Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "cheminformatics" keyword

Top 6.2% on pypi.org
stk 2024.3.28.0 💰
A Python library which allows construction and manipulation of complex molecules, as well as auto...
114 versions - Latest release: 2 months ago - 8 dependent packages - 5 dependent repositories - 1.36 thousand downloads last month - 237 stars on GitHub - 2 maintainers
cheminftools 0.1.4
A collection of tools for daily cheminformatics tasks.
5 versions - Latest release: 12 months ago - 26 downloads last month - 4 stars on GitHub - 1 maintainer
moldoc 3.0.0 💰
Make better chemistry documentation.
9 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 71 downloads last month - 12 stars on GitHub - 1 maintainer
microberx 0.2.6
MicrobeRX is A tool for enzymatic reaction-based metabolite prediction in the gut microbiome.
10 versions - Latest release: 4 months ago - 20 downloads last month - 7 stars on GitHub - 1 maintainer
mocca 0.1.2
MOCCA (Multivariate Online Contextual Chromatographic Analysis) is an open-source Python project ...
1 version - Latest release: almost 2 years ago - 17 downloads last month - 32 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
thermo 0.2.27
Chemical properties component of Chemical Engineering Design Library (ChEDL)
59 versions - Latest release: 9 months ago - 11 dependent packages - 16 dependent repositories - 13.2 thousand downloads last month - 527 stars on GitHub - 1 maintainer
nistchempy 0.2.3
A simple Python wrapper around the NIST Chemistry WebBook
4 versions - Latest release: about 2 years ago - 1 dependent repositories - 90 downloads last month - 18 stars on GitHub - 1 maintainer
rdmc 0.1.1
A light-weight software package with expertise in handling Reaction Data and Molecular (including...
2 versions - Latest release: 7 months ago - 15 downloads last month - 20 stars on GitHub - 1 maintainer
pybatchclassyfire 0.1.6
A python client for batch queries of the ClassyFire API
7 versions - Latest release: about 4 years ago - 2 dependent repositories - 46 downloads last month - 7 stars on GitHub - 1 maintainer
panel-chemistry 0.2.2
This project makes it super simple to do exploratory data analysis and develop high-quality Panel...
13 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 1.14 thousand downloads last month - 115 stars on GitHub - 1 maintainer
rdfreader 1.0.2
Read the full contents of CTAB .rdf files in python. Captures RXN and MOL record using RDKit and ...
5 versions - Latest release: 10 months ago - 16 downloads last month - 3 stars on GitHub - 1 maintainer
csm 1.3.1 💰
The Continuous Symmetry Measure
2 versions - Latest release: almost 2 years ago - 63 downloads last month - 1,002 stars on GitHub - 4 maintainers
Top 7.5% on pypi.org
cirpy 1.0.2
Python wrapper for the NCI Chemical Identifier Resolver (CIR).
2 versions - Latest release: over 8 years ago - 8 dependent repositories - 781 downloads last month - 109 stars on GitHub - 1 maintainer
smasher 1.0
Smash molecule and obtain significant fragments
1 version - Latest release: about 3 years ago - 1 dependent repositories - 11 downloads last month - 16 stars on GitHub - 1 maintainer
chemfiles 0.10.4
Read and write computational chemistry files
9 versions - Latest release: about 1 year ago - 3 dependent packages - 3 dependent repositories - 1.32 thousand downloads last month - 3 stars on GitHub - 1 maintainer
global-chem-extensions 1.0.3 💰
Extensions for functionality for global chem
138 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 841 downloads last month - 2 stars on GitHub - 1 maintainer
qsprpred 3.0.2
A cheminformatics package for training and testing QSAR/QSPR models
1 version - Latest release: 2 months ago - 45 downloads last month - 32 stars on GitHub - 1 maintainer
kotori-smash 1.0
Smash molecule and obtain significant fragments
1 version - Latest release: about 3 years ago - 1 dependent repositories - 7 downloads last month - 16 stars on GitHub - 1 maintainer
biolookup 0.2.0
Get metadata and ontological information about all biomedical entities.
4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 32 downloads last month - 3 stars on GitHub - 1 maintainer
chemmltoolkit 0.1.1.dev9
Useful functionality for machine learning in chemistry
90 versions - Latest release: over 2 years ago - 1 dependent repositories - 398 downloads last month - 2 stars on GitHub - 1 maintainer
bcinfo 0.0.3
A python project for accummulation of my works before.
3 versions - Latest release: over 5 years ago - 1 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
bofire 0.0.12
Experimental design and (multi-objective) bayesian optimization.
12 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 269 downloads last month - 107 stars on GitHub - 4 maintainers
biobuild 3.10.11
A fragment-based molecular assembly toolkit for python.
1 version - Latest release: 9 months ago - 1 dependent package - 40 downloads last month - 1 stars on GitHub - 1 maintainer
massivechem 3.2
MASSIVEChem is a pip-installable package for analytical chemistry. It simulates molecule mass spe...
18 versions - Latest release: 17 days ago - 1.31 thousand downloads last month - 8 stars on GitHub - 2 maintainers
Top 9.6% on pypi.org
chemplot 1.2.1
A python library for chemical space visualization.
9 versions - Latest release: over 1 year ago - 2 dependent repositories - 429 downloads last month - 99 stars on GitHub - 1 maintainer
moldrug 3.7.2
MolDrug (from Molecule to Drug) is a python package for drug-oriented optimization on the chemica...
34 versions - Latest release: 4 months ago - 1 dependent repositories - 88 downloads last month - 10 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
pysmiles 1.1.2
A lightweight SMILES reader and writer
5 versions - Latest release: 9 months ago - 3 dependent packages - 17 dependent repositories - 2.84 thousand downloads last month - 138 stars on GitHub - 1 maintainer
biocatalyzer 0.1.1b0
BioCatalyzer: a rule-based tool to predict compound metabolism
9 versions - Latest release: over 1 year ago - 20 downloads last month - 4 stars on GitHub - 1 maintainer
candiy-lemon 0.3.0
Mine data from the PDB in minutes
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 37 downloads last month - 51 stars on GitHub - 1 maintainer
mxfp 1.1.2
MXFP
4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 20 downloads last month - 1 maintainer
chemdataextractor-ide 1.3.2
A toolkit for extracting chemical information from the scientific literature.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 2 maintainers
metadisassembler 0.1.0
The Metabolic Disassembler
9 versions - Latest release: over 4 years ago - 1 dependent repositories - 49 downloads last month - 3 stars on GitHub - 2 maintainers
scaffoldgraph 1.1.2
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX for gener...
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 183 downloads last month - 158 stars on GitHub - 1 maintainer
smilescombine 0.1.0
Combinatorially combine molecular skeletons and substituents.
2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 7 stars on GitHub - 1 maintainer
molml 0.9.0
An interface between molecules and machine learning
12 versions - Latest release: about 5 years ago - 1 dependent repositories - 71 downloads last month - 65 stars on GitHub - 1 maintainer
ani1datatools 0.0.3
package used to access the ANI-1 data set
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 37 downloads last month - 93 stars on GitHub - 1 maintainer
qsarify 0.1.1
QSARify: A tool for QSAR model development
2 versions - Latest release: 7 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
rai-chem 0.0.4
2 versions - Latest release: 6 months ago - 29 downloads last month - 1 stars on GitHub - 1 maintainer
scaffoldgraphnew 1.1.5
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX for gener...
4 versions - Latest release: over 1 year ago - 16 downloads last month - 158 stars on GitHub - 1 maintainer
pubchemprops 0.1.1
This is a simple wrapper for PubChem PUG REST API that helps to get various information from PubChem
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 16 downloads last month - 20 stars on GitHub - 1 maintainer
smilez 1.0
A compressor and decompressor library for cheminformatics SMILES strings
1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
deepmol 1.1.2
DeepMol: a python-based machine and deep learning framework for drug discovery
19 versions - Latest release: 3 months ago - 223 downloads last month - 83 stars on GitHub - 2 maintainers
fermo-core
Data processing/analysis functionality of metabolomics dashboard FERMO
3 versions - 222 downloads last month - 1 stars on GitHub - 1 maintainer
scaffoldgraphdg 1.1.8
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX for gener...
7 versions - Latest release: over 1 year ago - 58 downloads last month - 158 stars on GitHub - 1 maintainer
mmpdb 2.1
A package to identify matched molecular pairs and use them to predict property changes
1 version - Latest release: about 6 years ago - 1 dependent repositories - 710 downloads last month - 186 stars on GitHub - 1 maintainer
exmoset 0.1.0
Automating the generation of human readable descriptions of arbitrary subsets of molecular space.
2 versions - Latest release: about 3 years ago - 1 dependent repositories - 7 downloads last month - 4 stars on GitHub - 1 maintainer
route-distances 1.2.0
Models for calculating distances between synthesis routes
3 versions - Latest release: 4 months ago - 1 dependent package - 2 dependent repositories - 684 downloads last month - 19 stars on GitHub - 2 maintainers
molecular3dlengthdescriptors 1.1.0
A 3D conformational based molecular descriptor set.
4 versions - Latest release: about 3 years ago - 1 dependent repositories - 12 downloads last month - 5 stars on GitHub - 1 maintainer
atomlite 4.4.2 💰
A SQLite chemical database.
24 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 655 downloads last month - 12 stars on GitHub - 1 maintainer
pdbe-arpeggio 1.4.4
Arpeggio calculates interatomic contacts based on the rules defined in CREDO.
2 versions - Latest release: 4 months ago - 139 downloads last month - 62 stars on GitHub - 1 maintainer
twinbooster 0.3.1
Python package for TwinBooster: Synergising Chemical Structures and Bioassay Descriptions for Enh...
14 versions - Latest release: 2 months ago - 62 downloads last month - 2 stars on GitHub - 1 maintainer
Top 3.9% on pypi.org
epam.indigo 1.19.0
Indigo universal cheminformatics toolkit
88 versions - Latest release: about 1 month ago - 5 dependent packages - 7 dependent repositories - 11.4 thousand downloads last month - 277 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
bingo-elastic 1.19.0
Cartridge that provides fast, scalable, and efficient storage and searching solution for chemical...
85 versions - Latest release: about 1 month ago - 2 dependent repositories - 518 downloads last month - 277 stars on GitHub - 1 maintainer
Top 6.6% on pypi.org
oddt 0.4.1
Open Drug Discovery Toolkit
25 versions - Latest release: almost 7 years ago - 6 dependent repositories - 480 downloads last month - 392 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
aizynthfinder 4.0.0
Retrosynthetic route finding using neural network guided Monte-Carlo tree search
4 versions - Latest release: 6 months ago - 1 dependent repositories - 670 downloads last month - 536 stars on GitHub - 2 maintainers
fermo_core
Data processing/analysis functionality of metabolomics dashboard FERMO
1 version - 1 stars on GitHub
papyrus-structure-pipeline 0.0.5
Papyrus Structure Pipeline
9 versions - Latest release: 9 months ago - 143 downloads last month - 4 stars on GitHub - 1 maintainer
spectrafp 1.2.4
A package to perform fingerprints from spectroscopy datas.
9 versions - Latest release: 3 months ago - 1 dependent repositories - 48 downloads last month - 7 stars on GitHub - 1 maintainer
debio 0.1.1
A community-curated, decentralized biomedical ontology.
5 versions - Latest release: over 1 year ago - 41 downloads last month - 0 stars on GitHub - 1 maintainer
moo-chem 0.0.1
Molecule Overlap Optimizer (MOO)
1 version - Latest release: 6 months ago - 17 downloads last month - 1 maintainer
uamc-qed 1.0.2
Python implementation of the QED descriptor (Quantitative Estimation of Druglikeness)
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
mold2-pywrapper 0.1.0
Python wrapper for Mold2 descriptors
16 versions - Latest release: 5 months ago - 1 dependent package - 133 downloads last month - 1 stars on GitHub - 1 maintainer
Top 3.3% on pypi.org
pytdc 0.4.14
Therapeutics Data Commons
47 versions - Latest release: 19 days ago - 5 dependent packages - 12 dependent repositories - 18.6 thousand downloads last month - 930 stars on GitHub - 3 maintainers
bokehmol 0.1.1
Tools for plotting molecules in Bokeh
5 versions - Latest release: 2 months ago - 655 downloads last month - 4 stars on GitHub - 1 maintainer
hotpot-zzy 0.2.6
A python package designed to communicate among various chemical and materials calculational tools
17 versions - Latest release: 12 months ago - 104 downloads last month - 11 stars on GitHub - 1 maintainer
chem-classification 0.0.3 💰
Deep learning in smiles win / loss evaluation.
3 versions - Latest release: over 1 year ago - 1 dependent package - 34 downloads last month - 1 stars on GitHub - 1 maintainer
chem-ant 0.0.9 💰
Select materials to output molecules similar to the target molecule with MCTS Solver and Genetic ...
10 versions - Latest release: 6 months ago - 89 downloads last month - 2 stars on GitHub - 1 maintainer
molstruct 3.0.0
Convert chemical molecule data CSV files to structured data formats
5 versions - Latest release: about 3 years ago - 1 dependent repositories - 46 downloads last month - 4 stars on GitHub - 1 maintainer
chemdraw 0.0.5
Drawing molecules
5 versions - Latest release: almost 2 years ago - 1 dependent repositories - 110 downloads last month - 31 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
libchebipy 1.0.10
libChEBIpy: a Python API for accessing the ChEBI database
11 versions - Latest release: over 4 years ago - 4 dependent packages - 4 dependent repositories - 213 downloads last month - 21 stars on GitHub - 1 maintainer
flashflood 0.13.0
HTTP API server builder for chemical database workflow
9 versions - Latest release: almost 6 years ago - 1 dependent repositories - 87 downloads last month - 2 stars on GitHub - 1 maintainer
chorus 0.9.0
Simple chemical structure modeling toolkit
6 versions - Latest release: almost 6 years ago - 2 dependent repositories - 80 downloads last month - 5 stars on GitHub - 1 maintainer
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules
15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 124 downloads last month - 1 maintainer
robert 1.0.5
Refiner and Optimizer of a Bunch of Existing Regression Tools
7 versions - Latest release: 6 months ago - 1 dependent repositories - 44 downloads last month - 21 stars on GitHub - 1 maintainer
jtnnencoder 0.1
An Easy to install version of the jtnn encoder for generation of latent molecule features.
1 version - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 4 stars on GitHub - 1 maintainer
bluedesc-pywrapper 0.0.5
Python wrapper for BlueDesc molecular descriptors
7 versions - Latest release: 23 days ago - 160 downloads last month - 0 stars on GitHub - 1 maintainer
mlchemad 1.5.2
Applicability domains for cheminformactics.
10 versions - Latest release: about 2 months ago - 2 dependent packages - 179 downloads last month - 1 stars on GitHub - 1 maintainer
pyisopach 0.1.2
This program calculates the isotopic distribution/pattern of a given chemical species.
3 versions - Latest release: almost 5 years ago - 53 downloads last month - 9 stars on GitHub - 1 maintainer
altmol 0.2.2
Plugin to show molecule images on mouseover using RDKit and Altair
2 versions - Latest release: 18 days ago - 262 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.7% on pypi.org
chemspipy 2.0.0
A simple Python wrapper around the ChemSpider Web Services.
7 versions - Latest release: over 5 years ago - 1 dependent package - 12 dependent repositories - 552 downloads last month - 106 stars on GitHub - 1 maintainer
Top 2.6% on pypi.org
chembl-webresource-client 0.10.9
Python client fot accessing ChEMBL webservices.
74 versions - Latest release: 3 months ago - 8 dependent packages - 22 dependent repositories - 12.5 thousand downloads last month - 347 stars on GitHub - 2 maintainers
gninatorch 0.0.2
PyTorch implementation of GNINA scoring function
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 36 downloads last month - 556 stars on GitHub - 1 maintainer
cdk-pywrapper 0.1.0
Python wrapper for CDK molecular descriptors and fingerprints
8 versions - Latest release: 5 months ago - 108 downloads last month - 1 stars on GitHub - 1 maintainer
fragment-elaboration-scripts 0.1.1
A collection of notebooks and scripts for the prediction of follow-up compounds in
2 versions - Latest release: 5 months ago - 10 downloads last month - 9 stars on GitHub - 1 maintainer
fpsim2 0.5.1
Simple package for fast molecular similarity searching
8 versions - Latest release: 4 months ago - 1 dependent repositories - 815 downloads last month - 102 stars on GitHub - 1 maintainer
molbokeh 1.0.1
Simple package to display molecules images in bokeh interactive charts.
2 versions - Latest release: 4 months ago - 23 downloads last month - 4 stars on GitHub - 1 maintainer
fragmenstein 1.0.5
Merging, linking and placing compounds by stitching them together like a reanimated corpse
84 versions - Latest release: 18 days ago - 1 dependent package - 1 dependent repositories - 441 downloads last month - 160 stars on GitHub - 1 maintainer
graphsite 0.1.0
Compute graph representations of protein binding sites
1 version - Latest release: almost 3 years ago - 1 dependent repositories - 7 downloads last month - 9 stars on GitHub - 1 maintainer
puzc 0.0.111111
This Python package, PubChemAPI, simplifies the interaction with the PubChem database, allowing u...
6 versions - Latest release: 6 months ago - 33 downloads last month - 1 maintainer
stko 0.0.40
A collection of molecular optimisers and property calculators for use with stk.
13 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 755 downloads last month - 19 stars on GitHub - 2 maintainers
signature-pywrapper 0.0.2
Python wrapper for signature molecular descriptors
3 versions - Latest release: 12 months ago - 43 downloads last month - 0 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
rdkit-pypi 2022.9.5
A collection of chemoinformatics and machine-learning software written in C++ and Python
37 versions - Latest release: over 1 year ago - 87 dependent packages - 338 dependent repositories - 157 thousand downloads last month - 112 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
rdkit 2023.9.6
A collection of chemoinformatics and machine-learning software written in C++ and Python
20 versions - Latest release: about 1 month ago - 315 dependent packages - 460 dependent repositories - 1.04 million downloads last month - 116 stars on GitHub - 2 maintainers
asciimol 1.2.3
An ASCII molecule viewer.
13 versions - Latest release: about 1 year ago - 187 downloads last month - 349 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
pubchempy 1.0.4
A simple Python wrapper around the PubChem PUG REST API.
5 versions - Latest release: about 7 years ago - 31 dependent packages - 73 dependent repositories - 43.3 thousand downloads last month - 356 stars on GitHub - 1 maintainer
equilibrator-cheminfo 0.15.0
Light adapter classes around Open Babel, RDKit, and ChemAxon for the functionality needed in eQul...
20 versions - Latest release: about 2 years ago - 1 dependent repositories - 201 downloads last month - 0 stars on GitLab.com - 2 maintainers
papyrus-scripts 1.0.3
A collection of scripts to handle the Papyrus bioactivity dataset
4 versions - Latest release: 9 months ago - 1 dependent package - 180 downloads last month - 16 stars on GitHub - 1 maintainer
padel-pywrapper 1.0.5
Python wrapper for the PaDEL descriptors
16 versions - Latest release: 23 days ago - 2 dependent packages - 1 dependent repositories - 226 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.3% on pypi.org
molvs 0.1.1
Molecule Validation and Standardization
11 versions - Latest release: about 6 years ago - 1 dependent package - 8 dependent repositories - 2.42 thousand downloads last month - 146 stars on GitHub - 1 maintainer
Top 5.0% on pypi.org
mols2grid 2.0.0
Interactive 2D small molecule viewer
19 versions - Latest release: 10 months ago - 3 dependent packages - 15 dependent repositories - 4.11 thousand downloads last month - 193 stars on GitHub - 1 maintainer