintainer
transfer-entropy-regional 0.1.0
A Python library for calculating transfer_entropy_regional
1 version - Latest release: 6 months ago - 15 downloads last month - 16 stars on GitHub - 1 maintainer
phase-space-2d 0.1.0
A Python library for calculating and plotting phase space
1 version - Latest release: 6 months ago - 10 downloads last month - 16 stars on GitHub - 1 maintainer
phase-space-3d 0.1.0
A Python library for calculating and plotting phase space 3d
1 version - Latest release: 6 months ago - 13 downloads last month - 16 stars on GitHub - 1 maintainer
welchspsd 0.1.0
A Python library for calculating welchsPSD
1 version - Latest release: 6 months ago - 16 downloads last month - 16 stars on GitHub - 1 maintainer
transfer-entropy-hemispheric 0.1.0
A Python library for calculating transfer_entropy_hemispheric
1 version - Latest release: 6 months ago - 13 downloads last month - 16 stars on GitHub - 1 maintainer
transfer-entropy-all-signals 0.1.0
A Python library for calculating transfer_entropy_regional all signals
1 version - Latest release: 6 months ago - 13 downloads last month - 15 stars on GitHub - 1 maintainer
spectral-edge-density 0.1.1
A Python library for calculating spectral_edge_density
2 versions - Latest release: 6 months ago - 14 downloads last month - 15 stars on GitHub - 1 maintainer
spectral-centroids 0.1.1
A Python library for calculating spectral_centroids
2 versions - Latest release: 6 months ago - 20 downloads last month - 15 stars on GitHub - 1 maintainer
mfdfa1000hz 0.1.0
A Python library for calculating MFDFA for 1000hz
1 version - Latest release: 6 months ago - 10 downloads last month - 15 stars on GitHub - 1 maintainer
spectral-entropy-signals 0.1.0
A Python library for calculating spectral entropy
1 version - Latest release: 6 months ago - 9 downloads last month - 15 stars on GitHub - 1 maintainer
Top 6.9% on pypi.org
openmeeg 2.5.8
Forward problems solver in the field of EEG and MEG.
11 versions - Latest release: 2 months ago - 1 dependent package - 8 dependent repositories - 1.9 thousand downloads last month - 70 stars on GitHub - 2 maintainers
freesurfer-surface 2.0.0
Python Library to Read and Write Surface Files in Freesurfer's TriangularSurface Format
10 versions - Latest release: about 3 years ago - 3 dependent repositories - 59 downloads last month - 8 stars on GitHub - 1 maintainer
freesurfer-volume-reader 2.1.1
Python script & library to read hippocampal subfield volumescomputed by Freesurfer & ASHS
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 39 downloads last month - 4 stars on GitHub - 1 maintainer
celegans 0.0.1
CELEGANS Network Toolbox
1 version - Latest release: almost 7 years ago - 10 downloads last month - 1 maintainer
rbm 0.0.3
Rodent Brain Masking Tool with Keras 2D Unet
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 41 downloads last month - 1 maintainer
cortex2 1.0.1
Comprehensive threaded, asynchronous Python client for the Emotiv EEG Cortex 2 API
5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 39 downloads last month - 19 stars on GitHub - 1 maintainer
brainglobe-atlasapi 2.0.6
A lightweight python module to interact with and generate atlases for systems neuroscience.
7 versions - Latest release: 18 days ago - 8 dependent packages - 5.38 thousand downloads last month - 113 stars on GitHub - 3 maintainers
eegsynth 0.7.7
Converting real-time EEG into sounds, music and visual effects
28 versions - Latest release: 4 months ago - 1 dependent repositories - 181 downloads last month - 327 stars on GitHub - 1 maintainer
brainsimulator 0.5.4
Nuclear brain imaging synthesis with python
4 versions - Latest release: over 6 years ago - 32 downloads last month - 0 stars on GitHub - 1 maintainer
microtraining 0.1.0
Hans provides solutions. Always.
1 version - Latest release: over 1 year ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
xy-brain 3.0.0
Get The Brain Test
3 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 1 maintainer
Top 8.0% on pypi.org
tvb-framework 2.8.2
A package for performing whole brain simulations
23 versions - Latest release: 9 months ago - 2 dependent packages - 3 dependent repositories - 746 downloads last month - 99 stars on GitHub - 1 maintainer
tvb-bids-monitor 2.8.1
A helper package containing BIDS directory monitor module
5 versions - Latest release: about 1 year ago - 89 downloads last month - 99 stars on GitHub - 1 maintainer
neurokernel 0.3.1
An open architecture for Drosophila brain emulation
2 versions - Latest release: almost 2 years ago - 4 dependent repositories - 38 downloads last month - 544 stars on GitHub - 1 maintainer
tvb-storage 2.8.1
A package which handles the storage of TVB data
9 versions - Latest release: about 1 year ago - 2 dependent packages - 1 dependent repositories - 491 downloads last month - 99 stars on GitHub - 1 maintainer
tvb-rest-client 2.8.1
A helper package for preparing and sending requests towards the TVB REST API
21 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 352 downloads last month - 99 stars on GitHub - 1 maintainer
Top 4.5% on pypi.org
tvb-library 2.8.2
A package for performing whole brain simulations
31 versions - Latest release: 9 months ago - 7 dependent packages - 7 dependent repositories - 1.25 thousand downloads last month - 99 stars on GitHub - 1 maintainer
tvb-contrib 2.8.2
A package with TVB contributed additions to the simulator, useful for scripting.
15 versions - Latest release: 9 months ago - 1 dependent repositories - 228 downloads last month - 99 stars on GitHub - 1 maintainer
tvb 2.0.0
This namespace is only redirecting to tvb-library
5 versions - Latest release: about 1 year ago - 3 dependent repositories - 85 downloads last month - 99 stars on GitHub - 1 maintainer
surfdist 0.15.5
For calculating exact geodesic distances on cortical surface meshes
20 versions - Latest release: almost 4 years ago - 2 dependent repositories - 158 downloads last month - 45 stars on GitHub - 1 maintainer
ttoz 0.1.2 💰
Convert a whole brain T score map to a Z score map without loss of precision for strongly positiv...
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 28 downloads last month - 17 stars on GitHub - 1 maintainer
flybrains 0.2.10
Transforms to map between different Drosophila template brains
23 versions - Latest release: about 2 months ago - 3 dependent packages - 2 dependent repositories - 514 downloads last month - 5 stars on GitHub - 1 maintainer
neuroboros 0.1.7
Neuroimaging analysis in Python
9 versions - Latest release: 4 months ago - 1.4 thousand downloads last month - 3 stars on GitHub - 1 maintainer
brainreg 1.0.9
Automated multi-atlas whole-brain microscopy registration
45 versions - Latest release: 18 days ago - 6 dependent packages - 1 dependent repositories - 1.6 thousand downloads last month - 108 stars on GitHub - 2 maintainers
roiloc 0.3.0
A simple package to center and crop T1w & T2w MRIs around a given region of interest by its name.
13 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 139 downloads last month - 4 stars on GitHub - 2 maintainers
brainplotlib 1.0.0
A lightweight package to plot brain surfaces with Python.
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 91 downloads last month - 31 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
pybv 0.7.5
pybv -- A lightweight I/O utility for the BrainVision data format.
15 versions - Latest release: over 1 year ago - 5 dependent packages - 48 dependent repositories - 7.26 thousand downloads last month - 21 stars on GitHub - 3 maintainers
visbrain 0.4.5
Hardware-accelerated visualization suite for brain-data in Python
6 versions - Latest release: over 4 years ago - 6 dependent repositories - 206 downloads last month - 238 stars on GitHub - 1 maintainer
hmp 0.3.2
Package for fitting Hidden Multivariate pattern model to time-series
3 versions - Latest release: 4 months ago - 66 downloads last month - 30 stars on GitHub - 1 maintainer
deepsurfer 0.1.1a4
Learning-Based Utilities for Neuroimage Analysis
6 versions - Latest release: 3 months ago - 381 downloads last month - 2 maintainers
borsar 0.1
tools for electrophysiological analysis, especially cluster-based tests.
1 version - Latest release: 7 months ago - 1 dependent package - 27 downloads last month - 8 stars on GitHub - 1 maintainer
cvasl 0.0.2
A package for analysis of MRI
2 versions - Latest release: 6 months ago - 11 downloads last month - 4 stars on GitHub - 1 maintainer
hyperalignment 0.1.1
Hyperalignment algorithms for functional alignment of fMRI data.
1 version - Latest release: about 1 year ago - 69 downloads last month - 1 maintainer
pydra-templateflow 0.0.2
Pydra tasks for TemplateFlow
2 versions - Latest release: about 1 year ago - 23 downloads last month - 1 stars on GitHub - 1 maintainer
neuroruler 1.0.1
A program that calculates head circumference from MRI data (.nii, .nii.gz, .nrrd).
10 versions - Latest release: about 1 year ago - 94 downloads last month - 8 stars on GitHub - 1 maintainer
mecons 0.0.3
MeCons project for measuring consciousness.
1 version - Latest release: over 1 year ago - 5 downloads last month - 0 stars on GitHub - 1 maintainer
surface-spaces 0.1.0
Convenient conversion between surface spaces.
1 version - Latest release: almost 2 years ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
nidatasets 0.1.0
Convenient access to preprocessed brain imaging data.
2 versions - Latest release: almost 2 years ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
searchlights 0.2.0
A collection of pre-computed searchlights.
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 1 maintainer
zametki 0.1.0
A python package for writing logs
1 version - Latest release: about 7 years ago - 1 dependent repositories - 13 downloads last month - 1 maintainer
Top 7.3% on pypi.org
tvb-data 1.5.8
A package with data for TVB
4 versions - Latest release: almost 5 years ago - 4 dependent packages - 5 dependent repositories - 640 downloads last month - 12 stars on GitHub - 1 maintainer
subbrainsegment 0.1.0
Package for subcortical brain segmentation
13 versions - Latest release: almost 3 years ago - 1 dependent repositories - 100 downloads last month - 1 maintainer
rbm3 0.0.5
Rodent Brain Masking Tool with Keras 3D Unet
1 version - Latest release: over 2 years ago - 1 dependent repositories - 16 downloads last month - 1 maintainer
pyrastitcher 0.0.1
Provides a Python interface to the Terastitcher program.
1 version - Latest release: about 8 years ago - 2 dependent repositories - 10 downloads last month - 1 stars on GitHub - 1 maintainer
ocpy 0.5.3
Deprecated. Use ndio instead.
10 versions - Latest release: over 8 years ago - 2 dependent repositories - 36 downloads last month - 1 maintainer
neuron_ui 0.0.1
User interface for NEURON based on web technologies and Jupyter
2 versions - Latest release: about 7 years ago - 16 downloads last month - 16 stars on GitHub - 1 maintainer
Top 3.9% on pypi.org
neurite 0.2
Neural Networks Toolbox for Medical Imaging
2 versions - Latest release: almost 2 years ago - 1 dependent package - 17 dependent repositories - 7.02 thousand downloads last month - 317 stars on GitHub - 1 maintainer
ndio 1.1.6
A Python library for open neuroscience data access and manipulation.
53 versions - Latest release: over 7 years ago - 3 dependent repositories - 186 downloads last month - 18 stars on GitHub - 1 maintainer
Related Keywords
neuroscience 59 neuroimaging 36 python 36 eeg 25 bci 15 computational-neuroscience 15 brain-computer-interface 13 biohybrid-computing 13 biohybrid 13 chaos 13 chaos-theory 13 dynamical-systems 13 tes 13 simulation 11 EEG 10 mri 10 microscopy 10 registration 9 fmri 9 connectome 9 tvb 8 surface 7 MRI 7 simulator 7 neuroscience-m 7 MEG 7 cortex 7 human 6 neuron 6 connectomics 6 animal 6 meg 6 models 6 dynamics 6 freesurfer 6 neuronal 6 delay 6 segmentation 6 visualization 5 EM 5 deep-learning 5 machine-learning 5 visualisation 5 atlases 5 bbp 4 spatial 4 neuro 4 calcium 4 real-time 3 connectivity 3 boss 3 database 3 electroencephalography 3 electron 3 client 3 neural-network 3 ecog 3 data 3 python3 3 template 3 ECoG 3 art 3 parcellation 3 reader 3 statistics 3 imaging 3 covid 3 covid19 3 coronavirus 3 blue 3 virus 3 molecule 3 molecular system 3 atlas 3 dti 3 network 3 analysis 3 raytracing 3 mesh 3 mni 2 brainweb 2 automation 2 self-supervised-learning 2 neuroanatomy 2 fMRI 2 plot 2 morphometry 2 medical-imaging 2 neurodata 2 neurodata.io 2 ocpy 2 ocp 2 ocp.me 2 LSL 2 microns 2 navis 2 graphs 2 api 2 pytorch 2 mvpa 2