Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "neuroimaging" keyword

fids 0.1.0
fake bids dataset generator
1 version - Latest release: about 1 month ago - 383 downloads last month - 1,098 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
bids-validator 1.14.6
Validator for the Brain Imaging Data Structure
84 versions - Latest release: about 1 month ago - 7 dependent packages - 87 dependent repositories - 30 thousand downloads last month - 177 stars on GitHub - 4 maintainers
compose-runner 0.4.6
A package for running neurosynth-compose analyses
17 versions - Latest release: 4 months ago - 175 downloads last month - 0 stars on GitHub - 1 maintainer
mrqa 0.2.4
rQA suite of tools offering automatic evaluation of protocol compliance
10 versions - Latest release: about 1 year ago - 50 downloads last month - 9 stars on GitHub - 1 maintainer
mne-ari 0.1.2
All-Resolutions Inference for M/EEG
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 13 downloads last month - 15 stars on GitHub - 1 maintainer
hmp 0.3.2
Package for fitting Hidden Multivariate pattern model to time-series
3 versions - Latest release: 4 months ago - 64 downloads last month - 30 stars on GitHub - 1 maintainer
pylabber 0.1.0
A Django app to manage neuroscience research
6 versions - Latest release: almost 4 years ago - 1 dependent repositories - 26 downloads last month - 6 stars on GitHub - 1 maintainer
hedtools 0.4.0
HED validation, summary, and analysis tools.
5 versions - Latest release: 8 months ago - 3 dependent repositories - 45 downloads last month - 8 stars on GitHub - 3 maintainers
Top 9.3% on pypi.org
clinica 0.8.1
Software platform for clinical neuroimaging studies
38 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 617 downloads last month - 216 stars on GitHub - 4 maintainers
pystorm3 0.1.8
Python implementation of some Brainstorm functions
9 versions - Latest release: about 1 month ago - 70 downloads last month - 1 stars on GitHub - 1 maintainer
padre 2.5.5
participant data repository
21 versions - Latest release: over 8 years ago - 2 dependent repositories - 41 downloads last month - 1 stars on GitHub - 1 maintainer
pilab-binama 0.0.8
Functions to modify binary masks
8 versions - Latest release: about 1 year ago - 26 downloads last month - 1 stars on GitHub - 1 maintainer
gema-utils 0.0.1
A python suite to complement CLARA (NVIDIA's healthcare application)
1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 1 maintainer
nimagen 0.0.3
Simple statistical and visualisation tool for neuroimaging genetics studies
3 versions - Latest release: about 1 year ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
hyperalignment 0.1.1
Hyperalignment algorithms for functional alignment of fMRI data.
1 version - Latest release: about 1 year ago - 464 downloads last month - 1 maintainer
fsl-sub-plugin-sge 1.5.5
FSL Cluster Submission Plugin for Son of/Univa Grid Engine
2 versions - Latest release: 3 months ago - 44 downloads last month - 1 maintainer
Top 5.0% on pypi.org
fitz 0.0.1.dev1
Fitz: Workflow Mangement for neuroimaging data.
3 versions - Latest release: 10 months ago - 60 dependent packages - 934 dependent repositories - 131 thousand downloads last month - 13 stars on GitHub - 1 maintainer
mnisiscom 0.4.0
A simple command line tool and GUI for computing subtraction ictal SPECT coregistered to MRI (SIS...
1 version - Latest release: over 4 years ago - 1 dependent repositories - 5 downloads last month - 3 stars on GitHub - 1 maintainer
Top 1.0% on pypi.org
mne 1.7.0
MNE-Python project for MEG and EEG data analysis.
77 versions - Latest release: about 2 months ago - 149 dependent packages - 646 dependent repositories - 120 thousand downloads last month - 2,511 stars on GitHub - 3 maintainers
itk-skullstripping 0.1.0
Automatic skull-stripping for neuroimage analysis
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 93 downloads last month - 11 stars on GitHub - 2 maintainers
niutils 0.7.0
Various utilities to fast-track some boring python coding.
13 versions - Latest release: about 1 month ago - 1 dependent repositories - 56 downloads last month - 1 stars on GitHub - 1 maintainer
mediamaker 0.3.1
Media Maker Python SDK for Blue Brain BioExplorer
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 11 downloads last month - 62 stars on GitHub - 1 maintainer
bioexplorer 1.7.1
Python API for the Blue Brain BioExplorer
12 versions - Latest release: 6 months ago - 2 dependent repositories - 68 downloads last month - 62 stars on GitHub - 2 maintainers
neurocaps 0.9.0
Co-activation Patterns (CAPs) Python package
30 versions - Latest release: 27 days ago - 1.66 thousand downloads last month - 0 stars on GitHub - 1 maintainer
brainlit 0.3.6
Code to process and analyze brainlit data
11 versions - Latest release: about 1 year ago - 1 dependent repositories - 64 downloads last month - 24 stars on GitHub - 2 maintainers
nidatasets 0.1.0
Convenient access to preprocessed brain imaging data.
2 versions - Latest release: almost 2 years ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
bxl 0.3.4
Basic library for interacting with the REST interface of XNAT.
10 versions - Latest release: almost 5 years ago - 75 downloads last month - 1 maintainer
Top 4.6% on pypi.org
fmriprep 23.2.2
A robust and easy-to-use pipeline for preprocessing of diverse fMRI data
182 versions - Latest release: about 1 month ago - 11 dependent repositories - 1.9 thousand downloads last month - 609 stars on GitHub - 5 maintainers
Top 5.3% on pypi.org
fmriprep-docker 23.2.2
A wrapper for generating Docker commands using regular fMRIPrep syntax
168 versions - Latest release: about 1 month ago - 1 dependent package - 9 dependent repositories - 1.26 thousand downloads last month - 609 stars on GitHub - 5 maintainers
Top 8.7% on pypi.org
bidscoin 4.3.2
Converts and organises raw MRI data-sets according to the Brain Imaging Data Structure (BIDS)
34 versions - Latest release: 2 months ago - 2 dependent repositories - 484 downloads last month - 117 stars on GitHub - 1 maintainer
fmristats 0.1.1
Modelling the data and not the images in FMRI
8 versions - Latest release: about 5 years ago - 1 dependent repositories - 34 downloads last month - 1 maintainer
neural-fmri 1.2.5
Neuroimaging Analysis Library
31 versions - Latest release: over 7 years ago - 3 dependent repositories - 81 downloads last month - 2 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
fsleyes 1.12.0
FSLeyes, the FSL image viewer
116 versions - Latest release: about 1 month ago - 1 dependent package - 4 dependent repositories - 907 downloads last month - 814 stars on GitHub - 1 maintainer
surface-spaces 0.1.0
Convenient conversion between surface spaces.
1 version - Latest release: almost 2 years ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
rust-dtw 0.1.14
A rust implementation of dynamic time warping with python bindings!
4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 88 downloads last month - 21 stars on GitHub - 1 maintainer
hiwenet 0.4.5
Histogram-weighted Networks for Feature Extraction and Advance Analysis in Neuroscience
7 versions - Latest release: almost 2 years ago - 1 dependent package - 1 dependent repositories - 32 downloads last month - 9 stars on GitHub - 1 maintainer
dcdf 0.1.8
Package to compute DCDF for nifti formatted MRI data.
9 versions - Latest release: about 3 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 1 maintainer
pydra-templateflow 0.0.2
Pydra tasks for TemplateFlow
2 versions - Latest release: about 1 year ago - 18 downloads last month - 1 stars on GitHub - 1 maintainer
dstrf 0.2
MEG/EEG source localization tool
2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 14 downloads last month - 1 stars on GitHub - 1 maintainer
roicat 1.1.38
A library for classifying and tracking ROIs.
37 versions - Latest release: about 2 months ago - 2 dependent repositories - 129 downloads last month - 9 stars on GitHub - 2 maintainers
fsl-sub 2.8.3
FSL Cluster Submission Script
3 versions - Latest release: about 1 year ago - 3 dependent packages - 94 downloads last month - 1 maintainer
mne-lsl 1.3.1
Real-time framework integrated with MNE-Python for online neuroscience research through LSL-compa...
7 versions - Latest release: 2 months ago - 1 dependent package - 1.19 thousand downloads last month - 49 stars on GitHub - 3 maintainers
artbrain 1.0.1 💰
embed images into brain imaging data
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
bidskit 2024.5.3 💰
BIDS curation toolkit
29 versions - Latest release: about 1 month ago - 1 dependent repositories - 224 downloads last month - 59 stars on GitHub - 1 maintainer
memori 0.3.6
A python library for creating memoized data and code for neuroimaging pipelines
19 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 91 downloads last month - 0 stars on GitHub - 1 maintainer
borsar 0.1
tools for electrophysiological analysis, especially cluster-based tests.
1 version - Latest release: 7 months ago - 1 dependent package - 19 downloads last month - 8 stars on GitHub - 1 maintainer
pybicpl 0.5.1
Python interface for basic MNI .obj file format. Supports read, write, and calculations on a vert...
10 versions - Latest release: over 1 year ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
nltools 0.5.1
A Python package to analyze neuroimaging data
41 versions - Latest release: 2 months ago - 2 dependent packages - 13 dependent repositories - 3.02 thousand downloads last month - 120 stars on GitHub - 2 maintainers
mapbrain 0.9.3
Brain image feature extraction and visualization
1 version - Latest release: almost 6 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
nibabies 23.1.0
Processing workflows for magnetic resonance images of the brain in infants
25 versions - Latest release: 7 months ago - 1 dependent repositories - 97 downloads last month - 19 stars on GitHub - 3 maintainers
nibabies-wrapper 99.99.99
A wrapper for generating Docker and Apptainer/Singularity commands for simpler NiBabies usage
26 versions - Latest release: over 2 years ago - 1 dependent repositories - 58 downloads last month - 19 stars on GitHub - 2 maintainers
neurocombat-sklearn 0.1.3
Harmonizing neuroimaging data across sites. Implementation of neurocombat using sklearn format
6 versions - Latest release: over 4 years ago - 1 dependent package - 1 dependent repositories - 112 downloads last month - 20 stars on GitHub - 1 maintainer
neuropower 0.2.8
A package to perform power analyses for neuroimaging data
9 versions - Latest release: over 7 years ago - 3 dependent repositories - 29 downloads last month - 12 stars on GitHub - 2 maintainers
Top 6.6% on pypi.org
netneurotools 0.2.4
A toolbox for network neuroscience
6 versions - Latest release: 4 months ago - 6 dependent packages - 10 dependent repositories - 679 downloads last month - 56 stars on GitHub - 4 maintainers
netneurotools-scipyfix 0.0.0
Commonly used tools in the Network Neuroscience Lab
1 version - Latest release: 6 months ago - 10 downloads last month - 56 stars on GitHub - 1 maintainer
pybasc 0.6.1
Bootstrap Analysis for Stable Clustering in Python
5 versions - Latest release: almost 5 years ago - 1 dependent repositories - 137 downloads last month - 24 stars on GitHub - 1 maintainer
pubget 0.0.8
Download neuroimaging articles and extract text and stereotactic coordinates.
6 versions - Latest release: 11 months ago - 53 downloads last month - 13 stars on GitHub - 1 maintainer
conpagnon 2.0.11
Easy Resting State Analysis with Python
11 versions - Latest release: about 4 years ago - 42 downloads last month - 3 stars on GitHub - 1 maintainer
vqt 0.1.3
Variable Q-Transform with PyTorch backend
4 versions - Latest release: 2 months ago - 66 downloads last month - 0 stars on GitHub - 1 maintainer
deepsurfer 0.1.1a4
Learning-Based Utilities for Neuroimage Analysis
6 versions - Latest release: 3 months ago - 294 downloads last month - 2 maintainers
cbicqc 2021.7.8 💰
MRI phantom quality control tool
4 versions - Latest release: almost 3 years ago - 72 downloads last month - 0 stars on GitHub - 1 maintainer
pycivet 0.1.2
Object-oriented CIVET bindings for Python
22 versions - Latest release: over 1 year ago - 1 dependent repositories - 78 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
mne-bids 0.11.1
MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating...
17 versions - Latest release: over 1 year ago - 11 dependent packages - 50 dependent repositories - 16.4 thousand downloads last month - 123 stars on GitHub - 3 maintainers
nigsp 0.19.0
A python library (and toolbox!) to run Graph Signal Processing on multimodal MRI data.
32 versions - Latest release: about 2 months ago - 1 dependent repositories - 112 downloads last month - 16 stars on GitHub - 1 maintainer
pycrostates 0.5.0
A simple open source Python package for EEG microstate segmentation.
8 versions - Latest release: 4 months ago - 132 downloads last month - 33 stars on GitHub - 2 maintainers
pydra-bids 0.0.10
Pydra tasks for BIDS I/O
10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 405 downloads last month - 2 stars on GitHub - 2 maintainers
mne-nirs 0.6.0
An MNE compatible package for processing near-infrared spectroscopy data.
16 versions - Latest release: 7 months ago - 1 dependent repositories - 299 downloads last month - 73 stars on GitHub - 2 maintainers
cmb 0.0.7
Cere-MEG-Bellum (CMB) - Cerbellum segmentation and forward solution calculation
7 versions - Latest release: about 2 years ago - 85 downloads last month - 1 maintainer
pydemotest 0.1.2
TestDemo-Python project for uploading to pypi.
4 versions - Latest release: 10 months ago - 15 downloads last month - 1 maintainer
photonai-neuro 0.2.0
Add-on module to simplify machine learning analyses for multimodal Magnetic Resonance Imaging (MR...
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 7 stars on GitHub - 3 maintainers
Top 6.9% on pypi.org
openmeeg 2.5.8
Forward problems solver in the field of EEG and MEG.
12 versions - Latest release: 2 months ago - 1 dependent package - 8 dependent repositories - 1.9 thousand downloads last month - 70 stars on GitHub - 2 maintainers
fmri_delay 0.1.4
Tool for measuring delay between sparse transitions in fmri BOLD signals
6 versions - Latest release: almost 4 years ago - 27 downloads last month - 1 maintainer
Top 0.5% on pypi.org
nibabel 5.2.1
Access a multitude of neuroimaging data formats
42 versions - Latest release: 3 months ago - 390 dependent packages - 3,394 dependent repositories - 476 thousand downloads last month - 604 stars on GitHub - 2 maintainers
junifer 0.0.4
JUelich NeuroImaging FEature extractoR
170 versions - Latest release: 2 months ago - 1.81 thousand downloads last month - 11 stars on GitHub - 2 maintainers
Top 0.7% on pypi.org
nipype 1.8.6
Neuroimaging in Python: Pipelines and Interfaces
64 versions - Latest release: about 1 year ago - 45 dependent packages - 1,107 dependent repositories - 162 thousand downloads last month - 735 stars on GitHub - 4 maintainers
frat-brain 1.6.5
Application for ROI fMRI data analysis.
37 versions - Latest release: about 1 month ago - 162 downloads last month - 11 stars on GitHub - 1 maintainer
nppy 0.2.1
Neural Pre-Processing: A Learning Framework for End-to-end Brain MRI Pre-processing.
4 versions - Latest release: 8 months ago - 12 downloads last month - 17 stars on GitHub - 1 maintainer
clinica-pydra-fsl 0.1.0
Pydra tasks for FSL designed for Clinica
1 version - Latest release: about 1 month ago - 39 downloads last month - 3 stars on GitHub - 3 maintainers
pyhaze 0.1.3 💰
Fast smoothing of per-vertex data on triangular meshes.
4 versions - Latest release: over 1 year ago - 25 downloads last month - 1 stars on GitHub - 1 maintainer
Top 1.4% on pypi.org
dipy 1.9.0
Diffusion MRI Imaging in Python
27 versions - Latest release: 3 months ago - 46 dependent packages - 204 dependent repositories - 24.6 thousand downloads last month - 651 stars on GitHub - 4 maintainers
brainview 0.0.1 💰
Visualize morphometry neuroimaging data on 3D brain meshes.
1 version - Latest release: over 5 years ago - 1 dependent repositories - 18 downloads last month - 4 stars on GitHub - 1 maintainer
bids2table 0.1.0
Efficiently index large-scale BIDS datasets and derivatives
3 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 1.33 thousand downloads last month - 11 stars on GitHub - 1 maintainer
tfce-mediation 1.5.3
TFCE_mediation
37 versions - Latest release: over 5 years ago - 1 dependent repositories - 562 downloads last month - 29 stars on GitHub - 2 maintainers
omnineuro 2023.2.1
omni is a Python/C++17 library for image preprocessing in neuroimaging
8 versions - Latest release: over 1 year ago - 78 downloads last month - 4 stars on GitLab.com - 1 maintainer
brainweb 1.6.2 💰
BrainWeb-based multimodal models of 20 normal brains
18 versions - Latest release: over 3 years ago - 1 dependent package - 3 dependent repositories - 322 downloads last month - 27 stars on GitHub - 1 maintainer
phys2cvr 0.18.3
Python library to generate regressors for and compute Cerebrovascular Reactivity and lag maps.
47 versions - Latest release: 9 months ago - 1 dependent repositories - 636 downloads last month - 4 stars on GitHub - 1 maintainer
easylearn 0.1.20a0
This project is designed for machine learning in resting-state fMRI field
17 versions - Latest release: almost 4 years ago - 1 dependent repositories - 61 downloads last month - 34 stars on GitHub - 1 maintainer
brainart 1.0.9 💰
make images out of brain imaging data
12 versions - Latest release: almost 7 years ago - 2 dependent repositories - 67 downloads last month - 4 stars on GitHub - 1 maintainer
django-mri 0.0.4
A reusable Django app to manage MRI data.
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 25 downloads last month - 7 stars on GitHub - 1 maintainer
bcblib 0.3.4
32 versions - Latest release: over 1 year ago - 1 dependent repositories - 166 downloads last month - 2 stars on GitHub - 1 maintainer
d2b 1.4.2
Organize data in the BIDS format
21 versions - Latest release: almost 2 years ago - 6 dependent repositories - 61 downloads last month - 0 stars on GitHub - 1 maintainer
pathmatcher 1.8.1
Regular Expression Path Matcher - Easily batch manipulate folders and files trees with regular ex...
6 versions - Latest release: about 1 year ago - 1 dependent repositories - 20 downloads last month - 4 stars on GitHub - 1 maintainer
actflowtoolbox 0.3.0 removed
The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivit...
1 version - Latest release: 8 months ago - 28 stars on GitHub - 1 maintainer
actflow 0.3.4
The Brain Activity Flow (Actflow) Toolbox. Tools to quantify the relationship between connectivit...
7 versions - Latest release: 7 months ago - 1 dependent repositories - 78 downloads last month - 33 stars on GitHub - 3 maintainers
pyradigm 0.6.5
Python-based data structure to improve handling of datasets in machine learning workflows
12 versions - Latest release: about 1 year ago - 2 dependent packages - 5 dependent repositories - 94 downloads last month - 26 stars on GitHub - 1 maintainer
cubids-bond-fork 0.1.0
BIDS On Disk Editor
1 version - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 94 downloads last month - 18 stars on GitHub - 1 maintainer
freesurfer-stats 1.2.1
Python Library to Read FreeSurfer's cortical parcellation anatomical statistics
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 94 downloads last month - 12 stars on GitHub - 1 maintainer
bjdata 0.4.1
Binary JData and UBJSON encoder/decoder
11 versions - Latest release: 8 months ago - 1 dependent repositories - 99 downloads last month - 1 stars on GitHub - 1 maintainer
neurograph 3.0.0
12 versions - Latest release: 3 months ago - 31 downloads last month - 1 maintainer
Top 9.6% on pypi.org
bdpy 0.21.1
Brain decoder toolbox for Python
18 versions - Latest release: 6 months ago - 4 dependent repositories - 204 downloads last month - 31 stars on GitHub - 1 maintainer
Related Keywords
neuroscience 74 python 68 fmri 39 mri 37 brain 36 bids 28 machine-learning 21 nifti 20 brain-imaging 17 eeg 16 fsl 12 statistics 12 dicom 11 meg 11 freesurfer 10 machine learning 10 MRI 10 medical-imaging 9 MEG 9 EEG 9 pydra 9 electroencephalography 9 mri-images 9 surface 8 bids-format 7 python3 7 deep-learning 7 visualization 7 magnetoencephalography 7 research 7 dcm2niix 7 nii 7 deep learning 6 hacktoberfest 6 cortex 6 nilearn 6 meta-analysis 6 quality-control 6 dcm 6 jpeg-image 5 brainweb 5 jpeg 5 fMRI 5 gz 5 dti 5 nitrc 5 registration 5 dicom-images 5 BIDS 5 electrocorticography 5 image-processing 5 mricrogl 5 pet 5 nifti-format 5 workflows 4 neuroinformatics 4 learning 4 Neuroimaging 4 tool 4 cli 4 segmentation 4 fmri-preprocessing 4 imaging 4 nipype 4 nibabel 4 analysis 4 preprocessing 4 brain-connectivity 4 scikit-learn 4 ants 4 pytorch 4 plugin 4 d2b 4 nipy 3 deeplearning 3 data-standards 3 voxel 3 vertex 3 normalization 3 repository 3 fmri-data-analysis 3 harmonization 3 combat 3 mri-brain 3 mesh 3 tractography 3 science 3 snakemake 3 diffusion-mri 3 ECoG 3 brain-extraction 3 afni 3 skull-stripping 3 FSL 3 cluster 3 grid 3 slurm 3 DICOM 3 parcellation 3 data 3